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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0042200 |
| Transcript ID | LotjaGi1g1v0042200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nascent polypeptide associated complex alpha subunit, putative; TAIR: AT3G49470.1 nascent polypeptide-associated complex subunit alpha-like protein 2; Swiss-Prot: sp|Q94JX9|NACA2_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 2; TrEMBL-Plants: tr|I3S057|I3S057_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0042200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:5810229..5813181) extracted from Lotus japonicus Gifu genome v1.2.
CCCAACAATTGAATGTGAAAAACAAACACTTAGGGCCTGTTTGATAGCAGTTTTAGTTCCCAGCCCAGAAGAACCTCACT CACACAACAACTCACAAGCCATGTCTCCAGGTACCGTTCTCGACGCTTCCTCCGACGACCACCAACAACTTCCCTCCGCC ACCGACGACAAGAAGAAACCTCAACCGCAGGCAGGTTCTTCCTTATTAACATTCGATTGTGTTTTGTTTTTTGTGATTAG TTTCATTTCTGTTGTTCTCATTTGAGTGATTGATATCAGGAGTACGATGATGCTCCTGTTGTTGAGGACGTGCACGATGA AGCCGATGAAGATGAAGATGACGACGAGGACGATGAGGATGATGAAGATGGTGCTCAAGGTCCTCTTCCTTTCACTATTT GATGTTTGTTGGTTCTGGTTGTTGTCATTATCAGCATTTGGTTAATGGGTTTCCTTTTGTTTTTTGATTTTTCCTTGTTG TCAATGAGATCTAACTTACTGGAGCAACCAACTATGATATTCCTAATCATAGTTCTTCAAATACACAAATGTTTATTGTT GGCTCACAGGTTAATAATGTTCAAACTTCAAAGTGAATGTTTGCTTCATCTTTTGGTTGAAATTTTTGTGCATTTATTTT TGCATTGACTGTTAGTTACCATTTGTGGGTTAATTAAGGATTACATTCATGTTGGTCTTAAGGCAAGGCACTCTTTGTGG CTTAGTTAAGAATGGCTGTCTCATGGGCTGCACTGATTTCGATTGATTGGCATTTGTGTCCTTTGGTTGTCTTCGCTTGA TTGGCATTTGTGTCCTTTGGCTGTCTTTACTCAATTGTTGGTTGATTGGCATTAATGCCCTTAGGCTTAACTAGAAGATA TGAGCTAAATTCAGTTCTTGCTGATTATGTTCAAACTTATCAGGTTGGTAGCATAATCACTCAAAGGTTTTCCAAGAAGT TAACAAAGATGACCTAGGCAAGTGGAACATATTATTTTTGTTGCACTGCGTGCGATGGGATATCCTGCAAAACCAAAGAA TGATCTTAACTTCAGCAAAAGAAGGAATCAGTAAATCAGTTAAATATTGAGCATCTTGCATTAATTTTCCATACAAATAA ATTTCCCAAGCAAAGCATAACATTCATGGTAAAAATAAAAACAAGTGTTCAATCTCTAAAATTCCGCTGGTTTCTGCTGA GTCCCATTGATTTTACTGTTTTTACCCTGTCAGCTTCACGGTTAATGAGTCATATGGTTGGGTTTTCTGTTTTGCTTGGT TTCTAAAGGCAAATGCCTTGCCTAAACCAGAAAGGTGTATGTAAGACAAGGGCCTCGCCAAATTAGCAGTGCCTCAGTTA GCTAGAGGGATGACCTCTTCTGGAGTCCTTGCACTACTTTGACTGAGCTCACTCTTATACTACCATTATTATGTTTGGGG TTCTTTTATTTTCATATCTTCCTATATTCAGCTACTGGTTTTCTGAGCACATGAATTTTATATTGTGGAGTTTGGATGAT GTAAAAACATTGTGCACTACAGTTGTTGAGTAAGAGCCCATTTGTATGCTGACCAAATAGCACTTATTGAAGCTTATCTA GTGCTTTTCTTAGTGCAGAAGCTCCTGGAAGTGCTCTTTGATCCGTATCCAAATGGAAACTAACTGTTACAATTCTGTTC ATTACTTTCCCTCTGCTGCAGCACTGCAGCTATATCCATTCTGTATTACATTTATTTGGCATGTAATCTGTTGATCTTGT TCATAAATGTGCTCTTTTGGACTTGGAGATGCAGGTACCACTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAAAAAAGCCG AAAAGCAATGTTGAAGCTTGGGCTGAAGCCTGTCACTGGCGTTAGTAGGGTCACAATCAAGAGAACAAAAAATGTTAGTG GCGTTATATTGTATTGTTGTTTATGTAAGAAATACTATCAATGCTCACTTTAACACTCTTTCCAACACTCGTTTATGTGT TGAAAACAATGTGGAATCTACTAATTATATGGGTTCACTCCCAGTTTGGTGGGACTCACATAGATTTCAACCAATAAAAG AGATGATGTTGGAAAGGGAGTGTTAGAGTGAGTATTGGACTATTGGTAGTACTCCTTGTGTGTATGTTTTATGTGGAAGA TGGCTGGCGTCTAACCAAATTATTTTCTGCTGCAGATACTTTTTTTCATCTCAAAACCTGATGTCTTTAAGAGTCCGAAT TCTGAGACATATGTCATATTCGGGGAGGCGAAAATAGAGGACCTGAGCTCGCAGTTGCAGACGCAAGCTGCTCAGCAGTT CAGAATGCCAGATATGGCATCTGTAATGGCAAAACAAGATCAAGGCGCTGCTGCAGCTGATGGAGCACAGCCTGAGGAAG AAGAAGAGGAGGTTGATGAAACCGGCGTGGAGCCCCACGACATTGACTTGGTCATGACACAAGCTGGAGTGTCAAGAAGC AAGGCTGTCAAGGCTCTCAAGACTCACAATGGGGACATTGTTGGTGCCATCATGGAGCTCACTACTTAATTGAGCTTTGT GTTCATCTCTTTTTTGAATAATTTTGGAACTGGTGCAATCCTTGACTTACTGTAGCAATATCATACCAACATATCAATAG TATATGTGTTTAGGTTTACTACTTACATCAATTTTGTTGCTTCCTCTGTTTCTCAACAAACTCTGGAGCCATATTAAGGA CACATTTGTTGGCTTAGTGTTGTGTTCTTTTTTCTTTTACTCATACAGCTATGGTTTTAAATTCTAGGATGGAATTGTGA TTGCAACAAGATTTTGGAGACCTCTACAACTACTTGGAGCTGCAAACTACTGCAACTGCAGTGACATTTATCCCAATTTT TTTGAATATTAATTTCTACAAACGAAATTGTAAGCACGATTGAAATCGATTAATTATAATAAAAGTTGAAGTA
CDS sequence (LotjaGi1g1v0042200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCCAGGTACCGTTCTCGACGCTTCCTCCGACGACCACCAACAACTTCCCTCCGCCACCGACGACAAGAAGAAACC TCAACCGCAGGAGTACGATGATGCTCCTGTTGTTGAGGACGTGCACGATGAAGCCGATGAAGATGAAGATGACGACGAGG ACGATGAGGATGATGAAGATGGTGCTCAAGGTACCACTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAAAAAAGCCGAAAA GCAATGTTGAAGCTTGGGCTGAAGCCTGTCACTGGCGTTAGTAGGGTCACAATCAAGAGAACAAAAAATATACTTTTTTT CATCTCAAAACCTGATGTCTTTAAGAGTCCGAATTCTGAGACATATGTCATATTCGGGGAGGCGAAAATAGAGGACCTGA GCTCGCAGTTGCAGACGCAAGCTGCTCAGCAGTTCAGAATGCCAGATATGGCATCTGTAATGGCAAAACAAGATCAAGGC GCTGCTGCAGCTGATGGAGCACAGCCTGAGGAAGAAGAAGAGGAGGTTGATGAAACCGGCGTGGAGCCCCACGACATTGA CTTGGTCATGACACAAGCTGGAGTGTCAAGAAGCAAGGCTGTCAAGGCTCTCAAGACTCACAATGGGGACATTGTTGGTG CCATCATGGAGCTCACTACTTAA
Protein sequence (LotjaGi1g1v0042200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPGTVLDASSDDHQQLPSATDDKKKPQPQEYDDAPVVEDVHDEADEDEDDDEDDEDDEDGAQGTTEGSKQSRSEKKSRK AMLKLGLKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLSSQLQTQAAQQFRMPDMASVMAKQDQG AAAADGAQPEEEEEEVDETGVEPHDIDLVMTQAGVSRSKAVKALKTHNGDIVGAIMELTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 81 | 81 | - | – | |
| MobiDBLite | 1 | 16 | 16 | - | – | |
| PANTHER | 12 | 220 | 209 | 6.9E-105 | ||
| PANTHER | 12 | 220 | 209 | 6.9E-105 | – | |
| MobiDBLite | 17 | 36 | 20 | - | – | |
| MobiDBLite | 37 | 62 | 26 | - | – | |
| ProSiteProfiles | 72 | 137 | 66 | 17.479 | ||
| SMART | 75 | 131 | 57 | 1.2E-24 | ||
| Pfam | 75 | 130 | 56 | 1.7E-22 | ||
| Gene3D | 81 | 134 | 54 | 5.0E-31 | ||
| MobiDBLite | 156 | 181 | 26 | - | – | |
| MobiDBLite | 167 | 181 | 15 | - | – | |
| Gene3D | 180 | 219 | 40 | 9.6E-14 | – | |
| CDD | 183 | 219 | 37 | 1.87459E-17 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nascent polypeptide-associated complex | A heterodimeric protein complex that can reversibly bind to ribosomes, and is located in direct proximity to newly synthesized polypeptide chains as they emerge from the ribosome. |
Expression pattern of LotjaGi1g1v0042200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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