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LotjaGi1g1v0022900.2

Overview

Field Value
Gene ID LotjaGi1g1v0022900
Transcript ID LotjaGi1g1v0022900.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Serine/threonine-protein phosphatase; TAIR: AT5G55260.1 protein phosphatase X 2; Swiss-Prot: sp|P48528|PPX2_ARATH Serine/threonine-protein phosphatase PP-X isozyme 2; TrEMBL-Plants: tr|G7K499|G7K499_MEDTR Serine/threonine-protein phosphatase; Found in the gene: LotjaGi1g1v0022900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:2787939..2791223) extracted from Lotus japonicus Gifu genome v1.2.

GAGAGTGAAAGATGTCTGACCTAGATAGGCAAATTGAGCAGTTGAAGCGATGCGAGCCTCTGAAGGAGTCTGAAGTGAAG ACCCTTTGTCTCAAAGCCATGGAAATTCTCGTTGAAGAGAGCAATGTTCAAAGGGTCGACGCTCCTGTCACTGTTAGTCA CTTTTTCCCCTTTTTATTCATTCATGATTCAACCCATTTTGTTGTTTTTCTTCGATTTCTAGCTTCTGGGTTTTCATTTG ATTCTCGATTTACGAACTGGGTTGTTGTGATTTTTGCTCAAATCGAGTAAAGGAACTTGCTTTTTATAATTTGACATTTG AAGTGTAGTGTGATTGGTTATGAACCACTCTACTGGGAAATTCAGTTTATTTAGGGTTCAATGTAATGTAGTTGGTAGAT TTTGTGCCTTTTTCTGTTCTGTTTTTGTTGGAGCGGCGCAGCGGAACGTTAGACTTTTGTTGGAGTTTACCACACATAGG GTTAAGAGGCTAAGAGCATAAGTGGTGTAGGATATCAGTTTTGAGATTAGAGTGTCATGGGGACACATAGGAAGTGAGCT TCTTAGGCCTTTTTCGGATGCAGTGAAGTTAGGATTGTTTGCTTGCTGCATTTATGTTTCTTCTGCTTGTGATATTTTTA TTGTACTGGAACTGATTAGTATTGTTGGTTTTCTTGTTCTTTGTGTAGATTTGTGGGGATATTCATGGCCAGTTTTATGA TATGAAGGAGCTTTTCAAAGTGGGAGGTGATTGCCCCAAAACAAACTATTTATTCCTTGGGGATTTTGTTGATAGAGGGT TTTACTCAGTTGAAACGTTTCTGCTTCTGCTCGCTCTTAAGGTTAGTCTTTTCTCTTACATATTTTTGTTCTGTTAAAAT TGGAAGTCAGGAGTATGTTGTGTGGTTCTTTTAGAGAATCTTGTAATTGTTTAGGTGTTTATTGTATGATTTCAACATTG GTTAGTTCTTCTGCGTTAGGCAACCTTGTAATAATTAAAAAATGTTGGTCTTGTAGCTGTGATTGGTGAATGTAATGTGG TTGGCTGAACGTTATTCTTTTTTAAGGGAACTCAATTTGCTATTACTGGAATAAAATTCTAGAAGTCTTTGTGTGGCATG GCATGAGTGGTGAAGCTTGAAAATATGCCAAATGAGGCTTTATTGGTGGTCTTTTAGTAATCTGGTGTTGAGGTTTTGTC GGCAAAAAGGAGAACAAAATGCTTTGGATGCTTGATTTAGTACTCAGCTGTTTCTTCTATTCTCTTTGCAGACAGGATTT TAATTGCAGTTTTTCCCTCACTTTGTCTGTCTGTGGTCATGGCTTTTTTAAGGGTTTCCTTGGTCTATAATGCAAAGGGA CTGTTGTTTTTTCTTTTGAGCTATGTTCTTCTCTCTATGTTGTTGCCTTTTCTTTATTTATTAGGAAAACTGCCTGAGAG TCCTTCTGCTTTATTTATCTGTCGTTGAACTCTTCTTTTATGGCTTTTAAAAATGACAAAGAAAAGATAATGGGTTTCGT AACTAGGGGCTGAACCACTCCAACTCTTTCTGCCATTAGTGATGCTTCTTTCATTTGGTTTATTATTGTTGTAACTAATT AATGACATACAATCAGGTGAGGTATCCAGATCGGATAACACTCATTAGGGGAAACCATGAGAGCCGTCAGATCACACAGG TTTGTCTATCAGCCAAGTGGAAGAAAGAAATAACTTTTTTATTAATATGATAAATGACAGTGGGGAAAAAGATACTGAAA TGTTTCTCAACATTTTGTGATTTCAGCATACTTATTCAATATCCATCACTTGACAGGTATATGGATTCTATGATGAGTGC CTTCGAAAATATGGTTCGGTCAATGTTTGGAGATATTGCACTGACGTATTCGATTACTTAAGGTTTGCTAATATAGTAAT ATCTGATAGATCTCAATATTTTATACACACGTGTTTCATATATAGCAGATTGAGATATTAATATAGACATTACTTGGTTT TAGTATTGCACTTGGGAGCTACTTCTCCACATGACTTTAATGCCTGATTTGCTATTAAATTCCTGAAATTGTCGTTTTTC CACCAGACAGATTTCATTTTCCATTCTGTACTGTTGCTGACATCTCCCTCTTGTTGTGTCTGTTTGTGTATTTTAAGTGT AGAAGGGGTTGGGTTGATGATTCTGGAAACAATAGACTTACCTAATAAATACATAGAAGAGAAATGAATACACTCTTCAT CACACTTTATTTTTCAACAGGTCTATTATTAGGTGAACAACAATGATATGTTAGCGAATTCCCATTTGAGGCCCACAAAT AGAGAGTGGGCCCAGGTATTGACGAGGGGGAGCATGGGAGCTCACACAATAATCGAGAGGGTGTTAAAAAGAGGGTGTGA AATAATATGCTGGTAGCACTTCTTGTGTATAATAGCTAAAAATAAAAAAACCAGAGGATTTAATGGAAACATGTGTATCA AGTTGCTTATAACTTATTAAGTCTACTTAACTGCACTTACAAATTTACTTGTTTCAACTTGCATCTTCCACTAATGGGTT TCCTATGTTGACAATGGCAAAATGCAGCTTGTCCGCCCTAATTGAAAACAAGATTTTCAGTGTTCATGGTGGTCTTTCTC CTGCCATTTCAACATTGGATCAGGTTATAAATTCCACCTTAATTTATTTGTCTCTGGGGTTTTAGATTGTAAATTATTAG CGGACATTATATACATTATCTATTATTCATATCCAGATACGAACTATTGATCGGAAGCAAGAGGTACCTCATGATGGTGC TATGTGTGACCTCCTATGGTCAGATCCTGAAGATATTGTGGATGGATGGGGTCTGAGTCCCCGTGGTGCTGGTTTCTTAT TTGGTGGCAGCGTTGTTACCTCCTTTAACCACTCCAATAACATTGACTATATATGCCGTGCTCATCAGTTGGTAATGGAA GGTTATAAATGGATGTTCAATAACCAGATAGTTACTGTCTGGTCAGCTCCAAATTATTGTTACAGGTATAAAACCAATCA AAGTTCATCATTACTTGTGCTCTGATGTTTTTAATTATACATTTTTATCTTTGTTACAGATGTGGTAATGTAGCTGCTAT TCTGGAGTTGGATGGAAATCTTAATAAGCAGTTCCGTGTGTTTGATGCTGCCCCACAGGTTTGTCAGCAAAAGCACTTGA TTTTGATTACCTGGATTCTGGTTTCCTTTAATGGTAGCAATTTGAGCCTCACCCTTTATGTCAAATCCTTTGATTCATGT GGTGA 

CDS sequence (LotjaGi1g1v0022900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTGACCTAGATAGGCAAATTGAGCAGTTGAAGCGATGCGAGCCTCTGAAGGAGTCTGAAGTGAAGACCCTTTGTCT CAAAGCCATGGAAATTCTCGTTGAAGAGAGCAATGTTCAAAGGGTCGACGCTCCTGTCACTATTTGTGGGGATATTCATG GCCAGTTTTATGATATGAAGGAGCTTTTCAAAGTGGGAGGTGATTGCCCCAAAACAAACTATTTATTCCTTGGGGATTTT GTTGATAGAGGGTTTTACTCAGTTGAAACGTTTCTGCTTCTGCTCGCTCTTAAGGTGAGGTATCCAGATCGGATAACACT CATTAGGGGAAACCATGAGAGCCGTCAGATCACACAGGTATATGGATTCTATGATGAGTGCCTTCGAAAATATGGTTCGG TCAATGTTTGGAGATATTGCACTGACGTATTCGATTACTTAAGCTTGTCCGCCCTAATTGAAAACAAGATTTTCAGTGTT CATGGTGGTCTTTCTCCTGCCATTTCAACATTGGATCAGATACGAACTATTGATCGGAAGCAAGAGGTACCTCATGATGG TGCTATGTGTGACCTCCTATGGTCAGATCCTGAAGATATTGTGGATGGATGGGGTCTGAGTCCCCGTGGTGCTGGTTTCT TATTTGGTGGCAGCGTTGTTACCTCCTTTAACCACTCCAATAACATTGACTATATATGCCGTGCTCATCAGTTGGTAATG GAAGGTTATAAATGGATGTTCAATAACCAGATAGTTACTGTCTGGTCAGCTCCAAATTATTGTTACAGATGTGGTAATGT AGCTGCTATTCTGGAGTTGGATGGAAATCTTAATAAGCAGTTCCGTGTGTTTGATGCTGCCCCACAGCAATTTGAGCCTC ACCCTTTATGTCAAATCCTTTGA 

Protein sequence (LotjaGi1g1v0022900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSDLDRQIEQLKRCEPLKESEVKTLCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDF VDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDVFDYLSLSALIENKIFSV HGGLSPAISTLDQIRTIDRKQEVPHDGAMCDLLWSDPEDIVDGWGLSPRGAGFLFGGSVVTSFNHSNNIDYICRAHQLVM EGYKWMFNNQIVTVWSAPNYCYRCGNVAAILELDGNLNKQFRVFDAAPQQFEPHPLCQIL 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 292 292 2.1E-199
Gene3D 1 298 298 1.4E-132
PANTHER 1 292 292 2.1E-199
SUPERFAMILY 2 290 289 5.43E-119
CDD 3 288 286 0.0
SMART 17 288 272 9.9E-144
Pfam 45 237 193 1.6E-37
PRINTS 45 72 28 1.1E-88
PRINTS 74 101 28 1.1E-88
PRINTS 107 131 25 1.1E-88
ProSitePatterns 108 113 6 -
PRINTS 142 168 27 1.1E-88
PRINTS 171 198 28 1.1E-88
PRINTS 228 248 21 1.1E-88
PRINTS 250 266 17 1.1E-88

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0022900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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