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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0050800 |
| Transcript ID | LotjaGi1g1v0050800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin; TAIR: AT4G18910.1 NOD26-like intrinsic protein 1;2; Swiss-Prot: sp|Q8LFP7|NIP12_ARATH Aquaporin NIP1-2; TrEMBL-Plants: tr|I1MEW7|I1MEW7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0050800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7239955..7241651) extracted from Lotus japonicus Gifu genome v1.2.
GAAACCTCCAAAAAATGTGATAGCATTGAGGAAGACTGTGTGCCACTTTTGCAGAAGGTGCCTCTCCTAATCTTTTCTTT CCTTCTCCATACAAAACAACAATTGAAATGCTATGTTTCCCAATTAATCCCAACACATATGGTTTCATAACATAAATTAT TGTCTAATGTCTATTATAAAATTCCAATAGTTTTTAGAATGTAGTCTCTTTGGCATTCAGTTTTTGATTATATGGAGCTG GAAATTTTGGTTAGAAATTACAACAACAAAGTAATGCTTTTGTTGATTGTTGAATGCAGTTGGTAGCAGAGGTGTTGGGC ACATATTTCTTGATATTTGCAGGTTGTGCTTCGGTGGTGGTGAACCTTAATAATGATAAGGTGGTGACACTTCCTGGGAT TGCAATTGTTTGGGGACTTGCTGTTATGGTTTTGGTTTACTCTATTGGTCACATCTCTGGTGCACATTTTAATCCAGCTG TTACTGTTGCTCATGCTACCACCAAAAGATTTCCCGTGAAGCAGGTGAACCAAATATAACCTTTTTTCCACTTTCACTTT GGTTTTTTTTTAATTGAACCAAATATCCTCCGATGATCAATCATATTCGCGCTGGTCTGGTGGACCCTTATGGACACCAA ATCTCTCCTTACCAAGATTTAACATAGTTGCATTCACAACAGAGACCTGAACCTTGACATTTGCATAAACTAAAGCACTC TTGCGGCATTTGATCTATGTGTTTGCTGGTTTCACTTAGGTTATTTAAAGTGCTATATAGGAGAATGTGATTTTCTTTTT GTATTGATACATAATAGGCACCTTATTTTGGTACCTCTTTAATCTTAAATTATTGAATTTTGTTTTCTTTGAATCACATT GCAGATACCAGCTTATATAATGGCTCAAGTTATTGGATCCACACTTGCAAGTGGAACTCTTAGACTTATATTCAGTGGAA AGGATAACCATTTTACAGGAACACTTCCTGCTGGTTCTGACCTACAAGCTTTTGTGGTGGAATTCATAATCACTTTCTTC CTCATGTTCGTCGTCTCCGGAGTTGCCACAGATAACAGAGCTGTAATGTCTCATGTTCTTACATTAAACAAAAAATGCTT TTATTGGTGATAATATATATACTAACTTTATAAACAAAATTTCCATAACTTTGCTTAATTATTCAATTTTTTCCTTGAAT CCTGCAGATTGGCGAGTTGGCTGGGCTTGCAGTTGGATCTACCGTACTGCTAAATGTGTTGTTTGCCGGGTAATTTAACC TATCTCAATACCTAATTGAATTAGACAATTTTAGTGTAGGTTTTAACCAAGAATTCAATAAAATAAAGATGTTACACCCT TTTGGAAACGAAGTTAAGCTAAGAACTTACAGATAATTATGCGTGAAATTAAATCTGACAGGCCAATTACTGGAGCATCA ATGAATCCTGCAAGAAGCTTAGGGCCTGCAATTGTCCATGGTGAGTTCAAAGGATTGTGGATATACATGGTCGCACCACA TCTGGGTGCTATTGCTGGTACATGGGCCTATACTTTCATCAGATACACAAACAAGCCTGTGCGTGAGCTCACCAAGAGTT CCTCTTTCCTTAAAGGAGCTGAATGATACCCAAGAATTTATTATTTTCTCTTATTCATTTTGTTGTTTTGAAGATCACCA TGTATTAAGGTTCATCT
CDS sequence (LotjaGi1g1v0050800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTTGGTTTACTCTATTGGTCACATCTCTGGTGCACATTTTAATCCAGCTGTTACTGTTGCTCATGCTACCACCAA AAGATTTCCCGTGAAGCAGATACCAGCTTATATAATGGCTCAAGTTATTGGATCCACACTTGCAAGTGGAACTCTTAGAC TTATATTCAGTGGAAAGGATAACCATTTTACAGGAACACTTCCTGCTGGTTCTGACCTACAAGCTTTTGTGGTGGAATTC ATAATCACTTTCTTCCTCATGTTCGTCGTCTCCGGAGTTGCCACAGATAACAGAGCTATTGGCGAGTTGGCTGGGCTTGC AGTTGGATCTACCGTACTGCTAAATGTGTTGTTTGCCGGGCCAATTACTGGAGCATCAATGAATCCTGCAAGAAGCTTAG GGCCTGCAATTGTCCATGGTGAGTTCAAAGGATTGTGGATATACATGGTCGCACCACATCTGGGTGCTATTGCTGGTACA TGGGCCTATACTTTCATCAGATACACAAACAAGCCTGTGCGTGAGCTCACCAAGAGTTCCTCTTTCCTTAAAGGAATCAC CATGTATTAA
Protein sequence (LotjaGi1g1v0050800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLVYSIGHISGAHFNPAVTVAHATTKRFPVKQIPAYIMAQVIGSTLASGTLRLIFSGKDNHFTGTLPAGSDLQAFVVEF IITFFLMFVVSGVATDNRAIGELAGLAVGSTVLLNVLFAGPITGASMNPARSLGPAIVHGEFKGLWIYMVAPHLGAIAGT WAYTFIRYTNKPVRELTKSSSFLKGITMY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 185 | 185 | 9.0E-115 | ||
| Phobius | 1 | 35 | 35 | - | – | |
| Gene3D | 1 | 179 | 179 | 4.5E-59 | ||
| PANTHER | 1 | 185 | 185 | 9.0E-115 | – | |
| SUPERFAMILY | 1 | 177 | 177 | 1.44E-56 | ||
| Pfam | 2 | 163 | 162 | 3.3E-50 | ||
| ProSitePatterns | 14 | 22 | 9 | - | ||
| PRINTS | 33 | 52 | 20 | 1.2E-23 | ||
| TMHMM | 34 | 56 | 23 | - | – | |
| Phobius | 36 | 56 | 21 | - | – | |
| Phobius | 57 | 75 | 19 | - | – | |
| Phobius | 76 | 94 | 19 | - | – | |
| TMHMM | 76 | 95 | 20 | - | – | |
| PRINTS | 78 | 96 | 19 | 1.2E-23 | ||
| Phobius | 95 | 105 | 11 | - | – | |
| TMHMM | 102 | 124 | 23 | - | – | |
| Phobius | 106 | 125 | 20 | - | – | |
| PRINTS | 109 | 131 | 23 | 1.2E-23 | ||
| Phobius | 126 | 144 | 19 | - | – | |
| TMHMM | 144 | 166 | 23 | - | – | |
| Phobius | 145 | 166 | 22 | - | – | |
| PRINTS | 146 | 166 | 21 | 1.2E-23 | ||
| Phobius | 167 | 189 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0050800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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