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LotjaGi1g1v0052100.1

Overview

Field Value
Gene ID LotjaGi1g1v0052100
Transcript ID LotjaGi1g1v0052100.1
Lotus japonicus genome version Gifu v1.2
Description Heat shock transcription factor; TAIR: AT1G46264.1 heat shock transcription factor B4; Swiss-Prot: sp|Q7XHZ0|HFB4B_ORYSJ Heat stress transcription factor B-4b; TrEMBL-Plants: tr|A0A0L9UVT9|A0A0L9UVT9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0052100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:7354422..7356970) extracted from Lotus japonicus Gifu genome v1.2.

CAAGCTTTTTGGAGGACTTTTGCAACCTTCAAAGTTTCAGTTTCATGAGTTTTACAGGGAAGAAATAAATGCAAATGTTC TCTTTTAAATCAAATTATTAGACTAGGAATTTGCACAAGACATGAAATCTTTTTTTTTTTTGATAATGAAGACATGAAAT CTTTGTACCCATAAAAAAGTTACACAATTATGAAATCTTCATATTTTTGTGTTAAGCTTTGATTGACAACCCCATCACTC TAAAATCTGGAGAATTCTATAAAAATATACCCCACTGTTTTATCTCCAAAATAAAAATAGAAAGTAGCTCATTTCTCTAG AGGCATCAACCCAACACCACTGCAGCATAGAGCATAATCAATAGCTAAATAATATCTCATTGGATCTTATTATAGTTTAT CCCAAAAAACTCATTGTTTTTACTGACATGGTCTTATGCTTCTTAAAGTTAGTAAACAACAGAAGTAAGAGAGGACAAAG AACAGTTATTTAAGTGATATCTCATATGTTTCTGTTTCATAAAGAAAAATTGTAACGAAGCACAAGATTGGAAGCAACAC TCTGTGGTTCAGTGATGGCTTTCACACTAGACAGGTGTGAAGATAACATGGTGTTCACTATGGAGTCTCAGAAGTCAGTC CCTGCTCCCTTCTTGACAAAGACATACCAGCTTGTTGATGATCCTCACACTGACCACATTGTGTCTTGGGGTGATGATGA AGCGACATTTATTGTGTGGAGGCCACCTGAGTTTGCTAGAGATCTTCTTCCCAACTATTTCAAGCACAACAACTTCTCTA GCTTTGTTAGGCAGCTAAACACCTATGTAAGAATCCACCTATTCTGACTTCTTTGTTCTCTATCCCTCATGATTGTTTTA GCACTACCTCAATGGGTACTTAAGATTTTGTCCAAGACAAATTTTCACCCCATTGAGTTAGAATTTTCAGGATTTACATT CCCTGATTTCACTTCAATCATGCACTCACGCAGTTAAGGAATGTGAACGGTTCGATCAAGGTTAGTCAGCTCGTATAAGA TGGACGAAAGGGATGACCTTCAAATTTGAGCCGTTCAATTCTTGACTGCATAAATTTAAGAATTTCCTGATGGCAGGGAA TCCAAATTTGGTTTATCAGTATGCAAAGCTTGACAAAGTTGGCTTAATCATATTACTAATTGAGAAGAACTTAGAAATGG AATCTTCTCTAGCTTAAAAAGTTAGAGGTCTTCTCTTGATTTTCATTTCACTATTTGAACCGTGAGGCTACCCCGAAGTG TGTAGATCAACTGGTTGAGGTTGTTCTAGTTCTAGCTTAACTAGCGTCTTAGGTTTGAGTCCATATGAATGCAACTGCTT TAAATACTTTGTAGGGAGAACTTTATTGATTCTACCCGACTCGAACATAATTGTTTCAATGGAGGATAATTGTGGTTTAA ACCAAAATAAACTGTGAGGCTAACTCATGATTACCTAGCTATCTGACTGCATTTAAATTTCATCATTATTGCTATAGAAG CTTCATGCTTGACTATGTTAGTGAAACAACATCTACTTTTCCTCTTCTTGCAGGGTTTCAAGAAGATAGTTGCTGATAGG TGGGAGTTTGCAAATGAATACTTCAGAAAAGGAGCTAAGCACCTTTTATGTGAAATCCACAGGAGAAAAACCCCACATCA CTATCAACAAAACTACCATGAAGTCCAACTCCAACCACCACAGTTTCTTCAGCCAGCTGATGAAAGTTTCTGTTGGATTG ATAATACTCCATTACCATCTCCTAAACCAGGCACTGATATCTTAACAGAACTTTCTGAGGACAATCAAAGACTGAGGAGA AAGAACTTGATGCTCTTATCAGAACTCACTCACATGAAGAATCTGTACAATGACATCATATATTTCATCCAAAATCATGT GAGTCCTGCTCAACAAAGAAGTAGCAACAATGCTATCTTCAAAGTTGTGGAACTGGATTCATCATCACCTCAATCACCAA ATGTTATCATACCTACTAAGAGTTGTGCTATGGAGAAGTCTTTCATAACTTCTAGTGAGGACTCTAATAATTCTGTGAAG CTCTTTGGAGTTCCTCTTTGTGGAAAAAAGAGATTGCACCAAAGTAACCTTGATCAACAAGAATAAAGAGCATGATGTTT GGATGAACTTCCCTTTTCTTAGAATCAATTTTAGTACGTACAATCTACTCACAGAAGCTTCTCCTCGTAATTGATTTTGA CTTCACAATCAATTTTAGAAGGACTAATTCGTAGTTAGTGCTTGCCATGACTATTAGCTTGTATTAGACAGCTCTGGTTG TTTTTGTAGGCATTTGAAGAGAATTTTCTTGTCATGTATAGCAGAGGCTGAAGCTAAGATTAATCAGGCTTAGTTACTTA TTCAGAATTCTCCATTAGTTTATCTATTTCTGAAAAAAAGGCAATTGTTTTGTTTGTTCTTTTTGTATCACAAATTAGAA TAGTTAGTTAAATTACCTTTTTCTGTTAATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0052100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTTCACACTAGACAGGTGTGAAGATAACATGGTGTTCACTATGGAGTCTCAGAAGTCAGTCCCTGCTCCCTTCTT GACAAAGACATACCAGCTTGTTGATGATCCTCACACTGACCACATTGTGTCTTGGGGTGATGATGAAGCGACATTTATTG TGTGGAGGCCACCTGAGTTTGCTAGAGATCTTCTTCCCAACTATTTCAAGCACAACAACTTCTCTAGCTTTGTTAGGCAG CTAAACACCTATGGTTTCAAGAAGATAGTTGCTGATAGGTGGGAGTTTGCAAATGAATACTTCAGAAAAGGAGCTAAGCA CCTTTTATGTGAAATCCACAGGAGAAAAACCCCACATCACTATCAACAAAACTACCATGAAGTCCAACTCCAACCACCAC AGTTTCTTCAGCCAGCTGATGAAAGTTTCTGTTGGATTGATAATACTCCATTACCATCTCCTAAACCAGGCACTGATATC TTAACAGAACTTTCTGAGGACAATCAAAGACTGAGGAGAAAGAACTTGATGCTCTTATCAGAACTCACTCACATGAAGAA TCTGTACAATGACATCATATATTTCATCCAAAATCATGTGAGTCCTGCTCAACAAAGAAGTAGCAACAATGCTATCTTCA AAGTTGTGGAACTGGATTCATCATCACCTCAATCACCAAATGTTATCATACCTACTAAGAGTTGTGCTATGGAGAAGTCT TTCATAACTTCTAGTGAGGACTCTAATAATTCTGTGAAGCTCTTTGGAGTTCCTCTTTGTGGAAAAAAGAGATTGCACCA AAGTAACCTTGATCAACAAGAATAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0052100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAFTLDRCEDNMVFTMESQKSVPAPFLTKTYQLVDDPHTDHIVSWGDDEATFIVWRPPEFARDLLPNYFKHNNFSSFVRQ LNTYGFKKIVADRWEFANEYFRKGAKHLLCEIHRRKTPHHYQQNYHEVQLQPPQFLQPADESFCWIDNTPLPSPKPGTDI LTELSEDNQRLRRKNLMLLSELTHMKNLYNDIIYFIQNHVSPAQQRSSNNAIFKVVELDSSSPQSPNVIIPTKSCAMEKS FITSSEDSNNSVKLFGVPLCGKKRLHQSNLDQQE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10015:SF321
2 211 210 7.6E-107 –
PANTHER
PTHR10015
2 211 210 7.6E-107
IPR027725
Gene3D
G3DSA:1.10.10.10
17 117 101 5.2E-38
IPR036388
SMART
SM00415
22 115 94 2.2E-57
IPR000232
SUPERFAMILY
SSF46785
23 115 93 1.63E-33
IPR036390
PRINTS
PR00056
26 49 24 2.4E-19
IPR000232
Pfam
PF00447
26 115 90 1.4E-29
IPR000232
PRINTS
PR00056
64 76 13 2.4E-19
IPR000232
ProSitePatterns
PS00434
65 89 25 -
IPR000232
PRINTS
PR00056
77 89 13 2.4E-19
IPR000232
Coils
Coil
161 181 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0052100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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