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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0047400 |
| Transcript ID | LotjaGi1g1v0047400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin response factor; TAIR: AT5G37020.2 auxin response factor 8; Swiss-Prot: sp|A2YG67|ARFQ_ORYSI Auxin response factor 17; TrEMBL-Plants: tr|A0A0S3RJP7|A0A0S3RJP7_PHAAN Auxin response factor; Found in the gene: LotjaGi1g1v0047400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:6423569..6430294) extracted from Lotus japonicus Gifu genome v1.2.
TTACTGATAGCAATTAGCAACCTGTTGGCTGGATACTGGACTATGGTGTCCTTTTGACTTATCCTCTATGATTACACGGG CAATGCTGGGAATGATTTACTTCATGTATACTGACTCATATTAACCTGTGATTTGTATAGGGGAGAAGAAATGTTTGAAT TCTGAACTTTGGCATGCATGTGCTGGCCCTCTGGTTTCCCTGCCTCCCATTGGAAGCCGTGTAGTCTACTTTCCCCAAGG TCACAGTGAGCAGGTCAGTAATACTACTTGTATCTATAGAAGTTGGATTTAGGGCACATACTTATTTTTAGTTTTATTTT GGCCTTTCATGGAAATTTGGTGAAGCTCTTATGCCCAAGAAAGGGCATAAAATTATAAAGATTATCAGAACCTCAACAAT TATGTAGAGCCACATGATCTTGGTAAGCAGATAGTTGTGCTATTTAGCGGAGTAGACTTTAACTTTTTACTTTCCTTTTT TTGGTATATCTGGACGAAAGCAAGTATGCTTGTGCTGTTGCAAGCTCATAATCTTAAGATAGCATAGATTTAGTACTTGA CCAGATAGGATGAATTCAGTTAGTGGATCAGCAATACTCTGAAAGTATGAAAAGCTGTAAGCTGTAAGTTAATGTTAGCG GGCGTCATTTATTAATCTTTAAGTTGTTATTCCTAGAGGGAGGGAGGCCGTCTAAGACCGAGTCAGAGAGATATTCAAAC TGCTATATCGAGCTTTTGATTTCCTGCTTTATGTTGTTGCTGCTGCAGCTCTACCTCATAAATCATATCCGTAATAACAC ATGATATTACTTTATGCTTGAAATGAGCAACTCTTTAGTTAAATTTTTATCAGAATTTCGGTTCTAGAACATTGTGAACA TTGGTCAGTTTGATGATCAAGGTATAAGTCTCCTCTACAATTATGGATATAGCACTACGGTAAAATTTAGCGCTTTGGGT TTTCTAGTAGAGCAGATGGGGCTCTACCGTGCATCAACTTATGATGATTCCATTTTCTAATTTTCTTATGGATCAAACCA TATGTTCATCTTTTGTAATCTATTGTTGCATTTGAAATTTCCAGAGAGCTTATTTCTGTTCATATATTTCACTTTTATAT GTTTTCAGTTCTTTAACAACTTTGATGTTGATTTTACAGGTTGCTGCTTCAACTAACAGGGAAGTAGATGCACATATTCC TAATTACCCCAACTTGCCGCCACAGCTTATCTGTCAACTTCACAATGAAACAATGCATGTAAGAATAATGTTTGCATTAA GTCTACTTCGGAGAATATTTCTATGGTCTTGCATTCTGAACTTATTAAGCATGCAACTTGCAGGCAGATGCTGAAACAGA TGAAGTTTATGCTCAAATGACTCTACAACCTCTAAGTCCAGTACTTACTTTTCTCTTATTTGGTAGTTTATTCTGTACTT TATCATTTTTTGACATGAGTCATTTTGTAGCAAGAGCAAAAGGAGGTGTATCTGCTGCCTGCAGAATTGGGTACTCCAAG CAAACAACCAACCAACTACTTCTGTAAAACATTAACTGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGAA GAGCAGCTGAAAAAGTCTTCCCTCCTCTTGTAGGTCATATTGGCTTCATGATTTTATCAGCTATATATGATGTATAATAA TTAGTTTGTCAGATCTTGACCTGATTGATATATTTTTCTTTAATTTGTTTCTCAGGATTACTCACAGCAGCCTCCTGCTC AAGAACTAATTGCGAGAGATCTTAATGACAACGAATGGAAATTCAGACATATATTCCGAGGTGAGTTTTTCAAGGTTTTT GGAATAAATTATTTGCAGTTAACAGTAATATATTCAGACATATATTCAATCATATATCCCGACTGATTGTGTGTAATGAA ACCAAGGAAAGATTAGCAGTAACTGGCATGATGTGTCATCTGACATAATTTAAATTGCTTAAATTGTTACTTGAATGTTT TTTTTTCTTCTTACTAGTTTTCTATTATCACTTGTAGGTCAGCCTAAAAGGCATCTTCTGACTACAGGATGGAGTGTCTT TGTCAGTGCTAAAAGGCTTGTTGCCGGTGATTCAGTCCTTTTCATCTGGTACCTATAATTATGAAATTTCGATGTACTTG ACTTGTTAAATATTCAACTCATTTTTCTCTTCTTTCATGTTCATCATCTAATCTGTTAGATGTATGTGTAGAGAGAGAGA GAGAGAGACAGAGATAGAGAGAGAGAGAGACAGAGAGAGAGAGAGCAACTTACACTGGTGTAAGATTTCAGCATTCTTGC ATCATTGATGGCTTTACATAGAATGTGATTTTTGCTGACTCAAAATTATTCATTTCCTGGATTAATTGTGTCAAATTTTA ACAACCTTAAGTATATTATCAAGTAGTTCTTATATTCATGTTTCAAAGTATATATGACGTTAGTTTTGTCATATATCAAT TACGAAGCAGCTATATATATACATAGACACACACACACACACACACACACACACAGGATCCATAAGATTGTAACTTTCAA TCCGATGGTGAATTTTAGAATAAAATTATCCGATAAAAAGTTATTGAATGATGCAAGAGCATTAAAGTCTTATACTGGTG TAAGTGATCCCTCATATGTGTATATAGAAATATGCGTGCGTGTGCGTGTGTGCACATGTATGTATATATGTATGGACATG TTATGCTTCAGTTATGCATGGTTTTAGTTATTGGAGGGCTGGACTAAGAGTAGAAATCATGTTATGGTTTATACATTATG TTAAAATAAGCTGTCATGGGAGCTTCTTGCCCTAATAATTAGGTGTTTTCTTATTAGCCTGCTTGCCTAGCAAAATCACC AGTAATTACAGATACATTCTGGACCATGGTTGCATGATCAAAATCTATTGAAATGAATAATAAGATATAATTGTAACAGT TCTCCTGTTTTTATATCAGGAATGAAAAGAATCAACTACTCTTGGGCATTCGACGAGCAAATCGTTCGCAGACCATTATG CCATCATCGGTTCTGTCAAGTGATAGCATGCACATTGGCCTTCTTGCTGCTGCAGCTCATGCAGCTTCCACAAATAGTCG CTTTACCATATTCTATAATCCTAGGTTTGTAATTCTAGTGGGATGATCTGCATTATTACACTACAACCCATGCTGAACTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACAGGGCAAGCCCATCTGAATTTGTAATTCCTTTG GCCAAGTACGTTAAAGCGGTGTATCATACACGAGTTTCTGTCGGCATGCGATTTAGGATGCTCTTTGAAACAGAAGAATC AAGTGTCCGCCGGTTGGTATTACTTGCCTTAGATATTCCCTCATCTAATTACTAAGAGTCCCTTCCCAAAGAAGAAACAT AAGCTCAGTGGCACTAAAATTTCTCATCCCATATATTAAGCATTCAGTTTATGTTTTTGTTCTATGACTTAGAACGGCAA TTGAGTCGGTTAAATTACTTTTCAGGTCCTTATGCTTTTTGGAAAAATAAAAAGGACGCTATAGTTTCAAAATTGTAGTT GGTTCCTCAAAGTGTTTTGTTTTTTTTTCCCCAGTTGGGTTACTGTAATACGCTAAAGGTTGGTTGGGTTCAAGGACCCG ATTTCTCTTTTTGCTACTATAGGGACCTAACCCAATGCCAAATTTGAACAATAGGAACATACTCAATTTTCTCTAAAAGT ACAGGGACCTATGGAGTTATTTGACCTTTAATTTTACTTTCTGAATGTTATTTATGTTAATTTAGGATATTCTTTGTATG GTGATGACCTCATAATACTTTGGTTTGTGTGTTCTACATTGTATTCACAAAGAAAGGATTAATGCTACTCACTGAGTACT GCGGTTATCAATCACAATTGCACACAACTGCACATAATTCCGCCACATGTTTAACCGGAGAACTTCATCATTGGCATTTT CTCCATATTGGTTCTCACCATGGTCAGTTTATATTCTAACCATGGTTATTATTCTAAATAATTTTCTGTGTACCATTTCA TATCACTTTGTTGTGCATGTTTGCTTAGTAACTGTGAATATGACTGTTGATGCATTACTTAGGTCCTCCCAAAAGTTGAA GGTTTTTTACAGATGATTAGCCACACATTATTTGCTTATGTCCTTCATAAAGCCCGTGTTTTGTGAGGTTTTTCTTACAT TGATGCATTCACTCACTGTAACACATTCTTGTCCAGATACGTGGGTACTATAACAGGTATTAGTGATTTAGATTCGGTCC GCTGGCCAAACTCACACTGGCGTTCTGTGAAGGTTTGTCAAGACTGGTCGATTCATCCAACAGCTATATACCTTTGCCAT GAGAAATTTAGCACAGTTATAAATATATCTGGGATTCTTTAAATGTAGTTTAGAATTTCGGTTCTTGAACTTTTTGTCTA CTGGTGTAGGTTGGCTGGGATGAGTCCACTGCGGGGGAGAGGCAGCCGAGAGTTTCCTTGTGGGAGATTGAACCTTTGAC AACATTCCCAATGTATCCATCTTCATTCCCCTTGAGGTTAAGGCGCCCTTGGCTTTCAGGACCACCTTCTTTATATGGTA TATGGTGGTTTTGTTAATAAAATGTGTCATGGAATTCTCTGGGATCATTTTGACTTTTTTTTTTTGCTGTAAGGTACATG ATGATATCTTCACCTATGAGTTAAGCTATTTCTTTGCCTTTCATTTTGTGTAATCAGGTCTCAAGGATGGTGACATGAGC ATTAGTTCTCCATTATTGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAATCATTGAACTTCCAGGGGCTTGGCGT TACGCCATGGGTGCAACCAAGATTGGATGCTTCTACTCCAGGTCTCCATCCAGAGTTATACCAAGCAATGACCTCTGCTG CATTCCAGGAAATGAGGACCATGAATCCTTCAAAATCTTCTTCCCAATCTATGCAGTTTCAGCAGGCTACAAACGTTCCA TCTGATCATGCTTCTCAGGTACAGAGGCCAGTATTATCACAGTCTCAGCCCCAAAACACCTTTGTGCACAATTTTCAAGA AAACCAGGTGCCAACTCAGTCACAACTTCTGCAACAACAGTTGCATCGTTACCACCCATATAGTGATCAGCGGCAACAGC AGCAACTTAAAAACTTGCCTGTTCAGCAGCAGTTACAAAATGTCATTTCTCCTTTGTCCAATTTGTCATCAGGTACACAG TCTCATTCTCCACCCATGCAAGCCCTAGCTTCACACTGCCAACAGCAAAGCTTTCCCAATCCTATCAGGAACCATATTTC CAGCTCTGATGTTTCCACCTTCCAGAGTCTACTAGGTTCATTCTCTCAGGACGGAACATCCCAGTTTCTTAATTTGAATG GGTCCAATTCTGTTCCAACTGCTGCTGCTAATTGTGTATTGCCTCAGGTGGTAAACATGGGAACATCACAATCAAATGTT TCTGAGCTTTCTGCTTTGCCCCCATTTCCTGGAAGAGAACATTCTGCATACCAAGGTGCTGCTGATCCTCAGAGCAATCT TCCATTCGGGATTAACGTTGATCCATCATCTCTTATGCTGCAAAATGGCATGCAAAACCTTAGAAATATAGGGAATGTGA ATGATTCATTATCATTGCCGTTTTCTGCTTCAAACTGTGATGGTGTTACGGGCACTGATTTCCCCCTTAGTTCAAACATC GCAGCATCAAGCTGTGTGGATGAATCAGGCTTCTTGCAGTCTTCTGAAAATGTAGACCAAGCAAATACACCAACTGGAAC CTTTGTTAAGGTAATAGCTAGTTACATTTTTGTTTATAGGTGGTATGCCTTTATTATGTATTTTTTTTTGTGCAATCTTG TTTTAATATCATTTACCAAAATTAAGCATCACTTTATAAACTATACCATGGGTTCAAGTGTCAAGTTAAATATATTTATA TAAGATTTCAATGTTGAATTGGTTCTCTTTTACATGGATATTGGGACTCTTTTTATAAAAGCTCTACATAGTGCTTTTGA TGATTTTTTTAATTGAAACTAGTTTTTGTTTGCATTTCATCTTCTTTTGTAGGACAGCTATTTTTCCATTTAGTAAGTGG ACACTCTCTAATGTCTAGGACTACTCGTCTAGTTTTATTTGTTGAGTATTCTGATGTATGTTTGACAGGTTCACAAGTCA GGGTCCTTCGGGAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGATGAGCTGCGCAGTGAGCTCGCTCGCATGTTTGG CCTTGAAGGCCAACTGGAGGACCCTATGACTCTGAGATCAGGCTGGCAGCTTGTATTTGTTGACAGGGAGAATGACATTC TTCTTCTTGGTGATGATCCCTGGCAGTAAGTGACCCTATGCCTGTTGTCATTTAAGTTCAAGTTGTAGCATATTATGTTA GTTTTTTTCATTGATTAATGAATTAAGAACTCATTTTTACATAATTTGGATTTTTTACTGATTTCTTTTATAGACTTTTT CATTTTGTGAATCTCAATTATCGTTTCTGCTAAATTTTTTTTCCTATGAAGTTTTTCCTCATTGATGTTGAGTACATGTT TATTGCTGAGAAAACCAGAAAAGATTTACTACTCAGTAACTTGCATGTCATCCTAACTAGTATAAGGCTAAAAGTTTATT GCTGAC
CDS sequence (LotjaGi1g1v0047400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATGCAGATGCTGAAACAGATGAAGTTTATGCTCAAATGACTCTACAACCTCTAAGTCCACAAGAGCAAAAGGAGGT GTATCTGCTGCCTGCAGAATTGGGTACTCCAAGCAAACAACCAACCAACTACTTCTGTAAAACATTAACTGCAAGTGATA CCAGCACTCATGGAGGATTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTCCCTCCTCTTGATTACTCACAGCAGCCT CCTGCTCAAGAACTAATTGCGAGAGATCTTAATGACAACGAATGGAAATTCAGACATATATTCCGAGGTCAGCCTAAAAG GCATCTTCTGACTACAGGATGGAGTGTCTTTGTCAGTGCTAAAAGGCTTGTTGCCGGTGATTCAGTCCTTTTCATCTGGA ATGAAAAGAATCAACTACTCTTGGGCATTCGACGAGCAAATCGTTCGCAGACCATTATGCCATCATCGGTTCTGTCAAGT GATAGCATGCACATTGGCCTTCTTGCTGCTGCAGCTCATGCAGCTTCCACAAATAGTCGCTTTACCATATTCTATAATCC TAGGGCAAGCCCATCTGAATTTGTAATTCCTTTGGCCAAGTACGTTAAAGCGGTGTATCATACACGAGTTTCTGTCGGCA TGCGATTTAGGATGCTCTTTGAAACAGAAGAATCAAGTGTCCGCCGATACGTGGGTACTATAACAGGTATTAGTGATTTA GATTCGGTCCGCTGGCCAAACTCACACTGGCGTTCTGTGAAGGTTGGCTGGGATGAGTCCACTGCGGGGGAGAGGCAGCC GAGAGTTTCCTTGTGGGAGATTGAACCTTTGACAACATTCCCAATGTATCCATCTTCATTCCCCTTGAGGTTAAGGCGCC CTTGGCTTTCAGGACCACCTTCTTTATATGGTCTCAAGGATGGTGACATGAGCATTAGTTCTCCATTATTGTGGCTCCAA GGTGGGCTTGGGGATCAAGGAATGCAATCATTGAACTTCCAGGGGCTTGGCGTTACGCCATGGGTGCAACCAAGATTGGA TGCTTCTACTCCAGGTCTCCATCCAGAGTTATACCAAGCAATGACCTCTGCTGCATTCCAGGAAATGAGGACCATGAATC CTTCAAAATCTTCTTCCCAATCTATGCAGTTTCAGCAGGCTACAAACGTTCCATCTGATCATGCTTCTCAGGTACAGAGG CCAGTATTATCACAGTCTCAGCCCCAAAACACCTTTGTGCACAATTTTCAAGAAAACCAGGTGCCAACTCAGTCACAACT TCTGCAACAACAGTTGCATCGTTACCACCCATATAGTGATCAGCGGCAACAGCAGCAACTTAAAAACTTGCCTGTTCAGC AGCAGTTACAAAATGTCATTTCTCCTTTGTCCAATTTGTCATCAGGTACACAGTCTCATTCTCCACCCATGCAAGCCCTA GCTTCACACTGCCAACAGCAAAGCTTTCCCAATCCTATCAGGAACCATATTTCCAGCTCTGATGTTTCCACCTTCCAGAG TCTACTAGGTTCATTCTCTCAGGACGGAACATCCCAGTTTCTTAATTTGAATGGGTCCAATTCTGTTCCAACTGCTGCTG CTAATTGTGTATTGCCTCAGGTGGTAAACATGGGAACATCACAATCAAATGTTTCTGAGCTTTCTGCTTTGCCCCCATTT CCTGGAAGAGAACATTCTGCATACCAAGGTGCTGCTGATCCTCAGAGCAATCTTCCATTCGGGATTAACGTTGATCCATC ATCTCTTATGCTGCAAAATGGCATGCAAAACCTTAGAAATATAGGGAATGTGAATGATTCATTATCATTGCCGTTTTCTG CTTCAAACTGTGATGGTGTTACGGGCACTGATTTCCCCCTTAGTTCAAACATCGCAGCATCAAGCTGTGTGGATGAATCA GGCTTCTTGCAGTCTTCTGAAAATGTAGACCAAGCAAATACACCAACTGGAACCTTTGTTAAGGTTCACAAGTCAGGGTC CTTCGGGAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGATGAGCTGCGCAGTGAGCTCGCTCGCATGTTTGGCCTTG AAGGCCAACTGGAGGACCCTATGACTCTGAGATCAGGCTGGCAGCTTGTATTTGTTGACAGGGAGAATGACATTCTTCTT CTTGGTGATGATCCCTGGCAGTAA
Protein sequence (LotjaGi1g1v0047400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHADAETDEVYAQMTLQPLSPQEQKEVYLLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQP PAQELIARDLNDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRSQTIMPSSVLSS DSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYVGTITGISDL DSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSSFPLRLRRPWLSGPPSLYGLKDGDMSISSPLLWLQ GGLGDQGMQSLNFQGLGVTPWVQPRLDASTPGLHPELYQAMTSAAFQEMRTMNPSKSSSQSMQFQQATNVPSDHASQVQR PVLSQSQPQNTFVHNFQENQVPTQSQLLQQQLHRYHPYSDQRQQQQLKNLPVQQQLQNVISPLSNLSSGTQSHSPPMQAL ASHCQQQSFPNPIRNHISSSDVSTFQSLLGSFSQDGTSQFLNLNGSNSVPTAAANCVLPQVVNMGTSQSNVSELSALPPF PGREHSAYQGAADPQSNLPFGINVDPSSLMLQNGMQNLRNIGNVNDSLSLPFSASNCDGVTGTDFPLSSNIAASSCVDES GFLQSSENVDQANTPTGTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPMTLRSGWQLVFVDRENDILL LGDDPWQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 727 | 727 | 0.0 | – | |
| PANTHER | 1 | 727 | 727 | 0.0 | – | |
| SUPERFAMILY | 30 | 174 | 145 | 1.83E-48 | ||
| Gene3D | 42 | 147 | 106 | 2.0E-42 | ||
| CDD | 44 | 145 | 102 | 1.30063E-22 | ||
| ProSiteProfiles | 45 | 147 | 103 | 12.548 | ||
| Pfam | 45 | 146 | 102 | 7.3E-22 | ||
| SMART | 45 | 147 | 103 | 3.9E-24 | ||
| Pfam | 171 | 254 | 84 | 1.2E-33 | ||
| Gene3D | 209 | 282 | 74 | 2.8E-32 | – | |
| MobiDBLite | 370 | 405 | 36 | - | – | |
| Pfam | 646 | 727 | 82 | 4.2E-5 | ||
| SUPERFAMILY | 650 | 727 | 78 | 8.5E-6 | – | |
| Gene3D | 653 | 727 | 75 | 1.2E-25 | – | |
| ProSiteProfiles | 657 | 727 | 71 | 22.391 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to hormone | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. |
Expression pattern of LotjaGi1g1v0047400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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