Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0054000 |
| Transcript ID | LotjaGi1g1v0054000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein; TAIR: AT3G14470.1 NB-ARC domain-containing disease resistance protein; Swiss-Prot: sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4; TrEMBL-Plants: tr|G7K728|G7K728_MEDTR Disease resistance protein RGA4; Found in the gene: LotjaGi1g1v0054000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7633186..7637756) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTAACTGAAAGTGCTTAACAATTGTTTAGAAGCTCCCCTAAATTAGATGTAGCAACTCTCATGAATTTCATTGATGC ATATGTACTAATGGACAGCCATTATTTTTGACTTTTCAAAGTTCCAACCAATAAAGTAATCACAATAGACTTGTACTCTA ACACGTTGCTAACTTTTGTATATTCATTGCCAAGTTGGGTGACTTGGGTCTTTTCAGCCTTCATGATTGGAATCCAATGA CACTCGTATCTTCCTTGAAGTTTCCTTGATAAAGACTGCATTTAACTAGCTATTTCCAGACTTTTGCTACTACTATATCC ACACTTTGCTTTAGAGCTCATCCAAGCAAAACCAGCCCCTGATCTTCTTCCCTTTTCAACTTTTGCATTTCTGAAAATGG CTGAGGCCTTACTAGGAGCTGTGTTTGAGAAATTGATCTCTCTAGCTCAGAATGAATTTGCAACCATCTCTGGAATCAAG GGAAAGGCTGAGAAGCTATCACACACTCTTGAACTGATCAAGGCTGTTGTTGAAGATGCTGAGAAGAAAGAGATAACAAA CAAATCTATAAAGGTTTGGCTGCAGCAGCTCAAAGATGCTGTCTACGTCCTAGATGATATCCTTGATGAATGTTCCATAG AATCACTTCGACTTCAGGGATTGTCCTCTTTAAAACCAAAGAACATCAAGTTTCGCTATGAGATTGGCAACAAGCTGAAA GAGATTGCAAGGAGATTTGATGAGATTGCTGACTGTAAGAACAAGTTTGCTCTGCAAGAGGGTGTTAGGGAAAGGTCAAC TGAAGTTGCTGAATGGCGCCAAACCAGCTCGTTCATTCCCCAACCTAAACTATATGGACGAGAAGATGATAAGAAGAAGA TTCTGGAGTTTCTTCTCAGCCAAGCACGCGAGTCTGACTTCCTTTCCATCTATCCCATTGTCGGCTTAGGTGGCATGGGA AAAACAACACTTGCTCAAATGGTCTACAATGATGATCAGGTAACAAGCAATTTCAACATCAAAGTTTGGATTTGTGTTTC TGAAAATTTCTCTGTTCAAAGGATTTTGTGCTCCATCATAGAATCTATTACAAAAGCAAAACATGAATGCTTGAATTTAG ATGTAACCGAAAGAAAGGTGCAAGAACTGTTGCAAGGTAAAAGATATTTGCTGGTTTTGGATGACGTGTGGAGAAAAGAT GAAGAAATGGAATTTGGTTTAACCCAAGACAAATGGAATAAGCTGAAATGTTTGTTGTCATGTGCATCCAAAGGAGCTTC AATTTTAGTATCCACTCGCGATATGGAGGTTGCAGCCATCATGGGAACATGCCAAGCTCATCATTTGTGCGGTCTATCTG AGGATGAATGTTTAATGCTATTCAAACAATATGCATTTGGAACTGTAAAAGAGGAGCGTGAAGAGCTTGTAGCTATAGGC AAAGAGATAGTAAAGAAGTGCAGAGGATCACCTCTTGCAGCACAAGCACTAGGAGGTCTCTTGCACTCCAGGAATGAAGA AAAAGAATGGCTTGAAGTTATGAAAAGTGGGATTTGGAATTTAGCGGGTCAACATTCTATTTTGGCTGTCTTGAGATTGA GCTACTTTCATTTAACGCCAACAATAAGACAGTGTTTTGCATTTTGTGCCATGTTTCCTAAAGATACAAAAATCATGAAG GAAGATTTAATTCATCTTTGGATGGCTAATGGGTTTATATCACCAAGGGAAAACTTGGAGGTGGAAGATGTTGGCAATAT GATTTGGAATGAATTGTATCAAAAATCATTCTTTCAAGATATGAAGTTGGTTGATTATTCAGATGTTATTCATTTCAAGA TGCATGATCTTGTCCATGATCTTGCTCTTTCAATAATGGGGCAAGAGTGCATGGTTTTGGGAAACACAAACATGACAGAT TTGTCAACAAGCACCCACCATGTTAGCTTTGACTCTGGTATGGATGTATTGTCACTCCACAAAAGTGCCTTGAAGAAAGT TGAATCCTTGAGAACATTTTACCAGTTAAAAGTCTCCAACAGCGTTTCTGGTTGCATCCCAATACACTGCAGCACTCTTC GGGTATTACGCACAAGTTCTTTTAATTTATCACCACTCAAGAATTTAATTCATTTGAGGTATTTGGAACTTTTCAAGCTT GAGATAGAAACCTTGCCCGACTCAATTTATAGCTTGCGGAAATTGGAAATCTTGAAGTTGAATGATTTGAATAAACTTGT TTGTCTACCTAAAGGCTTGACTTGCTTACAGGATCTTAGACATCTTGTCATTAAAGGTTGTGATTCATTGTCTTGTATGT TCCCTAACATTGGGAAATTATCCCGTCTGAGAACGTTAAGTAAGTACATTGTCAGTTCAGAGATTGGGCATAGCCTGGCA GAATTACATGACTTAAAACTCAGAGGAAATTTGTGCATTGAAGGACTAGAAAATGTTGGCAGTTTATCCGAAGCTCAAGA GGCCAACTTGATGGGTAAAAGAGACATCCAAGAATTAGACTTGCTATGGGACCAGGAGGAAAATACAAAGCCATATGCTA CTAATCCGGAGCTAGTACTTAATGCCCTTCAACCTCACTCAAATCTCAAGAATTTGAAAATTGGATACTATGCAGGATTA CAATTCCCAACCTGGATGGAAATGCTCACCAATTTAGTTTCTCTAGACCTTTTTGGATGCAAGATGTGTGTGCGGCTTCC CTCACTTGGTAAACTACCATATCTAAGAAGAATTAAAATAAGTGAAATGAATGATGTGCAGTATATGGATGATGACGAAT CTGATGATGGTGTGGAGGTGAAAGCTTTCCCGTCATTAGAAGAACTCTCACTATCAGGATGCTCAAAGTTAGAGCGGTTG TTGAAAGTGGAAAGAGGAGAGAATTTCCCCTGTCTTTCTTATTTGGGAATTACTGATTGCCCTAAACTTGAGTTGCCAAG CTGCTGCATTCCGTCACTCAAAAGGCTCCGTCTATTTGATTATACGAATGAGTTACTGAGCTCCCTCTCAGGTTTCAATG GCCTTACCTCCCTTTGGCTTTCCCGTGGCGATGTAGACCTGACATCCTTCCCGGTGGGAACATTGACTTGTCTTCAGACT CTGTGGATACGTGGTTCCAAGGTATTGAAGGAATTACCAAATGAAATCTTCAAAAGCCTCAACAATTTGGAGCATCTGGA AATCGTTAATTGTAGGAAGCTGGAGTCTTTACCAGAGCAAGGGTGGGAAGGTCTCCGCTCCCTTCGAACTCTGCAGATTT GGGATTGTGGTGAATTGAAATCCTTGCCGGATGGTGTTCGACACCTCACTTCACTCCAGCTTTTGGGAATTGGTAGCTGC CCAGCATTAGCCGAGAGGTGTAAAGAGGGAACAGGGGAGGATTGGGACAAGATAGCACACGTTCCCGAAGTACAAATTCT TATCTAATACGATGAAGACTCAGACTGATTCTGAATTCGGTGAGCTCTCTTTTCCCGAACAACTGCCGCTTTTTCTGTTT TTACTTTTCTCGTTGGGTTGTAACTTGTAATGTAAGTAATACATATATGTTTTTATGTTTTTGCAGGCTGGTAATTCTAA TTCAACACCAATTTGGTTACTCTGCTATTTCTGATTCAATTTTTGGTTAATACCCAATCGAGGTGTGTGATAAATATTAT TGGTTTACAATTTTGGACTTTGTGTGTGGGTTTCATGAATATGGTATGACCTGTTTAGGAAAATGTGTACACAAGAAAGA ACTTCAGTTCCTAAAGAACAATTTAATGATTTGAGTGGGTGTGCTTCCATGGTAATACATGATGTGCAAAACATTGCTGA TGTATATTTGAACTTGAATTTTTATCAATAGCTTTGCTGGTTTGGAGTTGGCTATAAATACAATGGGGGAGCTGTATGAG TTCACCAGCTTGGTTCTGCGTGCAATTCTACCGGTTCAAATGTGTGCACAAGAAAGAACTTCAGTGCCTAAAGAACATTT AAATACCAGCCAGAAGAAGATTTGGCTGATGTTATGCCTGCAAACCTTGCTCAGGTATGCGCCTAAAGTCCAGTACTGCC AAATTCAGTGTTTCAAGAAGAATTCCTTCATGGAATTGCACTGTAAGAGAGAATTCCACAGGCTCCATCGAAGACCTTAC AGATATTGCTCCTGAAAATGAAGATGATGAGTTCACACCAGCTAGGTTCCTCACGGAAACACCAGATTCTAATTCAGGAA CAGATGATAGTTAGTTCAAAAGATAAATTCTTTTCCATGTTCTTTCTAATATTTTGGTTGTATTTCTTTCTCCATTGTAA TAAGAAATCTGGTCTTGTAGGATCTCTATTCCTGACTTGTCTTGCATGATTCACTATTTGGTTCCTCACTAAATGTAATT AGTGGATGTTTGGAAATACAACATATTTTAAACATTGGGGTGAGAAATGATTAGGGAAAAAGCTGCTCATAATAGTGTTT GTGAAGGGAGAAGTTGTTTGGAATCAGAAATGTTTGATGCTGCATGGAGATAACTTTCTAATTCCAAGGCTTTTTATTGA CTGACTCTAAC
CDS sequence (LotjaGi1g1v0054000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAGGCCTTACTAGGAGCTGTGTTTGAGAAATTGATCTCTCTAGCTCAGAATGAATTTGCAACCATCTCTGGAAT CAAGGGAAAGGCTGAGAAGCTATCACACACTCTTGAACTGATCAAGGCTGTTGTTGAAGATGCTGAGAAGAAAGAGATAA CAAACAAATCTATAAAGGTTTGGCTGCAGCAGCTCAAAGATGCTGTCTACGTCCTAGATGATATCCTTGATGAATGTTCC ATAGAATCACTTCGACTTCAGGGATTGTCCTCTTTAAAACCAAAGAACATCAAGTTTCGCTATGAGATTGGCAACAAGCT GAAAGAGATTGCAAGGAGATTTGATGAGATTGCTGACTGTAAGAACAAGTTTGCTCTGCAAGAGGGTGTTAGGGAAAGGT CAACTGAAGTTGCTGAATGGCGCCAAACCAGCTCGTTCATTCCCCAACCTAAACTATATGGACGAGAAGATGATAAGAAG AAGATTCTGGAGTTTCTTCTCAGCCAAGCACGCGAGTCTGACTTCCTTTCCATCTATCCCATTGTCGGCTTAGGTGGCAT GGGAAAAACAACACTTGCTCAAATGGTCTACAATGATGATCAGGTAACAAGCAATTTCAACATCAAAGTTTGGATTTGTG TTTCTGAAAATTTCTCTGTTCAAAGGATTTTGTGCTCCATCATAGAATCTATTACAAAAGCAAAACATGAATGCTTGAAT TTAGATGTAACCGAAAGAAAGGTGCAAGAACTGTTGCAAGGTAAAAGATATTTGCTGGTTTTGGATGACGTGTGGAGAAA AGATGAAGAAATGGAATTTGGTTTAACCCAAGACAAATGGAATAAGCTGAAATGTTTGTTGTCATGTGCATCCAAAGGAG CTTCAATTTTAGTATCCACTCGCGATATGGAGGTTGCAGCCATCATGGGAACATGCCAAGCTCATCATTTGTGCGGTCTA TCTGAGGATGAATGTTTAATGCTATTCAAACAATATGCATTTGGAACTGTAAAAGAGGAGCGTGAAGAGCTTGTAGCTAT AGGCAAAGAGATAGTAAAGAAGTGCAGAGGATCACCTCTTGCAGCACAAGCACTAGGAGGTCTCTTGCACTCCAGGAATG AAGAAAAAGAATGGCTTGAAGTTATGAAAAGTGGGATTTGGAATTTAGCGGGTCAACATTCTATTTTGGCTGTCTTGAGA TTGAGCTACTTTCATTTAACGCCAACAATAAGACAGTGTTTTGCATTTTGTGCCATGTTTCCTAAAGATACAAAAATCAT GAAGGAAGATTTAATTCATCTTTGGATGGCTAATGGGTTTATATCACCAAGGGAAAACTTGGAGGTGGAAGATGTTGGCA ATATGATTTGGAATGAATTGTATCAAAAATCATTCTTTCAAGATATGAAGTTGGTTGATTATTCAGATGTTATTCATTTC AAGATGCATGATCTTGTCCATGATCTTGCTCTTTCAATAATGGGGCAAGAGTGCATGGTTTTGGGAAACACAAACATGAC AGATTTGTCAACAAGCACCCACCATGTTAGCTTTGACTCTGGTATGGATGTATTGTCACTCCACAAAAGTGCCTTGAAGA AAGTTGAATCCTTGAGAACATTTTACCAGTTAAAAGTCTCCAACAGCGTTTCTGGTTGCATCCCAATACACTGCAGCACT CTTCGGGTATTACGCACAAGTTCTTTTAATTTATCACCACTCAAGAATTTAATTCATTTGAGGTATTTGGAACTTTTCAA GCTTGAGATAGAAACCTTGCCCGACTCAATTTATAGCTTGCGGAAATTGGAAATCTTGAAGTTGAATGATTTGAATAAAC TTGTTTGTCTACCTAAAGGCTTGACTTGCTTACAGGATCTTAGACATCTTGTCATTAAAGGTTGTGATTCATTGTCTTGT ATGTTCCCTAACATTGGGAAATTATCCCGTCTGAGAACGTTAAGTAAGTACATTGTCAGTTCAGAGATTGGGCATAGCCT GGCAGAATTACATGACTTAAAACTCAGAGGAAATTTGTGCATTGAAGGACTAGAAAATGTTGGCAGTTTATCCGAAGCTC AAGAGGCCAACTTGATGGGTAAAAGAGACATCCAAGAATTAGACTTGCTATGGGACCAGGAGGAAAATACAAAGCCATAT GCTACTAATCCGGAGCTAGTACTTAATGCCCTTCAACCTCACTCAAATCTCAAGAATTTGAAAATTGGATACTATGCAGG ATTACAATTCCCAACCTGGATGGAAATGCTCACCAATTTAGTTTCTCTAGACCTTTTTGGATGCAAGATGTGTGTGCGGC TTCCCTCACTTGGTAAACTACCATATCTAAGAAGAATTAAAATAAGTGAAATGAATGATGTGCAGTATATGGATGATGAC GAATCTGATGATGGTGTGGAGGTGAAAGCTTTCCCGTCATTAGAAGAACTCTCACTATCAGGATGCTCAAAGTTAGAGCG GTTGTTGAAAGTGGAAAGAGGAGAGAATTTCCCCTGTCTTTCTTATTTGGGAATTACTGATTGCCCTAAACTTGAGTTGC CAAGCTGCTGCATTCCGTCACTCAAAAGGCTCCGTCTATTTGATTATACGAATGAGTTACTGAGCTCCCTCTCAGGTTTC AATGGCCTTACCTCCCTTTGGCTTTCCCGTGGCGATGTAGACCTGACATCCTTCCCGGTGGGAACATTGACTTGTCTTCA GACTCTGTGGATACGTGGTTCCAAGGTATTGAAGGAATTACCAAATGAAATCTTCAAAAGCCTCAACAATTTGGAGCATC TGGAAATCGTTAATTGTAGGAAGCTGGAGTCTTTACCAGAGCAAGGGTGGGAAGGTCTCCGCTCCCTTCGAACTCTGCAG ATTTGGGATTGTGGTGAATTGAAATCCTTGCCGGATGGTGTTCGACACCTCACTTCACTCCAGCTTTTGGGAATTGGTAG CTGCCCAGCATTAGCCGAGAGGTGTAAAGAGGGAACAGGGGAGGATTGGGACAAGATAGCACACGTTCCCGAAGTACAAA TTCTTATCTAA
Protein sequence (LotjaGi1g1v0054000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEALLGAVFEKLISLAQNEFATISGIKGKAEKLSHTLELIKAVVEDAEKKEITNKSIKVWLQQLKDAVYVLDDILDECS IESLRLQGLSSLKPKNIKFRYEIGNKLKEIARRFDEIADCKNKFALQEGVRERSTEVAEWRQTSSFIPQPKLYGREDDKK KILEFLLSQARESDFLSIYPIVGLGGMGKTTLAQMVYNDDQVTSNFNIKVWICVSENFSVQRILCSIIESITKAKHECLN LDVTERKVQELLQGKRYLLVLDDVWRKDEEMEFGLTQDKWNKLKCLLSCASKGASILVSTRDMEVAAIMGTCQAHHLCGL SEDECLMLFKQYAFGTVKEEREELVAIGKEIVKKCRGSPLAAQALGGLLHSRNEEKEWLEVMKSGIWNLAGQHSILAVLR LSYFHLTPTIRQCFAFCAMFPKDTKIMKEDLIHLWMANGFISPRENLEVEDVGNMIWNELYQKSFFQDMKLVDYSDVIHF KMHDLVHDLALSIMGQECMVLGNTNMTDLSTSTHHVSFDSGMDVLSLHKSALKKVESLRTFYQLKVSNSVSGCIPIHCST LRVLRTSSFNLSPLKNLIHLRYLELFKLEIETLPDSIYSLRKLEILKLNDLNKLVCLPKGLTCLQDLRHLVIKGCDSLSC MFPNIGKLSRLRTLSKYIVSSEIGHSLAELHDLKLRGNLCIEGLENVGSLSEAQEANLMGKRDIQELDLLWDQEENTKPY ATNPELVLNALQPHSNLKNLKIGYYAGLQFPTWMEMLTNLVSLDLFGCKMCVRLPSLGKLPYLRRIKISEMNDVQYMDDD ESDDGVEVKAFPSLEELSLSGCSKLERLLKVERGENFPCLSYLGITDCPKLELPSCCIPSLKRLRLFDYTNELLSSLSGF NGLTSLWLSRGDVDLTSFPVGTLTCLQTLWIRGSKVLKELPNEIFKSLNNLEHLEIVNCRKLESLPEQGWEGLRSLRTLQ IWDCGELKSLPDGVRHLTSLQLLGIGSCPALAERCKEGTGEDWDKIAHVPEVQILI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 2 | 119 | 118 | 6.11096E-16 | ||
| Pfam | 6 | 101 | 96 | 1.1E-24 | ||
| PANTHER | 23 | 805 | 783 | 7.9E-174 | – | |
| PANTHER | 23 | 805 | 783 | 7.9E-174 | – | |
| Coils | 31 | 51 | 21 | - | – | |
| Gene3D | 135 | 314 | 180 | 6.7E-36 | – | |
| SUPERFAMILY | 138 | 417 | 280 | 1.72E-64 | ||
| Pfam | 155 | 383 | 229 | 4.6E-50 | ||
| PRINTS | 178 | 193 | 16 | 4.6E-18 | – | |
| PRINTS | 251 | 265 | 15 | 4.6E-18 | – | |
| PRINTS | 355 | 369 | 15 | 4.6E-18 | – | |
| SUPERFAMILY | 481 | 886 | 406 | 9.35E-30 | – | |
| Gene3D | 554 | 659 | 106 | 7.9E-8 | ||
| Gene3D | 660 | 868 | 209 | 3.0E-24 | ||
| PRINTS | 809 | 825 | 17 | 4.6E-18 | – | |
| SUPERFAMILY | 857 | 988 | 132 | 1.3E-16 | – | |
| Gene3D | 870 | 997 | 128 | 4.4E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi1g1v0054000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…