Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0037800 |
Transcript ID | LotjaGi1g1v0037800.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | DNA/RNA-binding protein KIN17; TAIR: AT1G55460.1 DNA/RNA-binding protein Kin17, conserved region; Swiss-Prot: sp|Q9ZVU5|KIN17_ARATH KIN17-like protein; TrEMBL-Plants: tr|A0A151U225|A0A151U225_CAJCA DNA/RNA-binding protein KIN17; Found in the gene: LotjaGi1g1v0037800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:5273762..5277563) extracted from Lotus japonicus Gifu genome v1.2.
AGATGACACATCACAGGTCCCACATCGCATCGAGCATTGCTTCGTCATCGCCACCTTACTCTTCTCACGCGCCGCCACCA ACCACGGTGGAGCTCGCCGTGTGCTCTTTAAAGCTTCCTCCCGTCAACCCTTGTTCAGTCAAGATCGATAACAAGGGATT TCTCTGCATCTTCTGAAATTGGAATTCAAACAGTGGTAATGTTGTTCTCACAACCTCTATTTTAATTTTTGTTTATTTTA ATTTAACCGATCAATTTATGCTGTTGAATTGAGTGTTCCAAATTTCAATTTAGCTATCAAGTTGTGTTCTTATTGTGATC CAACCTTAGTAAGAACTTGTGTCTGTGTCTGAACTTGTGTCTGTGTTTGTGTTTGGTTTTCTACATTAGTTGTTGAATTA AATTGAGTTCTGAATTTTATTTGATTTTTGTATGGCTCAGAATAAGATTCAAGTTATGTCCAAGTACAACTCTTGTTAAT TTATTTATGTATTTTGATATGTTAGAGTGTAATGCCTTGGTTCATGTAATTGTGGTTTAAAATTTAAAATAATATGCTGC AAAAAAAAATTGTATAGCCTGTATTACATGACCTCTTTTAATTATAAAATGAAATGAGTTTTCCACTTCTGCTTCACTTG AGAAATGTTGAATGCGATTGAAGAGACTGTAGGATGTTGCATTCTCATGTATGGTGCTCAACCACCGGAATATTTTCAAA TGTGATTGAGGGACACTTGGTGGGCGAAAATTGTGTGAGTGAAGGTCAGAGGACCAGTTAGTCGACCTTGTGGATTTTCC AAGTGTCAATCTTCCCATACGCATTTTCTTTGTAGTCATTTTCTTGTTCCTTCTTCCTTGCTGTCAGGATTCAAAATAAT AATTTGCAAGTGCAATTTATCCTACTACAACCTTAGGTTTTAACATGGAAGCAGTTCTTGAACTTTTGTTAACTACAAAT TGCTGTGTTTTGCTATCAAGTGGTGTAGCCTGTTGTCCAGAATATACAGAAACTCAAGACAATTTCATTTGGAGACTGTA CATACAAATTGATACATAAGCTGCTAGTTCGAACGTTCAACTTCCTTCAAAAGTGTGTTGCTTGGCATGTTTGATCATTG TGCTTAGACGTCCTACGGCCACTTAGTATTAAGATATATGCAAGGAATTTGGCCCTCATCTTGTAATTATAAATTATGTA GCTAAAGATAATCCTGACAAACCAAGAGAAGGTTACAAGCTGTTAAGCAAGAGAAGCTCAGTTTTTAAGTTTAAATGAAT ATTTGAGATATTATCTTCAACTTTGGCACCTTTATGAAGTTCTGCTCTGGCTTTAATTTATTCATTCATTGCATCCTCCA TGCTGGTTATTAAAAATTGAAATCACTTACATGTTTATCAACATCAAACATAAAGAGTGAAGCAGATAGTTCCTAGTGCA CAAGAAAATGCGTTCATTGACTATCATTATCATACTTACATGGTTTTTGCTGACTATAGTTTTATTTCTGATGCTCGCTC CAAAATTCTACTGTTTCTTATTCTACTGTTTTAAGAATTTTAGCTTTTGTTCCAAACTTCCAATGCTGTTTTTATTACGA ATTTTTGTTGTTGTTGTTGTTGTGTGTTTTAATTTTTATTTTTTCTAACATAATGTCAGCTCTTTAGGAGGAAAGAAGCA CCGGCGAGGTTACATTTTGGTTGATCTGAAACATTTCATCCAGATTCTCAATGGGGAAAAATGAGTTTCTCACACCTAAG GCAATTGCCAATCGAATCAAAGCAAAAGGACTGCAGAAGCTTCGATGGTATTGCCAGATGTGCCAGAAGCAATGCCGAGA TGAGAATGGTTTTAAATGCCACTGCATGAGCGAAGGACACCAGCGCCAAATGCAAGTTTTTGGACAAAACCCGACTCGGA TAATTGAGGGCTATTCTGAAGAGTTTGAGAAATCTTTCCTTGAGCACATGAAGCGTAGCCACCGATTCAGCCGCATTGCT GCCACCGTAGTTTATAATGAATACATAAATGATAGACATCATGTTCATATGAACTCCACTGAGTGGGCTACGCTTACTGA GTTTGTTAAGTACTTGGGTCGAACTGGCAAGTGTAAGGTTGATGAAACACCCAAGGGATGGTTCATTACATACATAGATA GAGATTCAGAAACCCTTTTCAAGGAGAGGATGAAGAATAAGAGAATCAAGGCAGATATGGCAGATGAAGAAAAGCAAGAG AAGGAGATCATGAAACAGATTGAAAAGGCTGCGCAATTGATGCAACCACCTAATTCTGACCCTGATCAACCTTCACTAGT TGAGCCTCCGAGGGAACTAAATGTAGAAGATGGAGTTAAGATAGGATTTTCTCTTGGGTCCTTGGCTAGACCTGGGACCA AGGAAAAACCCGAGGCATCGAGGGTGGCGTTTGATGAGGTTGGCGAAGAGAAATATGAGGAAATAAATAATGGAAACAAT TTGAAGAGGAAAGGAAGTGGTGGTGGAAAATCAACTTTGGATGAATTGATGAGGGATGAAGAGAAGAAAAAAGAAAAAAT GAACAGGAAGGATTATTGGTTGCATGAGGGAACTGTTGTTAAGGTTATGAGCAAGGCCTTGGCTGAGAAGGGGTACTACA AGCAAAAGGGCGTTGTGCGAAAGGTGATTGACAAGTATGTTGGGGAAATAGAAATGCTTGAAAGCAAGCATGTGCTCAGA GTTGATCAGGCAGAACTTGAAACTGTGATTCCACAAGTCGGGGGCCGTGTAAAAATAGTCAATGGGGCATATCGTGGATC ACTTGCTAGGCTGCTGGGGGTGGATACAGAACATTTTTGCGCTAAGGTGCAGATAGAGAAAGGTCCCTATGAAGGTAGGG TACTTAAAGCTGTGGAATACGAGGACATTTGCAAAGTAGCCCAGTGAGTTTGATGGAATAATAAGTCAGTAATTCTGCTA AGTTGCATGAATTGGAGACTTTGTTCTTATGTACTTTCTTTCAATAGTGTGTCTTCTTATATTATAAAGCATGACTATTA TCTCTTCTACTAGACATAAATCTTTTTTGATTGTTTAGAATTCTGACTATATCTTGGCAACAAAAATGCAGAAAAGGATG GTGACTGAGCACTAAAGCATCATGTTAGAGGTGCAATTATTCTTCAATTTTATTTTAAAATTTACTGGGGAACGAAGTTC TTTTTCGCGTGCTTCATTTTCTTTTGCTTGATGGTTGGATTAGAATTTCTTTTTTTAATATCCAGTGCTGTTCTTTATGC CAAAAAAGTTGCACTTTTTTCTCTTTTTCTTGAAACGAAAATATTGGCTTTGAATTTCTTTCTGCTTTTCTATTCTTTTT GTAGCCATTGATATTCACATAATCTGATTTATTGCAATCACAAAAATAAAAACTAATAAATTATCATAGAAAGGAGAGAC AAAATACCCTTTTGTTTTATCATTCTGGCTGAATATGAATTCAATACTTCAAGCCAACCTATTGTTTCCTGAGTTTCTAC TTCTTTGCTGCTTCCTCTGTTCCCCCCTCTTCTCATTTTGTGTTATTCAACCAGTTGGTCGTCATTAAACATTTTTCTCA AGTTAAGGTCTTGAGAATTCATGAAACTGAAAGAATAATTCAATATAATAAGAAAAAATCTTACCTTTTCTCTGATTCTC TTCCTTATTATTTATTTTTAAATTTTTATAATAAGGTATGTAACTATAGTTTTTTTTTTGAAACTAACTATAGTTAATAT ATAATTTTTTTAATAAATAAATGAAAAGGTTAAAAATGCACC
CDS sequence (LotjaGi1g1v0037800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAAAATGAGTTTCTCACACCTAAGGCAATTGCCAATCGAATCAAAGCAAAAGGACTGCAGAAGCTTCGATGGTA TTGCCAGATGTGCCAGAAGCAATGCCGAGATGAGAATGGTTTTAAATGCCACTGCATGAGCGAAGGACACCAGCGCCAAA TGCAAGTTTTTGGACAAAACCCGACTCGGATAATTGAGGGCTATTCTGAAGAGTTTGAGAAATCTTTCCTTGAGCACATG AAGCGTAGCCACCGATTCAGCCGCATTGCTGCCACCGTAGTTTATAATGAATACATAAATGATAGACATCATGTTCATAT GAACTCCACTGAGTGGGCTACGCTTACTGAGTTTGTTAAGTACTTGGGTCGAACTGGCAAGTGTAAGGTTGATGAAACAC CCAAGGGATGGTTCATTACATACATAGATAGAGATTCAGAAACCCTTTTCAAGGAGAGGATGAAGAATAAGAGAATCAAG GCAGATATGGCAGATGAAGAAAAGCAAGAGAAGGAGATCATGAAACAGATTGAAAAGGCTGCGCAATTGATGCAACCACC TAATTCTGACCCTGATCAACCTTCACTAGTTGAGCCTCCGAGGGAACTAAATGTAGAAGATGGAGTTAAGATAGGATTTT CTCTTGGGTCCTTGGCTAGACCTGGGACCAAGGAAAAACCCGAGGCATCGAGGGTGGCGTTTGATGAGGTTGGCGAAGAG AAATATGAGGAAATAAATAATGGAAACAATTTGAAGAGGAAAGGAAGTGGTGGTGGAAAATCAACTTTGGATGAATTGAT GAGGGATGAAGAGAAGAAAAAAGAAAAAATGAACAGGAAGGATTATTGGTTGCATGAGGGAACTGTTGTTAAGGTTATGA GCAAGGCCTTGGCTGAGAAGGGGTACTACAAGCAAAAGGGCGTTGTGCGAAAGGTGATTGACAAGTATGTTGGGGAAATA GAAATGCTTGAAAGCAAGCATGTGCTCAGAGTTGATCAGGCAGAACTTGAAACTGTGATTCCACAAGTCGGGGGCCGTGT AAAAATAGTCAATGGGGCATATCGTGGATCACTTGCTAGGCTGCTGGGGGTGGATACAGAACATTTTTGCGCTAAGGTGC AGATAGAGAAAGGTCCCTATGAAGGTAGGGTACTTAAAGCTGTGGAATACGAGGACATTTGCAAAGTAGCCCAGTGA
Protein sequence (LotjaGi1g1v0037800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQVFGQNPTRIIEGYSEEFEKSFLEHM KRSHRFSRIAATVVYNEYINDRHHVHMNSTEWATLTEFVKYLGRTGKCKVDETPKGWFITYIDRDSETLFKERMKNKRIK ADMADEEKQEKEIMKQIEKAAQLMQPPNSDPDQPSLVEPPRELNVEDGVKIGFSLGSLARPGTKEKPEASRVAFDEVGEE KYEEINNGNNLKRKGSGGGKSTLDELMRDEEKKKEKMNRKDYWLHEGTVVKVMSKALAEKGYYKQKGVVRKVIDKYVGEI EMLESKHVLRVDQAELETVIPQVGGRVKIVNGAYRGSLARLLGVDTEHFCAKVQIEKGPYEGRVLKAVEYEDICKVAQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 396 | 396 | 1.2E-178 | ||
SUPERFAMILY | 26 | 66 | 41 | 4.46E-6 | ||
SMART | 52 | 178 | 127 | 2.4E-81 | ||
Pfam | 52 | 177 | 126 | 4.0E-48 | ||
Gene3D | 60 | 160 | 101 | 1.7E-43 | ||
Coils | 156 | 183 | 28 | - | – | |
Coils | 260 | 280 | 21 | - | – | |
Pfam | 279 | 332 | 54 | 9.8E-23 | ||
Gene3D | 288 | 340 | 53 | 4.0E-23 | – | |
Gene3D | 341 | 397 | 57 | 4.4E-25 | ||
CDD | 343 | 396 | 54 | 4.68805E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0037800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…