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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0037100 |
| Transcript ID | LotjaGi1g1v0037100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SBY9|I3SBY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0037100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:5188687..5192709) extracted from Lotus japonicus Gifu genome v1.2.
AGATGAATGAATGAATGAATAGTGCCACAATTGCAATTTCATGGAACCGTTCACCATCAACACAACACGTTTGGTTTTCT GAGAAATCTTTGTGCTTGTGGCGTCAAACTCTCTCAAGGTACTGTTTCAATTCACAATCCCTTGTCTTATCTTCTCCATA GTTAACTTTTCAATGTTTAATTGAACCGTTCACCATCAACACAACACGTTTGTTTTTCAATTCATGAACCTAACCCTTTA AGTTCTCACAGGAATTTTTGTTAAAATTGAATGAAAGGAGGAAAAATAACCCTTTTTTGTGTTGCATGCTTGCTCCTTAG TCTCTATTTTGACATGAATCCCTTGAATGTGTTGTGTTATTCTTAAATTTGCTTTTCCTGATTGCATATCAGTGTGGCCA TGAAAAGAAGAAGGGGCAAAAGGGTAGCAGACAAAGTTGATGATGAGCCAGAAAGTCAACAACTTGGGGCTTCTTTTGCT GATCTTCCAACCCACATTACTACTGACATTCTACTAAGACTTCCTGTTAAGTCTATTCTCATTTGTAAATCTGTTTGCAC AAGTTGGAAAGCTCTAATCTCAGACCCGCATTTTGCAAAATCGCACTTTGAACATGGCCCAACGGGTTTCACGATTCGGA CAAGGCATTGGGATGGAGATTCAAGAATCCTACACCTTATAGAGTCTGAGCCTGAAATTTTTGAAAATGATGATTATGGC CAATTCTGTTACTGTAAGCAGGACTTTATCAAACCCGAATGCAACTGTCACCTGAAGCTTGAGCGCAAACTCAAGCTTCC TCTTCATGGTGCCAAACTAGTTTTGGACAAAAGAGATGTGAACGGGAAAAGGGGAAGACAAAGGAATCATATTTCTTGCA AGCCAGAAATTGATAGGTTTGATGTGGTGAATTCTTGTAATGGCTTGCTTTGCTTGTCTGATAGGGACAGTGACTATATC GTTGTCTGTAACCCCGTTACAGGTGAGTTCATTAGACTTCCAGAAGCTACTACTAGAATTGTTAAAACTCGTGATATGTG GCTCCATGAAATATACATGGGCTTTGGTTTCCAACCCAAAACTAATGAATATAAGGTGGTAAGAATATTGAAGAGATTCT GGGGGTGGCAGGAGAAGCGTAATGTGGTTGTTGAAATTCACACACTAGGAGCATCAAGATGGAGGAATGTTGGAGTTGAT CTTGATCCTAGGTATTTGACTTTTCCTAGGTTTCCTACTTGTGTGAGTGGGGCACTTCATTGGTTCATGAAATTGTCAAT ATTGTGTTTCAACTTTGAAAGCGAGAGGTTCCAGTCCTTCCCTTCTCCTCCTATTCTATTTAAAGAGCATAGTATGGGCA ATATCACCATGGGAGAATTAAAAGGCTCTCTTTACATATGTGATTCATCTTCGTCATCTCATGGGCATACTCGTATCAAA ATGTGGATTATGAAGAAATATGGTTTTGGAGAATCATGGACAAAGGTTCTCAACATTGATACTATAAGGACAGATCGTTG GCCTTATGGTCAGTATTTTCCAGTAAAATACTTTAAGAATGATGCTGCTATATTGATGTTTCATTCTTGTTATACTCTTC GGCATCGCTTCATCTACTATGAACCTGAAAAGAATAAATTCAAAAAATTTAAGGTTCTTGGGATTGGGACTCAATCAACA TTTGAGGTTATTCCTCATATTCACAATCTCATCTCATTGAAGGATGCTGTGAATAGTGACAATATCAAGGTGATGAATGT CCACGCAAGGTAAGGATCGTCATTCACTAATTGATTCTAATATTGCCTTACAGATTATAATTACTTTGATATTATAAATT ATAAAACAAGTATTAAGGGGAATATATGTGAGTTTCCTATGTTGCTGCCACATTTATTTTAACTTTCTTTCTGTGATATT CTATTTGGGGGGGTTGTGAAGAGAAATCTGTTGCTTGCTCAATCAATTGCTAATACAACTAAACATAGGTGGAACTTTTT ATACATGTTATGGTTTTAACTTTTTTTATTATCTGTAATATTTGTAAATATTGGACTCAAACAAGTTGCTAGTAAAAGCA GATACTGGAGAGCATTCTGACTTGCTGCTACCTCTATCTTTAGCCACTTTACTATAACACTATTCACAAATATTGGTATC ATTTTATATAGTTGTGCAGAGTTTAAATTGGTTGAATAAAATGAAGTTCTTTTCTTGGCTAATTGAATGTTGAAGTTGAA GTGGCATATTTGTACTCCATATCATCTGATGATGAAGAATAGGGTGAAGAGCATATCTCCTAACAAGTAATTGCCATATA GCAAGGTTATTCTATATCGCAAGTTTAAGTTTAACTAGTTGTAATTTTTGGAATATATATATAAAACAAGAACATATGTG AGTTTCCTATGTTGCTAATTTTGTTTTTACTTCCGTTTCTGGCTTTCTATTTGGGATGTGTTGGGAAGAGAAACATGTTG CTTCGTCAATCAACTGCTTACACATGTTATGATTTTAGTTTTTCTTTACTATCTACAATATTTGTAAATCTTGCCTCATG CATTCTATAAAACAAAAAGTTCGATACAAACTGTGGTTGCTAATTATATCTTTGTAACTTTATATACCTTTCATATTGAT GGAGGAGGATACATTTTCAGTTGTTGCGATGTACAGCTCTTAGATATTCTTTGTTTTGTTAAGTAGCAGATATATTATGT GAAAGAGTAAAAGCAGATGATGGTGACCATTCTAACTTGCCACTACCTCCAGTTTTAGCCACATTACTTTAGCTTTATTC GCTAATATTGGTTTTCTTTTATGTAGGTCTGCAGAGTTAAAATTGCGCGAAGAAAGTGAAGTCATTTTCTTGGCTAAAGT GAAGGAGAGATTGGTAAATTTGCATATATCATCTGACGATGAAGAGTAGAGTGAATAGCACATCTCCTTATCTTCTTCAA AGAACTTCCATCATCATCTTCATATGTTTCTCCAAAAAACCCAGAAACAAACCCAGAAAATCATCAACCTCGTCCTCAAC TCCACCCAAATCTCAGGAACCCCCTTCCCCGTCCTCTCATCCAACCCCAACCCAACATCCGCAAACTCACAACATAGTAG CAATGGAAGTGACACCAACATCAATTTTAGATCTCAAATTAACCATCAACCGAAAATCCAATCTTGTTCTTCTTCTTAAT TATTGAAAATCCCATTAAAGTTTCTGGTTAAAGAGTTCGAGGGTGGAGGAGAACCCACCGTCGAGTCCATGTTCTCCTCT CCTCCGCAAAACCCTAATTCGGACCTAGATCAATGAGCAGCGAGCACCACCAACACCCGTTCAAGCCAGAATCAGTCAGA TCGATGATCACCGACACCAGATCAAGCCTGAACCATTGTCTCTCTCGATCTCCCACATCAGATCTATGACCAGTCCAAGT CGCTGCATGAGGAAGAATCGATGAGCTTGACTTGGAATTGTCAATTGGGTTAGGTTTTTGTGAATAAGAACAGATCTATG ATAGTTTTCTGCATTTTAGAGCGAGAGTAAGAAATGGGCTTTGATTTTCAGAGAGAAATCGAGGTGAGGTTTCGAGATGA TGAACTGGAAGTTGAAGGAAAATGAGATCCCTTATTGGAGATGGCTGTTGTCGATTTGCAGGAGTGGAAAAGGGGTGAAC CGTGTCTCGTTTAGGTGTTAGTCTGCATAAGAATCTCTCACCAGTTTTACTCTTATTCCAACTCATAGTCATGTACAGTG TATCTGTGTATGTGTATTACATTTACTCAATGTTTAAAACATTTTGTCCCATTAATTAGATTTGATTAAAAATACTCTCT GCTTGCGAATCCAGTACTGAATTTACATGTTCAACTATATATTTTTTATGATGATGACTGAGTTTGGGGAGATTGTTTTA ACAATAATCCATAACAAAAAATGGGGTGGAGTGTAATATTTGTTTTAATAATTGTTATCTAAGTGAGAAAAATGGGGTGG AATGTAATATTTGGGCAAATTTG
CDS sequence (LotjaGi1g1v0037100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAGTGCCACAATTGCAATTTCATGGAACCGTTCACCATCAACACAACACGTTTGGTTTTCTGAGAAATCTTTGTG CTTGTGGCGTCAAACTCTCTCAAGTGTGGCCATGAAAAGAAGAAGGGGCAAAAGGGTAGCAGACAAAGTTGATGATGAGC CAGAAAGTCAACAACTTGGGGCTTCTTTTGCTGATCTTCCAACCCACATTACTACTGACATTCTACTAAGACTTCCTGTT AAGTCTATTCTCATTTGTAAATCTGTTTGCACAAGTTGGAAAGCTCTAATCTCAGACCCGCATTTTGCAAAATCGCACTT TGAACATGGCCCAACGGGTTTCACGATTCGGACAAGGCATTGGGATGGAGATTCAAGAATCCTACACCTTATAGAGTCTG AGCCTGAAATTTTTGAAAATGATGATTATGGCCAATTCTGTTACTGTAAGCAGGACTTTATCAAACCCGAATGCAACTGT CACCTGAAGCTTGAGCGCAAACTCAAGCTTCCTCTTCATGGTGCCAAACTAGTTTTGGACAAAAGAGATGTGAACGGGAA AAGGGGAAGACAAAGGAATCATATTTCTTGCAAGCCAGAAATTGATAGGTTTGATGTGGTGAATTCTTGTAATGGCTTGC TTTGCTTGTCTGATAGGGACAGTGACTATATCGTTGTCTGTAACCCCGTTACAGGTGAGTTCATTAGACTTCCAGAAGCT ACTACTAGAATTGTTAAAACTCGTGATATGTGGCTCCATGAAATATACATGGGCTTTGGTTTCCAACCCAAAACTAATGA ATATAAGGTGGTAAGAATATTGAAGAGATTCTGGGGGTGGCAGGAGAAGCGTAATGTGGTTGTTGAAATTCACACACTAG GAGCATCAAGATGGAGGAATGTTGGAGTTGATCTTGATCCTAGGTATTTGACTTTTCCTAGGTTTCCTACTTGTGTGAGT GGGGCACTTCATTGGTTCATGAAATTGTCAATATTGTGTTTCAACTTTGAAAGCGAGAGGTTCCAGTCCTTCCCTTCTCC TCCTATTCTATTTAAAGAGCATAGTATGGGCAATATCACCATGGGAGAATTAAAAGGCTCTCTTTACATATGTGATTCAT CTTCGTCATCTCATGGGCATACTCGTATCAAAATGTGGATTATGAAGAAATATGGTTTTGGAGAATCATGGACAAAGGTT CTCAACATTGATACTATAAGGACAGATCGTTGGCCTTATGGTCAGTATTTTCCAGTAAAATACTTTAAGAATGATGCTGC TATATTGATGTTTCATTCTTGTTATACTCTTCGGCATCGCTTCATCTACTATGAACCTGAAAAGAATAAATTCAAAAAAT TTAAGGTTCTTGGGATTGGGACTCAATCAACATTTGAGGTTATTCCTCATATTCACAATCTCATCTCATTGAAGGATGCT GTGAATAGTGACAATATCAAGGTGATGAATGTCCACGCAAGGTCTGCAGAGTTAAAATTGCGCGAAGAAAGTGAAGTCAT TTTCTTGGCTAAAGTGAAGGAGAGATTGGTAAATTTGCATATATCATCTGACGATGAAGAGTAG
Protein sequence (LotjaGi1g1v0037100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSATIAISWNRSPSTQHVWFSEKSLCLWRQTLSSVAMKRRRGKRVADKVDDEPESQQLGASFADLPTHITTDILLRLPV KSILICKSVCTSWKALISDPHFAKSHFEHGPTGFTIRTRHWDGDSRILHLIESEPEIFENDDYGQFCYCKQDFIKPECNC HLKLERKLKLPLHGAKLVLDKRDVNGKRGRQRNHISCKPEIDRFDVVNSCNGLLCLSDRDSDYIVVCNPVTGEFIRLPEA TTRIVKTRDMWLHEIYMGFGFQPKTNEYKVVRILKRFWGWQEKRNVVVEIHTLGASRWRNVGVDLDPRYLTFPRFPTCVS GALHWFMKLSILCFNFESERFQSFPSPPILFKEHSMGNITMGELKGSLYICDSSSSSHGHTRIKMWIMKKYGFGESWTKV LNIDTIRTDRWPYGQYFPVKYFKNDAAILMFHSCYTLRHRFIYYEPEKNKFKKFKVLGIGTQSTFEVIPHIHNLISLKDA VNSDNIKVMNVHARSAELKLREESEVIFLAKVKERLVNLHISSDDEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 49 | 152 | 104 | 5.9E-9 | – | |
| ProSiteProfiles | 60 | 106 | 47 | 9.524 | ||
| Pfam | 62 | 102 | 41 | 6.5E-8 | ||
| SUPERFAMILY | 63 | 118 | 56 | 1.57E-13 | ||
| PANTHER | 65 | 411 | 347 | 2.0E-39 | – | |
| PANTHER | 65 | 411 | 347 | 2.0E-39 | – | |
| SMART | 66 | 105 | 40 | 3.2E-7 | ||
| TIGRFAM | 208 | 449 | 242 | 7.3E-29 | ||
| Pfam | 321 | 460 | 140 | 9.1E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0037100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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