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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0054100 |
| Transcript ID | LotjaGi1g1v0054100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB-related transcription factor; TAIR: AT5G55020.1 myb domain protein 120; Swiss-Prot: sp|A2WW87|GAM1_ORYSI Transcription factor GAMYB; TrEMBL-Plants: tr|A0A0B0MQC6|A0A0B0MQC6_GOSAR Transcription factor GAMYB; Found in the gene: LotjaGi1g1v0054100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7639250..7640137) extracted from Lotus japonicus Gifu genome v1.2.
CAAATGGAAAAGGAAAAAGTACCGGAAGGGATAATGATGCAGAAGAAGACATGAGGAAAGGACCATGGACACCAGAGGAG GATGAAATTTTAGCAGCATATGTCATAAAGCATGGAGAGGGGAACTGGAACATAGTACAAAACAACACAGGACTTTATCG TTGTGGAAAAAGCTGTCGACTAAGATGGACAAATCACCTTAGACCAAACTTGAGAAAAGGTCCGTTTAGTAAAGATGAAC AGCGCGTAGTTGTGGAGATGCATGCTAGGTTGGGAAACAAGTGGTCTAAAATGGCTCAACAGGTTGGTTTTGGTTTCTAT GAACTTATTTGAAAGTATTGTGGGTTTGAATTTTCATTGAACTATCAAAAGTTGTGTGTTTTATATATTGTTTTTGTTTT AGCAGTTGCCTGGACGAACAGACAATGAGATAAAGAACTTTTGGCACACAAGAAGAAAGAAATTGGAACGAGTTAAAATG CCACTATACCCTCCTCATCTCAAAGTGTTGCATGATGACCAAGGTTGTTCCTCCCGTCAGCAACCCAATGCCTCGCCCTC ACAAGAAGATGAATTTGAAAAGCCAGAAGAGAAATTCAAAACACAGAAACCAAGTCAGGAACATCCACCATATACACCAT CAATTGGCTTTATAAGTGAAAGCATACCACCATCAATTGGCTTTATAAGTGAAAGCATACCTCATGAACAAGCTTCAGAT TCACCAATTATGCCGCCCTCAGAGCCACTTCATGATTCAGATATACTATACTACAATAGTTTGGGGACTACTAGTACAGA CAGTGGTCTCCTTGATTAGTGAGTGGATTATACTCATCAAACACTTTCTAAGCTTTTCTTAAATCATTGTTTTTCGCATT TGTCTCCT
CDS sequence (LotjaGi1g1v0054100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAAAGGACCATGGACACCAGAGGAGGATGAAATTTTAGCAGCATATGTCATAAAGCATGGAGAGGGGAACTGGAA CATAGTACAAAACAACACAGGACTTTATCGTTGTGGAAAAAGCTGTCGACTAAGATGGACAAATCACCTTAGACCAAACT TGAGAAAAGGTCCGTTTAGTAAAGATGAACAGCGCGTAGTTGTGGAGATGCATGCTAGGTTGGGAAACAAGTGGTCTAAA ATGGCTCAACAGTTGCCTGGACGAACAGACAATGAGATAAAGAACTTTTGGCACACAAGAAGAAAGAAATTGGAACGAGT TAAAATGCCACTATACCCTCCTCATCTCAAAGTGTTGCATGATGACCAAGGTTGTTCCTCCCGTCAGCAACCCAATGCCT CGCCCTCACAAGAAGATGAATTTGAAAAGCCAGAAGAGAAATTCAAAACACAGAAACCAAGTCAGGAACATCCACCATAT ACACCATCAATTGGCTTTATAAGTGAAAGCATACCACCATCAATTGGCTTTATAAGTGAAAGCATACCTCATGAACAAGC TTCAGATTCACCAATTATGCCGCCCTCAGAGCCACTTCATGATTCAGATATACTATACTACAATAGTTTGGGGACTACTA GTACAGACAGTGGTCTCCTTGATTAG
Protein sequence (LotjaGi1g1v0054100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKGPWTPEEDEILAAYVIKHGEGNWNIVQNNTGLYRCGKSCRLRWTNHLRPNLRKGPFSKDEQRVVVEMHARLGNKWSK MAQQLPGRTDNEIKNFWHTRRKKLERVKMPLYPPHLKVLHDDQGCSSRQQPNASPSQEDEFEKPEEKFKTQKPSQEHPPY TPSIGFISESIPPSIGFISESIPHEQASDSPIMPPSEPLHDSDILYYNSLGTTSTDSGLLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 54 | 54 | 24.594 | ||
| PANTHER | 1 | 179 | 179 | 8.5E-77 | ||
| PANTHER | 1 | 179 | 179 | 8.5E-77 | – | |
| Gene3D | 1 | 56 | 56 | 1.7E-19 | – | |
| SUPERFAMILY | 2 | 97 | 96 | 1.8E-29 | ||
| SMART | 2 | 52 | 51 | 4.3E-15 | ||
| Pfam | 3 | 50 | 48 | 1.5E-14 | ||
| CDD | 5 | 50 | 46 | 2.28987E-12 | ||
| SMART | 55 | 103 | 49 | 7.7E-12 | ||
| ProSiteProfiles | 55 | 105 | 51 | 18.052 | ||
| Pfam | 56 | 99 | 44 | 2.7E-11 | ||
| CDD | 58 | 99 | 42 | 1.69268E-9 | ||
| Gene3D | 58 | 140 | 83 | 3.5E-17 | – | |
| MobiDBLite | 118 | 203 | 86 | - | – | |
| MobiDBLite | 123 | 137 | 15 | - | – | |
| MobiDBLite | 138 | 153 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0054100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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