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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0050800 |
| Transcript ID | LotjaGi1g1v0050800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin; TAIR: AT4G18910.1 NOD26-like intrinsic protein 1;2; Swiss-Prot: sp|Q8LFP7|NIP12_ARATH Aquaporin NIP1-2; TrEMBL-Plants: tr|I3SMG3|I3SMG3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0050800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7239886..7241841) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTGAGTGTTTATAAATTGGCGTTGCTCTCAGTTTTTCATATATCACTTGTGCTCTAACCTTCAAGAGATAAAGCCTA TTCTATAGCATTCTTCTTGCACCATTTCTAATTAGCTTTTTACTTATTCTCATTTGACTGCAATGGCTGATTATTCAGGA AGCAACGAGGTGATTTTGAATGTGAACAATGAAACCTCCAAAAAATGTGATAGCATTGAGGAAGACTGTGTGCCACTTTT GCAGAAGGTGCCTCTCCTAATCTTTTCTTTCCTTCTCCATACAAAACAACAATTGAAATGCTATGTTTCCCAATTAATCC CAACACATATGGTTTCATAACATAAATTATTGTCTAATGTCTATTATAAAATTCCAATAGTTTTTAGAATGTAGTCTCTT TGGCATTCAGTTTTTGATTATATGGAGCTGGAAATTTTGGTTAGAAATTACAACAACAAAGTAATGCTTTTGTTGATTGT TGAATGCAGTTGGTAGCAGAGGTGTTGGGCACATATTTCTTGATATTTGCAGGTTGTGCTTCGGTGGTGGTGAACCTTAA TAATGATAAGGTGGTGACACTTCCTGGGATTGCAATTGTTTGGGGACTTGCTGTTATGGTTTTGGTTTACTCTATTGGTC ACATCTCTGGTGCACATTTTAATCCAGCTGTTACTGTTGCTCATGCTACCACCAAAAGATTTCCCGTGAAGCAGGTGAAC CAAATATAACCTTTTTTCCACTTTCACTTTGGTTTTTTTTTAATTGAACCAAATATCCTCCGATGATCAATCATATTCGC GCTGGTCTGGTGGACCCTTATGGACACCAAATCTCTCCTTACCAAGATTTAACATAGTTGCATTCACAACAGAGACCTGA ACCTTGACATTTGCATAAACTAAAGCACTCTTGCGGCATTTGATCTATGTGTTTGCTGGTTTCACTTAGGTTATTTAAAG TGCTATATAGGAGAATGTGATTTTCTTTTTGTATTGATACATAATAGGCACCTTATTTTGGTACCTCTTTAATCTTAAAT TATTGAATTTTGTTTTCTTTGAATCACATTGCAGATACCAGCTTATATAATGGCTCAAGTTATTGGATCCACACTTGCAA GTGGAACTCTTAGACTTATATTCAGTGGAAAGGATAACCATTTTACAGGAACACTTCCTGCTGGTTCTGACCTACAAGCT TTTGTGGTGGAATTCATAATCACTTTCTTCCTCATGTTCGTCGTCTCCGGAGTTGCCACAGATAACAGAGCTGTAATGTC TCATGTTCTTACATTAAACAAAAAATGCTTTTATTGGTGATAATATATATACTAACTTTATAAACAAAATTTCCATAACT TTGCTTAATTATTCAATTTTTTCCTTGAATCCTGCAGATTGGCGAGTTGGCTGGGCTTGCAGTTGGATCTACCGTACTGC TAAATGTGTTGTTTGCCGGGTAATTTAACCTATCTCAATACCTAATTGAATTAGACAATTTTAGTGTAGGTTTTAACCAA GAATTCAATAAAATAAAGATGTTACACCCTTTTGGAAACGAAGTTAAGCTAAGAACTTACAGATAATTATGCGTGAAATT AAATCTGACAGGCCAATTACTGGAGCATCAATGAATCCTGCAAGAAGCTTAGGGCCTGCAATTGTCCATGGTGAGTTCAA AGGATTGTGGATATACATGGTCGCACCACATCTGGGTGCTATTGCTGGTACATGGGCCTATACTTTCATCAGATACACAA ACAAGCCTGTGCGTGAGCTCACCAAGAGTTCCTCTTTCCTTAAAGGAGCTGAATGATACCCAAGAATTTATTATTTTCTC TTATTCATTTTGTTGTTTTGAAGATCACCATGTATTAAGGTTCATCTGTAACTGTAAGAAAGAATCACTAGCTAGTGTCT AAGAAATAATCAAGGGGATTTTTGCAAATATATAAC
CDS sequence (LotjaGi1g1v0050800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATTATTCAGGAAGCAACGAGGTGATTTTGAATGTGAACAATGAAACCTCCAAAAAATGTGATAGCATTGAGGA AGACTGTGTGCCACTTTTGCAGAAGTTGGTAGCAGAGGTGTTGGGCACATATTTCTTGATATTTGCAGGTTGTGCTTCGG TGGTGGTGAACCTTAATAATGATAAGGTGGTGACACTTCCTGGGATTGCAATTGTTTGGGGACTTGCTGTTATGGTTTTG GTTTACTCTATTGGTCACATCTCTGGTGCACATTTTAATCCAGCTGTTACTGTTGCTCATGCTACCACCAAAAGATTTCC CGTGAAGCAGATACCAGCTTATATAATGGCTCAAGTTATTGGATCCACACTTGCAAGTGGAACTCTTAGACTTATATTCA GTGGAAAGGATAACCATTTTACAGGAACACTTCCTGCTGGTTCTGACCTACAAGCTTTTGTGGTGGAATTCATAATCACT TTCTTCCTCATGTTCGTCGTCTCCGGAGTTGCCACAGATAACAGAGCTATTGGCGAGTTGGCTGGGCTTGCAGTTGGATC TACCGTACTGCTAAATGTGTTGTTTGCCGGGCCAATTACTGGAGCATCAATGAATCCTGCAAGAAGCTTAGGGCCTGCAA TTGTCCATGGTGAGTTCAAAGGATTGTGGATATACATGGTCGCACCACATCTGGGTGCTATTGCTGGTACATGGGCCTAT ACTTTCATCAGATACACAAACAAGCCTGTGCGTGAGCTCACCAAGAGTTCCTCTTTCCTTAAAGGAGCTGAATGA
Protein sequence (LotjaGi1g1v0050800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADYSGSNEVILNVNNETSKKCDSIEEDCVPLLQKLVAEVLGTYFLIFAGCASVVVNLNNDKVVTLPGIAIVWGLAVMVL VYSIGHISGAHFNPAVTVAHATTKRFPVKQIPAYIMAQVIGSTLASGTLRLIFSGKDNHFTGTLPAGSDLQAFVVEFIIT FFLMFVVSGVATDNRAIGELAGLAVGSTVLLNVLFAGPITGASMNPARSLGPAIVHGEFKGLWIYMVAPHLGAIAGTWAY TFIRYTNKPVRELTKSSSFLKGAE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 35 | 35 | - | – | |
| PANTHER | 5 | 261 | 257 | 6.8E-156 | – | |
| PANTHER | 5 | 261 | 257 | 6.8E-156 | ||
| Gene3D | 20 | 256 | 237 | 1.8E-73 | ||
| Pfam | 30 | 240 | 211 | 3.7E-63 | ||
| SUPERFAMILY | 31 | 254 | 224 | 2.22E-70 | ||
| PRINTS | 34 | 53 | 20 | 2.3E-45 | ||
| CDD | 34 | 243 | 210 | 1.58488E-67 | ||
| TMHMM | 36 | 58 | 23 | - | – | |
| Phobius | 36 | 58 | 23 | - | – | |
| TIGRFAM | 38 | 240 | 203 | 4.7E-60 | ||
| Phobius | 59 | 63 | 5 | - | – | |
| Phobius | 64 | 84 | 21 | - | – | |
| TMHMM | 68 | 90 | 23 | - | – | |
| PRINTS | 73 | 97 | 25 | 2.3E-45 | ||
| Phobius | 85 | 112 | 28 | - | – | |
| ProSitePatterns | 91 | 99 | 9 | - | ||
| PRINTS | 110 | 129 | 20 | 2.3E-45 | ||
| TMHMM | 111 | 133 | 23 | - | – | |
| Phobius | 113 | 133 | 21 | - | – | |
| Phobius | 134 | 152 | 19 | - | – | |
| Phobius | 153 | 171 | 19 | - | – | |
| TMHMM | 153 | 172 | 20 | - | – | |
| PRINTS | 155 | 173 | 19 | 2.3E-45 | ||
| Phobius | 172 | 182 | 11 | - | – | |
| TMHMM | 179 | 201 | 23 | - | – | |
| Phobius | 183 | 202 | 20 | - | – | |
| PRINTS | 186 | 208 | 23 | 2.3E-45 | ||
| Phobius | 203 | 221 | 19 | - | – | |
| TMHMM | 221 | 243 | 23 | - | – | |
| Phobius | 222 | 243 | 22 | - | – | |
| PRINTS | 223 | 243 | 21 | 2.3E-45 | ||
| Phobius | 244 | 264 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0050800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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