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LotjaGi1g1v0027400.1

Overview

Field Value
Gene ID LotjaGi1g1v0027400
Transcript ID LotjaGi1g1v0027400.1
Lotus japonicus genome version Gifu v1.2
Description Bromodomain-containing protein, putative; TAIR: AT5G55040.1 DNA-binding bromodomain-containing protein; Swiss-Prot: sp|Q9ULD4|BRPF3_HUMAN Bromodomain and PHD finger-containing protein 3; TrEMBL-Plants: tr|A0A0L9UUY7|A0A0L9UUY7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0027400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:3321857..3327987) extracted from Lotus japonicus Gifu genome v1.2.

GTCTGAACACCGAGGCTTGAAAAAACAAGCGAAGGCAACCCACCCTCGAAAATAATGGAACCCCAAACCAAACCAAGAGA GAGAAAGTAAGACACAGGGTTTTAGAGAGAGAAAGTGAGTGAGCACCATCAACAGCGATAGATGATGGGTCAGATCGTGC GTAGGAAGAAGAAGGGTCGTCCTTCCAAGGCAGATCTAGCTCGCCGCTCCGCCAACGCCAACTCTCCGGCGACGACTGCA CAGTCCACTCTCCGTCGCAGCCGCCGCCCGAGAAATGTCAGGTACAACATCGATTACCTTGATGAAGAGGATGAGGATGA GGATGAGGATGAGGATGATGATGAGAGGGGGAGGGAGAAGAAGAAGCTCAAGCTGGTTGAGAAGCTGAACCAGGGGGTGG AGGAAGAGGAAGAAGATGAGGAGGATGAAGAGGAGCAAACGCCGCATCCCACTCGCGGAAGGTCGCGTGTGGAGCACGCG CAAGAGGAGGATGAAGAAGAAGAAAATGGGGAGGAAGAAGAAGAGGAAGAGGAGGTTGTTGTTGAAGATGAGCAAGGGAA TGAGGATGAAGATGAAGAAGAAGAAGGGGTTGTTGTTGTTGAGGTAAGTGCTAATTGCATTTTGGATTTGGAAGAGTGTG TGTGTGTGTTGTGTCATTGTGTGTGTGTGGTGAGACAACAAAGTGTCCAGCTCAGCTGAAATCACTGAGATTGATTTTCT TTGATACCAATTGGTCCATAGTTCAATTCTCTCTCTCTGTTTCTCTCTCTAGGCCTCTCTCTCTCTCTCTCTCTCTCACT CTGTCTATGTCGGGATTTTGGGAGAGACAACCTACGAAGTGTTGTCTGTCTACATCGCAGTCTTTCTTATATAGATGCAG TCTTTATGTCTTTTGAATGGTTTTTTTTTTGGGATTACATTATTAATTATGTGTGTGTTTGTGCCTTCTTGGGGTTGGTT TTCTTGTGACAGGTAAAGGGCAGAAAAGTGGATTCTAAAGGGCTCCACTCTGGTTCAGGTTTGTGTATGTGTATGTGTGT GTTTATGATTTGTTGTTTCGGTTGTAATTCTTCATAATAATGACTGCCCTCTTTGTTTTTCTTTTTTTAATGTAACGTGT TGGATACTGGAATGGGTGCACTGACCAGTGTTTCTGTTATTGCATCTTTCTCTGTGAGCTTCTTTCTCAAGTAGCTTTTT TGTTTTGTTTCTGCTGTTAGGAACTCCTTCGAAGGTTGCTTATGTGATTCCATTACCTGATAAGAGGACCCTGGAATTGA TCCTTGACAAACTTCAGAAGTAAGTGGTGAATGATTTTTGGACATGTTTGGATTAGCTTATTTCTTGTTTGAATTAGAAG CTACTCACATATGTTTCTCTCAGAATTGATTTTGACTTTAAAATCAATTATAGAAGAATTTCCAAACATGCACAACATCT TGAGTTATTGCATTGTTTTTTGGTGTTTTTTTCTTTCTTTTTCTTGACTTGGGGATGAATGATGGCAGGAAGGACACATA TGGCGTGTATGCGGAGCCAGTTGATCCAGAAGAGGTGTGTGGATTTTCATTCCTGTAAATTGTTACTTTCGCTTTTCAAA AGCAATATGAGTTGAAAGTTCAAGTTGTTTTACTGCAGCTCCCTGATTATCACGATGTGATTGATCATCCGATGGATTTT GCCACCGTGAGGAAGAAATTGGCAAATGGGTCTTATTCTACCTTGGAGCAATTTGAGGTGTGTTAACATGTATGATCTGT TCGTGGTTGGAGTTGGGGGAGGTTTCTTTTCTTTTCTGAGATTGATTGTTTTTGCAATATGATTGTGCTGGTTTTCTATG CACTTCTTTTCACTTGTTCTAAATGTTAGAAAGTTCACACATTGTCATGTACTTAATTAAGCATAACTTGCTTTCATTTT GGTTTAGTGAATTCAGTTCAGCAAGGACTGCTGTTACAAGTAACATGTGATGTGTGAGTTGTGAGCAAGAGGTTGGCACA TGCTGTTGGCAAGAGATGAAACATATAGGATGGCTAATTTGCCTGGAAAACAGAGTTTGTCGAGATTTTGGTCACTTGTG CTGACAATGGCATGCGACAGGCAGTAGTGATTGGCGTGTTTTTGAGAGATAGTCACGGGGGACATTTGTAGGAGTATGTT ACTAATGTGGAAGAATTTTTTCAGATGTCAATCTGTTTGTAACTTGCCTATTATGGCGTTGATGAATGATAGTCTTCCTA ACTTGGTATTGCAGTTTAACTCTTGGGGACATAGAGCCCTAAAATTTTATCCTCATGGTATGGTCTTTCTTAAACTAACT TATCAGCAACCCAAGCATTTGCATAAATAAAATTATGGCCAATGTCACCCAAAAACACCACCCTCATTTTTTTTATCTTC TTCGTGTATTGCCATGAAGTTTAGGTGTAAGGGATCAAGGCCCACTTTGTCTCTGGCTTCTTATTCTTTGTTAGTGTTAT TCAAGTTGTAACGTGTGAGCGGATGTGCTAGATTTAGTTTTTTCTTGACTAAGGTTTCCTGTATTACATAAGAATCCTGA GTTTTGTTTGCTCTATTATCTGAACCAATTTTAAACTGTGTATAGAGATTTTCTTTATGACAGTGATATACTGAAAAACA AATGATTTTACTGTTTTTATATTGACTTTTGAATGCAATTGTCGCATGCAGAGTGACGTATTTTTAATTTGCTCAAATGC AATGCAATACAATGCACCAGAAACTATATACCACAAACAGGTATAAAGATGACCGATTTCCCTTGTTTCCCTTTTAAAAC TATGGCAACTAACCATATTTTGTGCTTGACTGCTTGCTTTTATGATCCCTGCACTGATTACAGGCACGATCGATACAAGA ACTAGCAAGGAAAAAGTTTGAGAAGTTAAGGATTGACTTTGAACGCTCTCAGAGTGAGCTGAAATCTGAACAAAAAACAA GACCTAATTCCTTGGTGAAGAAGCTAGCAAAGAAACCGCTGGGTCATGCTTCACAGGAACCTGTTGGCTCTGATTTCTCC TCAGGTGCAACTCTTGCTACTATTGGAGATGTGCAGCCGATTTCCCATGCAATTCAAGGCATCATCTTTGAAAGACCTGG CAACATTGATGGCCTTGTGGAGGGGAATGCTTTCTCAATTGATGTTAATCAAGAGAAAGCAGACGACTTTTTATCAGGTA TCACAAAAGAGTTCAAGCTCTCCTCTGTCTATTCTGTAATTTCTGTTGCATTGTGCCTTCATTATTCAATTTTTGCGTTT TCTCATATTAGGATATTAATGTCAACATCTAGCTATTCTCTTTTGACTCTTCATTGTTTCAGGGAGGGGTACTCTCTCCA AGTTGGGAAGGAAGTCATCTGTACAAGACTTTGAACATCGTGCTACTTACAATATGTCCAATCTACCAGCCACCAGATCT GATTCAATATTTACGACATTTGAGGGTGAAATTAAGCAGCTAGTTACTGTATGTAGCCAAAGGAGTGAATTCTGATCCTT GAATAGTTTAGTTTTCTTATCTTGTTTAAAGCAAAAAATGTATTTTTTGGCTACAGGTCGGACTTCAAGCTGAATATTCC TATGCCAGGAGTTTGGCTCGTTTTGCTGCTACTCTAGGACCAACAGCTTGGAGAGTTGCTTCCCAAAGGATTCAGCAGGC ACTGCCATCTGGTTGTAAATTTGGTCGTGGTTGGGTGGGAGAATACGAACCGCTTCCAACCCCAGTATTAATGCTTCACA GACGTTTCCAGAAACAACCTAGTCTGGTAACAAAGTTCCAGTCTACTGATTTAGGGAAGGATGACAGAAATCGTAAGAAT GTGGAATCCATCACACAACATCCTGTTAACGAACGGATGTTTGATGGAAAACAGCCGTCAGTTCGTCCTGGAAGTGGGCT CACACCAGAAGGAAAACCATCTTTATTTGGTTCTGCTGGAATAAGACCCAATGCTTCTGTCAATCACCTTCATCAGCAAC CCAATGTCCAAACGCGGAACCAGGGCAAGCCTGAGAATAAGGGTTTGAAGCAAGTCGAGTTGAACTCTTTACCCTCTAGT GATCAAAACAATGCCAGTCTAGTTGCAAAGCTTACAAGTAGTACTCCTCCGGCGGTGTCTAAGCCCCGAGAGATTGTACC ATGTAGCTTGACACCGCCCAGAGAGATGGTACCAAGTAGCGTGAATATTTCACCGTCTGTACCTTTCAAGCAGCCTGATA CTAATGGAGTTGTTAGTGGAGAGTTGCCCAATGGAAAAGTCAGGAATATTAACATAAATAGACGGATGACCTGTCCATCA TCGGAAAGTACATCAAGCCAAACAGGCAGAGCTGCTCCCTTTGCTGCCCATGGGCAAGAGCAGACTCTCAGCGATCCGGT TCAGCTGATGAGGATGTTAGCTGAAAAGGCTCAAAAGCAACAGACTTCTAGTTCTTCTAATCATTCCCCTGCGGATACTC CACCAGTAACACCATCGGTTCCATCAAGTCGTCGAGAAGACTCAGGCAATGCTGCAGCGGCGGCTGCGCGTGCATGGATG TCTGTAGGGGCAGCAGGATTTAAACAAGGACCTGACAATTCTAGTTCTCCCAAGAACCAGAATTCTGCAGATTCATTGTA TAACCCGGCTCGAGAGTTCCATCAGCACATGTCACGAATTAGGGGCGAGTCAGAGTTCCATCAGCACATGTCACAAATGC CTTTCCAGCCTGAGAAGAACAATTTTCCATTTCAGGCACTTGGACCCCAACCTATCCACGGTCACACAGTTGGGGTTTCG CAGTTTCCGAACCGGCCTATGGTTTTCCCTCAAGTGGCAGCTTCTGATCTATCAAGATTTCAAATGCAGCCGCCTTGGCG AGGTGTCCGACCTCAAAATCAACCAAGACAGAAACAAGAATCACTTCCTCCTGACTTGAACATTGGTTTCCATTCACCTG GGTCACCTGCTAAACAATCGTCTGGTATGCTGGTTGACTCTCAGCAACCAGATCTGGCTTTGCAACTATGACATCGCACT CCAAATGTTTCCACAAGAATTTGACTGATGGAATTTCGACTCCTGTCATCGGATGTTGATTTTGATCCAAAAAGCCCTGC ATAAAGGAGGAAAAGTTGAGCATTTTGTTACTGCTGGGTAAGATTGTTATCCTTTGGATGCTTATGTTGGGGACGTTATG GCTTTTTAAGTAGGACTTGGCACAAGGTAAATTGGAATGACTAATCAGCTTGCTTATGATGAGAAGACTTGGGTGGATTT GGCAGATAATAACATCACAACTTTCCATCTTTTTCAGATTAGGATCACTGAGAAGCTGCAAGAGTGTGTTCTTTCCTGGA GTTGAAACCATTGAAAATGTCTATTGATTCCTGTTGATGCCTTGTACATTCGTTAGAAATGGATGAAATTCAGTTGCCTA GATATTGATTTGATTAGTGCATGTTTGGAAACTCTTCTACAATTGATTCTACGGTCAGAATCAATTCTGAGGAAAGCTTC TGTAAGTAGTGTCTGTGCTTTGGAATTGATTACGATGAATGAGAAGCTGATCCAAACGTGTTGTTAGATCATTACTTAAT CTCAATTGATGGAAAGGCACCACCACTTCCTAGCTCTTAATGATGCTCTTATTCTGTACATGAGATCTTTACATTTTTTT TAATTTTATTCTTAGTCATGCCCCTAAAGGGAAAAACTTTTGGCTTCACCATGCTTTCAAAATTTTCAAGTTATTGGAAG TTTGGAACATCTCTTTTTTGGGGCAATCAATTCCAAAAGTATTGGGATTTTGGGAAGTTGAAGCACCTGAGATTACATGA AATGATGAGACCGGACAACAAATATAAGTGGTTCCCACTTCCAAATTTGCAAGGCTTAAAGGAACATAATGTAAATGCTA TGTTTGGATATCCGTTGACACAAGTGAAAATAGACGTTAGTCTTAACTTTGAGGTAAAAAGTAAATAGAATTCTTCATAT TAATCGAGATAAAAATCTGTTCATTGAATTCAACTGATATTCAAACAGATACATAGTGGACATACGGTTGCAGCCTTTGT GCCCTTTGAAGCATGTATTGTTTATTTCAAAAACTCTTTTAGATAATTTCC 

CDS sequence (LotjaGi1g1v0027400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGGGTCAGATCGTGCGTAGGAAGAAGAAGGGTCGTCCTTCCAAGGCAGATCTAGCTCGCCGCTCCGCCAACGCCAA CTCTCCGGCGACGACTGCACAGTCCACTCTCCGTCGCAGCCGCCGCCCGAGAAATGTCAGGTACAACATCGATTACCTTG ATGAAGAGGATGAGGATGAGGATGAGGATGAGGATGATGATGAGAGGGGGAGGGAGAAGAAGAAGCTCAAGCTGGTTGAG AAGCTGAACCAGGGGGTGGAGGAAGAGGAAGAAGATGAGGAGGATGAAGAGGAGCAAACGCCGCATCCCACTCGCGGAAG GTCGCGTGTGGAGCACGCGCAAGAGGAGGATGAAGAAGAAGAAAATGGGGAGGAAGAAGAAGAGGAAGAGGAGGTTGTTG TTGAAGATGAGCAAGGGAATGAGGATGAAGATGAAGAAGAAGAAGGGGTTGTTGTTGTTGAGGTAAAGGGCAGAAAAGTG GATTCTAAAGGGCTCCACTCTGGTTCAGGAACTCCTTCGAAGGTTGCTTATGTGATTCCATTACCTGATAAGAGGACCCT GGAATTGATCCTTGACAAACTTCAGAAGAAGGACACATATGGCGTGTATGCGGAGCCAGTTGATCCAGAAGAGCTCCCTG ATTATCACGATGTGATTGATCATCCGATGGATTTTGCCACCGTGAGGAAGAAATTGGCAAATGGGTCTTATTCTACCTTG GAGCAATTTGAGAGTGACGTATTTTTAATTTGCTCAAATGCAATGCAATACAATGCACCAGAAACTATATACCACAAACA GGCACGATCGATACAAGAACTAGCAAGGAAAAAGTTTGAGAAGTTAAGGATTGACTTTGAACGCTCTCAGAGTGAGCTGA AATCTGAACAAAAAACAAGACCTAATTCCTTGGTGAAGAAGCTAGCAAAGAAACCGCTGGGTCATGCTTCACAGGAACCT GTTGGCTCTGATTTCTCCTCAGGTGCAACTCTTGCTACTATTGGAGATGTGCAGCCGATTTCCCATGCAATTCAAGGCAT CATCTTTGAAAGACCTGGCAACATTGATGGCCTTGTGGAGGGGAATGCTTTCTCAATTGATGTTAATCAAGAGAAAGCAG ACGACTTTTTATCAGGGAGGGGTACTCTCTCCAAGTTGGGAAGGAAGTCATCTGTACAAGACTTTGAACATCGTGCTACT TACAATATGTCCAATCTACCAGCCACCAGATCTGATTCAATATTTACGACATTTGAGGGTGAAATTAAGCAGCTAGTTAC TGTCGGACTTCAAGCTGAATATTCCTATGCCAGGAGTTTGGCTCGTTTTGCTGCTACTCTAGGACCAACAGCTTGGAGAG TTGCTTCCCAAAGGATTCAGCAGGCACTGCCATCTGGTTGTAAATTTGGTCGTGGTTGGGTGGGAGAATACGAACCGCTT CCAACCCCAGTATTAATGCTTCACAGACGTTTCCAGAAACAACCTAGTCTGGTAACAAAGTTCCAGTCTACTGATTTAGG GAAGGATGACAGAAATCGTAAGAATGTGGAATCCATCACACAACATCCTGTTAACGAACGGATGTTTGATGGAAAACAGC CGTCAGTTCGTCCTGGAAGTGGGCTCACACCAGAAGGAAAACCATCTTTATTTGGTTCTGCTGGAATAAGACCCAATGCT TCTGTCAATCACCTTCATCAGCAACCCAATGTCCAAACGCGGAACCAGGGCAAGCCTGAGAATAAGGGTTTGAAGCAAGT CGAGTTGAACTCTTTACCCTCTAGTGATCAAAACAATGCCAGTCTAGTTGCAAAGCTTACAAGTAGTACTCCTCCGGCGG TGTCTAAGCCCCGAGAGATTGTACCATGTAGCTTGACACCGCCCAGAGAGATGGTACCAAGTAGCGTGAATATTTCACCG TCTGTACCTTTCAAGCAGCCTGATACTAATGGAGTTGTTAGTGGAGAGTTGCCCAATGGAAAAGTCAGGAATATTAACAT AAATAGACGGATGACCTGTCCATCATCGGAAAGTACATCAAGCCAAACAGGCAGAGCTGCTCCCTTTGCTGCCCATGGGC AAGAGCAGACTCTCAGCGATCCGGTTCAGCTGATGAGGATGTTAGCTGAAAAGGCTCAAAAGCAACAGACTTCTAGTTCT TCTAATCATTCCCCTGCGGATACTCCACCAGTAACACCATCGGTTCCATCAAGTCGTCGAGAAGACTCAGGCAATGCTGC AGCGGCGGCTGCGCGTGCATGGATGTCTGTAGGGGCAGCAGGATTTAAACAAGGACCTGACAATTCTAGTTCTCCCAAGA ACCAGAATTCTGCAGATTCATTGTATAACCCGGCTCGAGAGTTCCATCAGCACATGTCACGAATTAGGGGCGAGTCAGAG TTCCATCAGCACATGTCACAAATGCCTTTCCAGCCTGAGAAGAACAATTTTCCATTTCAGGCACTTGGACCCCAACCTAT CCACGGTCACACAGTTGGGGTTTCGCAGTTTCCGAACCGGCCTATGGTTTTCCCTCAAGTGGCAGCTTCTGATCTATCAA GATTTCAAATGCAGCCGCCTTGGCGAGGTGTCCGACCTCAAAATCAACCAAGACAGAAACAAGAATCACTTCCTCCTGAC TTGAACATTGGTTTCCATTCACCTGGGTCACCTGCTAAACAATCGTCTGGTATGCTGGTTGACTCTCAGCAACCAGATCT GGCTTTGCAACTATGA 

Protein sequence (LotjaGi1g1v0027400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMGQIVRRKKKGRPSKADLARRSANANSPATTAQSTLRRSRRPRNVRYNIDYLDEEDEDEDEDEDDDERGREKKKLKLVE KLNQGVEEEEEDEEDEEEQTPHPTRGRSRVEHAQEEDEEEENGEEEEEEEEVVVEDEQGNEDEDEEEEGVVVVEVKGRKV DSKGLHSGSGTPSKVAYVIPLPDKRTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIDHPMDFATVRKKLANGSYSTL EQFESDVFLICSNAMQYNAPETIYHKQARSIQELARKKFEKLRIDFERSQSELKSEQKTRPNSLVKKLAKKPLGHASQEP VGSDFSSGATLATIGDVQPISHAIQGIIFERPGNIDGLVEGNAFSIDVNQEKADDFLSGRGTLSKLGRKSSVQDFEHRAT YNMSNLPATRSDSIFTTFEGEIKQLVTVGLQAEYSYARSLARFAATLGPTAWRVASQRIQQALPSGCKFGRGWVGEYEPL PTPVLMLHRRFQKQPSLVTKFQSTDLGKDDRNRKNVESITQHPVNERMFDGKQPSVRPGSGLTPEGKPSLFGSAGIRPNA SVNHLHQQPNVQTRNQGKPENKGLKQVELNSLPSSDQNNASLVAKLTSSTPPAVSKPREIVPCSLTPPREMVPSSVNISP SVPFKQPDTNGVVSGELPNGKVRNININRRMTCPSSESTSSQTGRAAPFAAHGQEQTLSDPVQLMRMLAEKAQKQQTSSS SNHSPADTPPVTPSVPSSRREDSGNAAAAAARAWMSVGAAGFKQGPDNSSSPKNQNSADSLYNPAREFHQHMSRIRGESE FHQHMSQMPFQPEKNNFPFQALGPQPIHGHTVGVSQFPNRPMVFPQVAASDLSRFQMQPPWRGVRPQNQPRQKQESLPPD LNIGFHSPGSPAKQSSGMLVDSQQPDLALQL 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 150 150 -
MobiDBLite 1 16 16 -
PANTHER 4 910 907 3.8E-190
PANTHER 4 910 907 3.8E-190
MobiDBLite 21 39 19 -
MobiDBLite 52 67 16 -
MobiDBLite 68 84 17 -
Coils 76 99 24 -
MobiDBLite 99 114 16 -
Coils 109 130 22 -
MobiDBLite 115 150 36 -
SUPERFAMILY 173 282 110 4.19E-34
SMART 176 284 109 9.4E-30
Gene3D 180 304 125 1.5E-37
CDD 183 279 97 2.42731E-32
Pfam 189 269 81 1.6E-23
ProSiteProfiles 195 265 71 18.778
ProSitePatterns 201 257 57 -
PRINTS 212 228 17 4.4E-13
PRINTS 228 246 19 4.4E-13
PRINTS 246 265 20 4.4E-13
MobiDBLite 502 557 56 -
MobiDBLite 607 628 22 -
MobiDBLite 640 695 56 -
MobiDBLite 665 687 23 -
MobiDBLite 710 741 32 -
MobiDBLite 710 780 71 -
MobiDBLite 763 780 18 -
MobiDBLite 859 911 53 -
MobiDBLite 862 876 15 -
MobiDBLite 888 911 24 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0027400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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