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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0049700 |
| Transcript ID | LotjaGi1g1v0049700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin; TAIR: AT4G18910.1 NOD26-like intrinsic protein 1;2; Swiss-Prot: sp|Q8LFP7|NIP12_ARATH Aquaporin NIP1-2; TrEMBL-Plants: tr|I3SMG3|I3SMG3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0049700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:6900952..6902764) extracted from Lotus japonicus Gifu genome v1.2.
TCGACTGCAATGGCTGATAACTCAGGAAGCAATGGAAGCGAGTTGATTTTGAATGTAAACCGTGAAACCTCCAAAAAATG TGATAGCATTGAAGAAGACTGTGTGCCACTTTTGCAGAAGGTACCTCTCCTAATATTTTCTTTCCTTCTCCATGCAAAAA CAACAATTCAAATGCTATCTTTCCAAACATATAAAGTTCCAATATTTTTTAGAATGTAGTCTCTTTTGCAATCAATTTGT TTGGTTAGAAATTACCACAAAAAGTAATGGTTTTGTTGAATATTGTTGAATGCAGTTGGTAGCAGAGGTGATGGGCACAT ATTTCTTGATATTTACGGGTTGTGCTTCGGTGGTGGTGAACCTTAATAATGATAAGGTGGTGACACTTCCTGGGATTGCA ATTGTTTGGGGACTTGCTGTTATGGTTTTGGTTTACTCTATTGGTCACATATCTGGTGCACATTTTAATCCAGCTGTTAC CGTTGCTCATGCTACCACCAAAAGATTTCCCTCGAAGCAGGTGAACCAAATATAACATTTTTCCACTTTCTTTAGTTATT TTTTTAATCGTACCAAATATCCTCCATGAATTAATCATATTTGGCCTGTTATGGACATCAAACCTCTCCTTATCAAAATT TAACGCAATTGCATTCAGAGACTCGAACCTTAGACATTTGCTTATACTTGAATAATCGCGTGGCAGTTGATCTATGCATT TGATGATTTCACTTTTAGTTATTTAAACTGCTATACAGTAGAATGTGCTTAATTTCATTTCTGTTGATACATAATAGGCA TTGTATCTCTTTATTCTTAAATTATTGAATTTTGCATCATTTGAATCACATTGCAGGTACCAGCTTATATCATGGCTCAG GTTATTGGATCCACGCTTGCAAGTGGAACTCTCAGACTTATATTCAGTGGAAAAGATAACCATTTTACAGGAACACTTCC TGCTGGTTCTAACTTACAAGCTTTTGTGGTGGAATTCATAATCACTTTCTTCCTCATGTTCGTCGTCTCTGGAGTTGCCA CAGATAACAGAGCGGTAATGTCTCATGTTCTTACATTATCAACAAAAAAAAATTCATTGGTGATAATATACTAACTTTAT AGACAACATTTCCATAACTTTGCTTAACTATTCATTTTTCCCTTGAATTCTGCAGATTGGTGAGTTGGCTGGGCTTGCAG TTGGATCTACAGTACTGCTAAATGTGTTGTTTGCCGGGTAATTAACCTATCTCAATACCTAATTGAATTAGCCAATTTTA GTGTAGGTTTTAAATAAAATCAAGATGTGACACCCTTTTGGAAACAAATTTAAGCTAAGAACTTACTGATTATGCGTGAA ATTAAATTTGACAGGCCAATTACTGGAGCATCAATGAATCCAGCAAGAAGCTTAGGGCCTGCAATTGTCCACGGTGAGTT CAATGGATTATGGATATACATGGTTGCACCACATCTGGGTGCTATTGCTGGTACATGGGCCTATACTTTCATCAGATACA CAAACAAGCCTGTGCGTGAGCTCACCAAGAGTTCCTCTTTCCTTAAAGGAACTCAGTGATACCCAAGAATTTATTATTTT CTCTTCTTCATTTTGTTGTTTTGAAGATGTGGTGGTGTTTTTGTCAGAAACTAAACTTTATTCTTCAGAAATGTTGAGTC ACAGAGGGATTGATAACAGAGCACCTGTGCGTAGGTAGTGTGTAAGAAATAATCACTAGTTTGGGGTTTTTGCAAATGTA TAACCCAGCAATACAGGACAACTGGTGGAAATGTAAACTAGTGTTTTTTTCAA
CDS sequence (LotjaGi1g1v0049700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATAACTCAGGAAGCAATGGAAGCGAGTTGATTTTGAATGTAAACCGTGAAACCTCCAAAAAATGTGATAGCAT TGAAGAAGACTGTGTGCCACTTTTGCAGAAGTTGGTAGCAGAGGTGATGGGCACATATTTCTTGATATTTACGGGTTGTG CTTCGGTGGTGGTGAACCTTAATAATGATAAGGTGGTGACACTTCCTGGGATTGCAATTGTTTGGGGACTTGCTGTTATG GTTTTGGTTTACTCTATTGGTCACATATCTGGTGCACATTTTAATCCAGCTGTTACCGTTGCTCATGCTACCACCAAAAG ATTTCCCTCGAAGCAGGTACCAGCTTATATCATGGCTCAGGTTATTGGATCCACGCTTGCAAGTGGAACTCTCAGACTTA TATTCAGTGGAAAAGATAACCATTTTACAGGAACACTTCCTGCTGGTTCTAACTTACAAGCTTTTGTGGTGGAATTCATA ATCACTTTCTTCCTCATGTTCGTCGTCTCTGGAGTTGCCACAGATAACAGAGCGATTGGTGAGTTGGCTGGGCTTGCAGT TGGATCTACAGTACTGCTAAATGTGTTGTTTGCCGGGCCAATTACTGGAGCATCAATGAATCCAGCAAGAAGCTTAGGGC CTGCAATTGTCCACGGTGAGTTCAATGGATTATGGATATACATGGTTGCACCACATCTGGGTGCTATTGCTGGTACATGG GCCTATACTTTCATCAGATACACAAACAAGCCTGTGCGTGAGCTCACCAAGAGTTCCTCTTTCCTTAAAGGAACTCAAAA CTAA
Protein sequence (LotjaGi1g1v0049700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADNSGSNGSELILNVNRETSKKCDSIEEDCVPLLQKLVAEVMGTYFLIFTGCASVVVNLNNDKVVTLPGIAIVWGLAVM VLVYSIGHISGAHFNPAVTVAHATTKRFPSKQVPAYIMAQVIGSTLASGTLRLIFSGKDNHFTGTLPAGSNLQAFVVEFI ITFFLMFVVSGVATDNRAIGELAGLAVGSTVLLNVLFAGPITGASMNPARSLGPAIVHGEFNGLWIYMVAPHLGAIAGTW AYTFIRYTNKPVRELTKSSSFLKGTQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 264 | 264 | 7.8E-155 | ||
| Phobius | 1 | 37 | 37 | - | – | |
| PANTHER | 1 | 264 | 264 | 7.8E-155 | – | |
| Gene3D | 22 | 258 | 237 | 7.8E-73 | ||
| Pfam | 32 | 242 | 211 | 1.3E-63 | ||
| SUPERFAMILY | 33 | 256 | 224 | 3.27E-70 | ||
| CDD | 36 | 245 | 210 | 9.2002E-70 | ||
| PRINTS | 36 | 55 | 20 | 4.4E-45 | ||
| Phobius | 38 | 60 | 23 | - | – | |
| TMHMM | 38 | 60 | 23 | - | – | |
| TIGRFAM | 40 | 242 | 203 | 1.5E-60 | ||
| Phobius | 61 | 65 | 5 | - | – | |
| Phobius | 66 | 86 | 21 | - | – | |
| TMHMM | 70 | 92 | 23 | - | – | |
| PRINTS | 75 | 99 | 25 | 4.4E-45 | ||
| Phobius | 87 | 114 | 28 | - | – | |
| ProSitePatterns | 93 | 101 | 9 | - | ||
| PRINTS | 112 | 131 | 20 | 4.4E-45 | ||
| TMHMM | 113 | 135 | 23 | - | – | |
| Phobius | 115 | 135 | 21 | - | – | |
| Phobius | 136 | 154 | 19 | - | – | |
| TMHMM | 150 | 172 | 23 | - | – | |
| Phobius | 155 | 173 | 19 | - | – | |
| PRINTS | 157 | 175 | 19 | 4.4E-45 | ||
| Phobius | 174 | 184 | 11 | - | – | |
| TMHMM | 179 | 201 | 23 | - | – | |
| Phobius | 185 | 204 | 20 | - | – | |
| PRINTS | 188 | 210 | 23 | 4.4E-45 | ||
| Phobius | 205 | 223 | 19 | - | – | |
| TMHMM | 223 | 245 | 23 | - | – | |
| Phobius | 224 | 245 | 22 | - | – | |
| PRINTS | 225 | 245 | 21 | 4.4E-45 | ||
| Phobius | 246 | 267 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0049700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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