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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0037000 |
| Transcript ID | LotjaGi1g1v0037000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SBY9|I3SBY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0037000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:5182179..5184907) extracted from Lotus japonicus Gifu genome v1.2.
CTCCCTTTTATTGAATTTATTGGCTTATAAAAAAAACCCTTTCATAAGATAAGCCAAGTCTCCTAACAACTTTCGTCAAA TGTGGAGGTGGGGGTAACTGAACTAAAGAATCTGCAAAATATTTGGGGAGACCGAACTAAAGAATAAATAAAAAAATCTA TATTAAGATACATTCATTCCAAATCATGATGTATTTGTATGCATGATGTAACCATTCACCACCAACACAACAAATTAAGC TTTCACCTTGTGGCGCCTCAAACTCTCTAAGGTACTATTGCAATTCACAATCGCTCAATCATCTCATTAACTCTATAATT AGAGTTGTAATGTGATTTTTCTGGTGTTTGCTTGCTCCTCTCAGTCTCTACATTGATATGAATCACTTATATGTGTTGTA TTATTCTTATTTTCGCTTTTCCTAATTGCCTCTCAGTGTAGCCATGAAAGGAAGAAGGGGGTCAATTGGCTCTGCTAGGG CTACCAGGTCCAGAAGAAGCAACAAGAGTATACCTAAGAAAGTTGATGATTATGATGAGCCAGAACTTCAACAGCTAATT AGGAATTCTTTTGCTGATCTTCCATCCCCCATCACTGCTGACATTCTGCTAAGACTTCCCACTAAGTCTATTCTCATTTG TAAATGTGTTTGCAAAAGTTGGAAAGCTGTAATCTCAGACCCACATTTTGCCCAATCACACTTTCAGCAAGTCCCGGCTG ATTCCATGATGATCCGGGCCAAGACTCCGGATAATCAAGTGTCAAGAATCCTGCACCTTCTTGAGTTTGAGCCTGAAAAT TTTGAAAATGATGAGGATGATGGCCAATTCTGGTGCTGTAAGAGGGACTTGGTTATCAAAGCCGAATGCAACTCTAACTT GAAGCTTGAGAATACACTGAAGCTTCCTTTTCATTGGGCCAGAAGAGATAAGGACAAGAAAAAGGGTAGTCAAAAGCCTA GCAAGTCAGAAGATGAGATATTCATTAATAAGGTGATCAATTCTTCTAATGGCTTGCTTTGTTTGTCTGATCAGGGCAAA GAAAATTTTATTGCTTGCAACCCAGTTACAGGTGAGTTCATAAGACTTCCAAAAGCTACTAGAGTTGATAATACTGATGA GATGCCCTTGCACCAAAAAATATACGCTGGTTTTGGTTTCCAACCTAAAACTAATGAATATAAGGTGGTAAGAATATTCA AGAAGCGTTATATGATTGCTCAAATACACACACTAGGAACATCAACATGGAGGAATCTTGTAGTCAAATCTAGGTATTTG ACACGGCTTCAATTTCCTACTTGTGTGAGTGGTGCACTTCATTGGATCCGGGTCAGTGATTATGAAGACAAATTATCAAT ATTGTGTTTCAACTTTGAAACCGAGAGGTTTCGATCCTTCCCTTGTCCTCCTCATCTATTTAAAATGCATTGCACAACAT CTGTCACCATGGGAGAATTAAAAGGGTGTCTTTATGTATGTGCTTCATTTTCTTTATCTTATCATGATACTCGTGTCAAA ATGTGGATCATGAAGAAATATGGTTTTGGAGAATCATGGACTAAGGTTTTCAGCATTGATGTGACTGATCTTTGTAACAT TGGTGCTAAGATTAGATATCACACGTATTGTTTATGTTGGCCAGTAAAACACTTTAAGAATGGTGGTGGTATATTGATGT ATCATTCCTTCAATTGGTTTATCTACTATGAACCTGAAAAGAATGGATTCAAAATTTTCAAAGGTTATGGGACTAAATCA AGATTTAAGGTTATTCCTCATATTCCTAGTCTCATCTCATTGAAGGATGCTGTGAAAAGAGAGAACATCGATGTGCAGAA TTTTCACTCAAGGTAAGGATATTACTTTGTTCACTTGTTGATTCTAATGCTTCCTTAAAAATCATAACTACTTTGATATT ATAAATCATAAAACAAGTGTTTAGGGGAATACATATGGGTTTCTCATGTTGCAGCCACATTTATATTAACTTTCTTTTTT GGCATTCTGTTTTGGAGGTTGGGAAGAGAAATATATTGCTGCTATATGCAGAACCTTTTTATACATGTTATGATTTTAGT TTTTCTTCATTAGACACAATATAATCTACAAAGATTTGTGAATCTTTGCACTTTGCAGTTTATGAAACAAGAAAAAAAGT TATTTTTGGGTTCAAACTCTTTGCTAATTACATCTTTTGAACTTTTAGTATACCTTCCATATTGATGGAGGAGGAGAATA TGTAATGTTGATGTAATGTCCAACTCTTAGATATTCTTTTTTGGTAAAGTAGTACATATTATGTGAAAGATTAAAAGTAG ATGTTGGTGTCCATTCTGAGTTGCTGCTACCTCTAGTTTTAGCCACTTTACTACAACACTATTCACTAATATTGGTATCA TTTTATACAGTTGTGCAGGGTTAAAATTGCACGAAGAAATTAAAGTTCTTTTCTTGGCTAAAGTGAACGCTGAAGCGAGA AGTATGATCTGCACATCATCTGGTGAAGAAACTGTCATTCTGGAAACTTAATCTATATCTCAAGTTTGGGTTTGGCACTA GTTGTGATTTTTGGAAAAAAGTATATCTTGTCTTGGGTTAAAAAAATATGTTTTGTGTAAACTTAAACCTCATAAATTCG GAATAATTGTCTTTGGTTTCATGATTATTGCTCAGCATTCTTGTTCTGTTTTATGATCATCTCCTGCTTTTCTCTTTGCC ATATCTGCC
CDS sequence (LotjaGi1g1v0037000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGGAAGAAGGGGGTCAATTGGCTCTGCTAGGGCTACCAGGTCCAGAAGAAGCAACAAGAGTATACCTAAGAAAGT TGATGATTATGATGAGCCAGAACTTCAACAGCTAATTAGGAATTCTTTTGCTGATCTTCCATCCCCCATCACTGCTGACA TTCTGCTAAGACTTCCCACTAAGTCTATTCTCATTTGTAAATGTGTTTGCAAAAGTTGGAAAGCTGTAATCTCAGACCCA CATTTTGCCCAATCACACTTTCAGCAAGTCCCGGCTGATTCCATGATGATCCGGGCCAAGACTCCGGATAATCAAGTGTC AAGAATCCTGCACCTTCTTGAGTTTGAGCCTGAAAATTTTGAAAATGATGAGGATGATGGCCAATTCTGGTGCTGTAAGA GGGACTTGGTTATCAAAGCCGAATGCAACTCTAACTTGAAGCTTGAGAATACACTGAAGCTTCCTTTTCATTGGGCCAGA AGAGATAAGGACAAGAAAAAGGGTAGTCAAAAGCCTAGCAAGTCAGAAGATGAGATATTCATTAATAAGGTGATCAATTC TTCTAATGGCTTGCTTTGTTTGTCTGATCAGGGCAAAGAAAATTTTATTGCTTGCAACCCAGTTACAGGTGAGTTCATAA GACTTCCAAAAGCTACTAGAGTTGATAATACTGATGAGATGCCCTTGCACCAAAAAATATACGCTGGTTTTGGTTTCCAA CCTAAAACTAATGAATATAAGGTGGTAAGAATATTCAAGAAGCGTTATATGATTGCTCAAATACACACACTAGGAACATC AACATGGAGGAATCTTGTAGTCAAATCTAGGTATTTGACACGGCTTCAATTTCCTACTTGTGTGAGTGGTGCACTTCATT GGATCCGGGTCAGTGATTATGAAGACAAATTATCAATATTGTGTTTCAACTTTGAAACCGAGAGGTTTCGATCCTTCCCT TGTCCTCCTCATCTATTTAAAATGCATTGCACAACATCTGTCACCATGGGAGAATTAAAAGGGTGTCTTTATGTATGTGC TTCATTTTCTTTATCTTATCATGATACTCGTGTCAAAATGTGGATCATGAAGAAATATGGTTTTGGAGAATCATGGACTA AGGTTTTCAGCATTGATGTGACTGATCTTTGTAACATTGGTGCTAAGATTAGATATCACACGTATTGTTTATGTTGGCCA GTAAAACACTTTAAGAATGGTGGTGGTATATTGATGTATCATTCCTTCAATTGGTTTATCTACTATGAACCTGAAAAGAA TGGATTCAAAATTTTCAAAGGTTATGGGACTAAATCAAGATTTAAGGTTATTCCTCATATTCCTAGTCTCATCTCATTGA AGGATGCTGTGAAAAGAGAGAACATCGATGTGCAGAATTTTCACTCAAGTTGTGCAGGGTTAAAATTGCACGAAGAAATT AAAGTTCTTTTCTTGGCTAAAGTGAACGCTGAAGCGAGAAGTATGATCTGCACATCATCTGGTGAAGAAACTGTCATTCT GGAAACTTAA
Protein sequence (LotjaGi1g1v0037000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGRRGSIGSARATRSRRSNKSIPKKVDDYDEPELQQLIRNSFADLPSPITADILLRLPTKSILICKCVCKSWKAVISDP HFAQSHFQQVPADSMMIRAKTPDNQVSRILHLLEFEPENFENDEDDGQFWCCKRDLVIKAECNSNLKLENTLKLPFHWAR RDKDKKKGSQKPSKSEDEIFINKVINSSNGLLCLSDQGKENFIACNPVTGEFIRLPKATRVDNTDEMPLHQKIYAGFGFQ PKTNEYKVVRIFKKRYMIAQIHTLGTSTWRNLVVKSRYLTRLQFPTCVSGALHWIRVSDYEDKLSILCFNFETERFRSFP CPPHLFKMHCTTSVTMGELKGCLYVCASFSLSYHDTRVKMWIMKKYGFGESWTKVFSIDVTDLCNIGAKIRYHTYCLCWP VKHFKNGGGILMYHSFNWFIYYEPEKNGFKIFKGYGTKSRFKVIPHIPSLISLKDAVKRENIDVQNFHSSCAGLKLHEEI KVLFLAKVNAEARSMICTSSGEETVILET
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 27 | 27 | - | – | |
| Gene3D | 32 | 150 | 119 | 4.0E-9 | – | |
| SUPERFAMILY | 40 | 125 | 86 | 1.22E-15 | ||
| ProSiteProfiles | 40 | 90 | 51 | 10.584 | ||
| Pfam | 42 | 82 | 41 | 6.3E-9 | ||
| PANTHER | 45 | 388 | 344 | 2.9E-35 | – | |
| PANTHER | 45 | 388 | 344 | 2.9E-35 | – | |
| SMART | 46 | 86 | 41 | 1.2E-5 | ||
| TIGRFAM | 188 | 388 | 201 | 1.4E-28 | ||
| Pfam | 287 | 391 | 105 | 7.5E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0037000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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