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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0047800 |
| Transcript ID | LotjaGi1g1v0047800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT3G22330.1 putative mitochondrial RNA helicase 2; Swiss-Prot: sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53; TrEMBL-Plants: tr|A0A0B2PWD8|A0A0B2PWD8_GLYSO DEAD-box ATP-dependent RNA helicase 9; Found in the gene: LotjaGi1g1v0047800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:6526106..6531855) extracted from Lotus japonicus Gifu genome v1.2.
GAAATTCCATTGGAGGGCACATGATAACAAAGAGTAGACTTGCACACACAAGATCACAACCTCCCTAAATATCTTCCTCT TCTCATTTCTCATAAAACCCTAAACCCCAAATTCACACTCTGTTCCTCCCACCTCAAACCATGATCACCGCAATCCTCAG AAGAGCTTGTTCCGCCCTCTCGCGGCGCGGCGCCGCCACCTTCATCGCCGCCTCAACCGTCACCGGCGAGCTCCGTCAGC TCCCCGTCGTCGCCAGGGCAAGACACTTCCACTCGAATCCAGTTCCCTTGCAGTTCCGCGCCTCTCTCCCTTCTCTCGCC GAATTCGCCGTCGCTGATTTCCCATACGAAGAAGGCTCCAAAAACGATGAAGGGCTCGAGATCAAGAAGCTTGGGATTTC TGAGGAAATCGTCTCTGCCTTGGCCAAGAAAGGAATCTCCAAGCTCTTCCCTATCCAGGTGAGTTTGCGAGGTTTCTAGG GTTTATGCGTTTTCCTGAATCGATTCAATAGTGTATAAATTTAGTAACATTGAGCTGTTGTTAACTTGTTTCTGTTGTTG AATTGTAGAGGGCTGTGCTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCTAGAACAGGAACTGGGAAAACT CTTGCTTTTGGGATACCCATCATGGATAAGATTATTAAGTTCAATGCTAAGCATGGGTTGGTTTTACTTTTATGTTTGTT GAATGATGCTTTTTATGCATTTAATTTTACTTGTTATGCCTTACTATTACTTGAATTTGGCCCCGTTTGGAAGAGCTTAT TCGAGCTTATCTGATAGCATAAACTCTTATGCCAGTGCCAGTGTTTGGGAGAGCATATGCAAACAACTTATGGCTTATTC TTCCATAAGCTGTTTTGAGCTTATTTTCATAAGCTACTCAGGATAGCTTATGAAAAAGAGCTTATGCTTATATATATATA GCTTATTTTCAATTTATTTCAATAAATTTTTTAAATAACTTATGAATAAGCGTTTATGTCATAAGCGCATATGACTATAA GCGCTTAATTAAGCTGTTTTTCCAAACGGGACCTTTGTATCTTTTCTATCTGCTTGACTTTGAAGGTGGATTTGGATTAA GTGATTTGCTAGAAAATATTGATTTGTGGGTTTAACTTGTTATGTTTTGTTGTGTGTGGATGGTGTGGCAGACGAGGGAG GGATCCTTTGGCATTGGCTTTGGCTCCGACTCGAGAACTTGCAAAGCAGGTGGAGAAGGAATTCTATGACTCAGCGCCTA ACTTGGATACGATTTGTGTTTATGGGGGCACTCCCATCTCGCAACAGATGAGGCAACTTGATTATGGTGTTGATGTTGTG GTGGGCACGCCGGGTCGAATTATTGACCTTCTGAACAGAGGCGCTCTAAATTTGAAGGAGGTTCAGTTTATGGTTCTTGA CGAAGCTGATCAGATGCTTCAAATAGGATTTCAGGAAGACGTGGAGAAGATCTTGGATAGGTTGCCCCCTAAACGTCAGA CTCTTATGTTCTCTGCAACTATGCCATATGAGATTAAGCAGTTGACACGCAAGTACCTAAACAATCCCGTAACCATTGAT CTTGTAAGTACATGATTCTATTTTTTCCGTCACTAGCTTTAAGCATTGGGGCAATTATGGTATTGAAATCTCTTATTGGA GTGAGTATCTTCCCAAAATTAAAATGCAGAAAGCAAATCAAGTGGATGAACGCATGGTGCACAAAGTGACAGAACACCAA TAGAAAATAGGATTAAATGAAACCAAATTACAGAAAATACAGCAATCTCTTCCCATTGTTAGAAACTCTTACAGAGATTA TCTCTGTCACTAAAACTGCCAAAACACTACAATAACTACCTCGCAACACTACCACGCCCAGTAGATATTGTTATTAAGAA GTTTATTATAAGTAAATTTACAAGCAATGTGTGTATGTATTTCAGTTGTACTGAAAAAGACTGGGTTTCAATGGTATTCT TATTATCCTTCATAAGAAATTGTAAATTTCAGTCTGTGTTTAGAAAACTATTTTACTGGGATATGTTTATGAAGAAAGGA AAGAAAGTCATGCAGTTTGAGATCAACTTGGTCAGTTATTTTATTTGTTGGTTATTATTTAACCGGGAGCTTATTGGTGC CTCAGGTTGGAGATTCTGACCAGAAGCTAGCAGATGGAATTTCACTGTACTCAATTGTGACTGATAGTTACGTTAAACAG GGAATTCTCGCGCCTCTGATAACAGTATGCCTTCTTACACCATTTCTTATGTGTTAGTTCTGATTAATGATTGTTATCAT CATTGCTGTTTCGTTGATATCAAGATTTATTATTTTTAAATAATTTTTCTAAATATATAAAATATTTTTAACAACAAAAG AGCTAGATAATAAGCCCTATCACTTAACTTGCTTCTGTTGTTTATTCTAAAAAAATGTATCTTCTGGTAGGAGCATGCGA AAGGAGGAAAGTGTATTGTGTTCACTCAAACAAAACGTGATGCTGATCGATTATCACATAGCATGTCGAAAAGTCTTAAA TGTGAGGCCTTGCATGGAGATATATCACAAGCTCAAAGGGAAAGAACTTTAGCTGGCTTCAGAGAGGGTCATTTTAATGT TCTAGTGGCGACTGATGTTGCTTCACGTGGACTTGATATACCTAATGTTGATCTTGTGAGTTCCTTTTTTCCCCAATGAA ATCATTAAGATATCCAATCTATTCTATTCCATGTTTATTGACATTTGAGAATAACTCTTATTTTCCCCATGATGTTTTTC TTTTCTTGTTACATTTTTTCTTAATGTATATGAGATATTTCTTAACTATGTCAGGCAAGGTATGCGTGATTGGTTCATCT CTAATTGGTTACTGTTTATGTATGTTATTTTATGAATTGGATTCTCTACATTTCCCAGTTACCTTCACTTTCATTTCAAA TTCAGGGCAAGTTTGGCAGAAATCAGTAAATAGCTTCTGATATTTCTTATGCTGTATATCCTCGTATTATGTTGAAGTGT GCTTTACAGAATAAATAGAGATTTACGAACTGTGCTGGACTCTTTCTATGCTGCGATAATATTATTAGGTTTTTCGTTAC CATATTGATAGCACCTTGAAGTATGCAAACATCCGATCCCTCTTTCTTCTGTGCTTTATAATCTTCAAGTAGGGGATAAT TTCATAACAGATGCTCAGTTCTTACTTCTTAGCAATGCAGCAATGGCTCTTATTTTCAAATGTTGAAATTAGCATATGTT GGGTGCTATGGAAATCATTGAATTACAAAGCAACCTGCATCATTAATTGTCTGCAAGAGTCTGCTTCTGTTCACGTTTCT ATAAATTTTGAAAAAATTGTAGCTTCTTGTTTGTTGCTTTCTTTGTTATTCTTTTGGATGGATCTGGTCTTTGTCAATGT TTTATGCCACACTTTGTTTCATTAGTCATGTGTATATGCAAGTACTTCGGCATAGAAGATTCTGTTGTTATTCTATTCAC TTTTTACATGTGAGGATCTAACTTTTGTTCCTTGAATAGGTAATACATTATGACCTTCCCAATAATTCAGAGATATTTGT TCATCGATCTGGACGAACAGGTCGTGCCGGTAAGAAAGGAACTGCTATTCTTGTCCATACTGAAGATCAATCCAGGGCTA TTAGGACTATTGAGCGTGATGTGGGCTCTAAATTTAAAGAGGTGAGCTCCTTGCATTCTATCCATTCCTTTGGGCCTATC ATTTTTAATGGAAGTTGTACTTTGTCCATTGCTGATTTAGTAGTTGTAGAAAATGAGGTTAAACTAAAATGGTAGTATAT CCTCCTGCCTAAAATCCACCCTTTTACTGGGATTTTAATCTGTGAAACACCAAGTTATAACATGTAATGTTGAACAACTG ATACAGTGATGTGCCCAAAAAGTTCATTATTAGTTTGTGGACAAGGTCGCGCCAAGCACTGATAAAACTCAAGTTACCGA AAATCTTAATTATTTTTCTGTGTGTCTACTCTTTTGTGGTATACTTTAAGAAAATCACATACAACCTGTGAACTGGTATA CTCTAAGTTATTTTTACTATTATTATTATTTTTTATATTATGATTGTTGTTCTCCATCTTCCGTGCTGATTACATCATCG GTCAGTATTCTTTTTTCTTCAGGAATCTATGTATAATGATTAACTGATCACTTTTGTATTCCAATATTCATGTTTATTAG CTACCAAAGATTGCTGTTGATAGAGCATCAGTGGAATCATTCGGTGGCATGGGGGGTGGGCGTTTTGGTTCATTTGGCGG CGGAGGTATGAGGGATGGAGGTTTTGGCCGTAGTTCTGGATCTGGCCGCTCTGGGGGCTACAGTAACTCTGGATCTGGTC GCTCTAGCTATGGAAATTCTGGGTTTGGCGGATCAAGTAGATCTGGAGGAGGATTTTCTGGTAATTCATCTGGTGAGAAT AGATATGGTGGATCAGGCTCTGGTCGTTCTGGCTCATTTGGTGGAGGTAGATCTGGCGGATCATCCGGTGGATTTAAATT TAGTGGATCAGGTGGTGGTTTTGGGGGATTTGGCGGTTCAGATAAATCTGGTGGTTTTGGAGATTTTGGCTCAAGGTAAG GCTAGCACGTGTGGGGATTCTCGTGACAGTGATCAGAACGATAGAAATCATTTTAACTTCACAAGTATCATAAAAGCACC ATCTTCATTTCTTGGTGGTTTAGTTTTTGTAAAGTTTGGTTGTCATTTCATCTAAAACTTGAAGCTATGTAGGCTATGCT TGTTGTACCACTAAGGATTGGAGAAGGTTATTATTTATAACATAAGAATCACAAGTTCTATTGGGTATAAGACTTTTCTT CTCTGGGGATTTTTGGCTCAACCTCAGCTATATTGCATTATGCTCCATCTATGAAATAGAAAAATGAAGGGCTGTATTCT ATGGATTCCATCAGCTCTCTTTCAAGCAATCAAAACATGATTCTGGTTATGTGTATTTATCATGAAAGTTTTGAAGACAC CTTTATGAAGAGTAGTGATTCAATTTATTTATATGTAATTTATGTTCCTTGAAACAGATAATGGGCACAATGAAATTTCT TAGAAAGCGGCTGGGTGCTTTGTTGTTTTATTTTATACTATGATTTTGTTGAGCAATTAAATTCTTATCTATTATTTTAT ATTAACCTACCTGTTATTTAGTTTCAGCTCCCTTACTCTGGTTGCTCTTGTAGTTTGATAACATAATTTCATAAGAACCA AGTTGATTAATTCCTACCCTTCATTGTATTTGTACTACAAATGTTATATTGTATTAAACCACTGGGGAACAATAGGATAG TTAAATATTTAGAAAGAAAAATGCAGTAAACTGGTTGATTATGAAAAAATTTGTGGCCTGTGGGTGAGGATGCGTAAACA AACCCTAAATCCAAATTGAAACTGGGTTCATATAAAACTTTGAAAATTGATGCAAATCCCTTATAACTAGTAATGTCTCA TGAACCTTATGCGCCAATGTACTTAATAAAATAAAATATTGTCAATAAAATTATGCAAATGTATTAAAAAAAATTGGTAG AAGAAAAATTTAAAAAGAAAAAGAAAGCACTACAAATAGTACAAATGGTGATGGGGGAGAAAGACCATGAGGAGCGTCGT TAGATTAGACCTACCTAGGGTTCACATATGATGTGTGAGAGACTGAGAATAAACGTTTGGATAAAGCTAC
CDS sequence (LotjaGi1g1v0047800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCACCGCAATCCTCAGAAGAGCTTGTTCCGCCCTCTCGCGGCGCGGCGCCGCCACCTTCATCGCCGCCTCAACCGT CACCGGCGAGCTCCGTCAGCTCCCCGTCGTCGCCAGGGCAAGACACTTCCACTCGAATCCAGTTCCCTTGCAGTTCCGCG CCTCTCTCCCTTCTCTCGCCGAATTCGCCGTCGCTGATTTCCCATACGAAGAAGGCTCCAAAAACGATGAAGGGCTCGAG ATCAAGAAGCTTGGGATTTCTGAGGAAATCGTCTCTGCCTTGGCCAAGAAAGGAATCTCCAAGCTCTTCCCTATCCAGAG GGCTGTGCTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCTAGAACAGGAACTGGGAAAACTCTTGCTTTTG GGATACCCATCATGGATAAGATTATTAAGTTCAATGCTAAGCATGGACGAGGGAGGGATCCTTTGGCATTGGCTTTGGCT CCGACTCGAGAACTTGCAAAGCAGGTGGAGAAGGAATTCTATGACTCAGCGCCTAACTTGGATACGATTTGTGTTTATGG GGGCACTCCCATCTCGCAACAGATGAGGCAACTTGATTATGGTGTTGATGTTGTGGTGGGCACGCCGGGTCGAATTATTG ACCTTCTGAACAGAGGCGCTCTAAATTTGAAGGAGGTTCAGTTTATGGTTCTTGACGAAGCTGATCAGATGCTTCAAATA GGATTTCAGGAAGACGTGGAGAAGATCTTGGATAGGTTGCCCCCTAAACGTCAGACTCTTATGTTCTCTGCAACTATGCC ATATGAGATTAAGCAGTTGACACGCAAGTACCTAAACAATCCCGTAACCATTGATCTTGTTGGAGATTCTGACCAGAAGC TAGCAGATGGAATTTCACTGTACTCAATTGTGACTGATAGTTACGTTAAACAGGGAATTCTCGCGCCTCTGATAACAGAG CATGCGAAAGGAGGAAAGTGTATTGTGTTCACTCAAACAAAACGTGATGCTGATCGATTATCACATAGCATGTCGAAAAG TCTTAAATGTGAGGCCTTGCATGGAGATATATCACAAGCTCAAAGGGAAAGAACTTTAGCTGGCTTCAGAGAGGGTCATT TTAATGTTCTAGTGGCGACTGATGTTGCTTCACGTGGACTTGATATACCTAATGTTGATCTTGTAATACATTATGACCTT CCCAATAATTCAGAGATATTTGTTCATCGATCTGGACGAACAGGTCGTGCCGGTAAGAAAGGAACTGCTATTCTTGTCCA TACTGAAGATCAATCCAGGGCTATTAGGACTATTGAGCGTGATGTGGGCTCTAAATTTAAAGAGCTACCAAAGATTGCTG TTGATAGAGCATCAGTGGAATCATTCGGTGGCATGGGGGGTGGGCGTTTTGGTTCATTTGGCGGCGGAGGTATGAGGGAT GGAGGTTTTGGCCGTAGTTCTGGATCTGGCCGCTCTGGGGGCTACAGTAACTCTGGATCTGGTCGCTCTAGCTATGGAAA TTCTGGGTTTGGCGGATCAAGTAGATCTGGAGGAGGATTTTCTGGTAATTCATCTGGTGAGAATAGATATGGTGGATCAG GCTCTGGTCGTTCTGGCTCATTTGGTGGAGGTAGATCTGGCGGATCATCCGGTGGATTTAAATTTAGTGGATCAGGTGGT GGTTTTGGGGGATTTGGCGGTTCAGATAAATCTGGTGGTTTTGGAGATTTTGGCTCAAGGTAA
Protein sequence (LotjaGi1g1v0047800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MITAILRRACSALSRRGAATFIAASTVTGELRQLPVVARARHFHSNPVPLQFRASLPSLAEFAVADFPYEEGSKNDEGLE IKKLGISEEIVSALAKKGISKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIKFNAKHGRGRDPLALALA PTRELAKQVEKEFYDSAPNLDTICVYGGTPISQQMRQLDYGVDVVVGTPGRIIDLLNRGALNLKEVQFMVLDEADQMLQI GFQEDVEKILDRLPPKRQTLMFSATMPYEIKQLTRKYLNNPVTIDLVGDSDQKLADGISLYSIVTDSYVKQGILAPLITE HAKGGKCIVFTQTKRDADRLSHSMSKSLKCEALHGDISQAQRERTLAGFREGHFNVLVATDVASRGLDIPNVDLVIHYDL PNNSEIFVHRSGRTGRAGKKGTAILVHTEDQSRAIRTIERDVGSKFKELPKIAVDRASVESFGGMGGGRFGSFGGGGMRD GGFGRSSGSGRSGGYSNSGSGRSSYGNSGFGGSSRSGGGFSGNSSGENRYGGSGSGRSGSFGGGRSGGSSGGFKFSGSGG GFGGFGGSDKSGGFGDFGSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| PANTHER | 40 | 579 | 540 | 1.4E-229 | – | |
| PANTHER | 40 | 579 | 540 | 1.4E-229 | – | |
| ProSiteProfiles | 79 | 107 | 29 | 8.794 | ||
| Gene3D | 80 | 288 | 209 | 4.1E-76 | – | |
| CDD | 90 | 285 | 196 | 5.64648E-96 | – | |
| SMART | 98 | 301 | 204 | 1.3E-57 | ||
| Pfam | 103 | 272 | 170 | 1.5E-47 | ||
| ProSiteProfiles | 110 | 284 | 175 | 32.924 | ||
| SUPERFAMILY | 153 | 439 | 287 | 2.57E-73 | ||
| CDD | 298 | 425 | 128 | 7.9732E-55 | – | |
| Gene3D | 307 | 462 | 156 | 8.8E-52 | – | |
| ProSiteProfiles | 313 | 457 | 145 | 23.724 | ||
| Pfam | 314 | 418 | 105 | 1.9E-31 | ||
| SMART | 338 | 418 | 81 | 4.9E-33 | ||
| MobiDBLite | 481 | 553 | 73 | - | – | |
| MobiDBLite | 489 | 545 | 57 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0047800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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