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LotjaGi1g1v0054500.4

Overview

Field Value
Gene ID LotjaGi1g1v0054500
Transcript ID LotjaGi1g1v0054500.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Kinase family protein; TAIR: AT5G10270.1 cyclin-dependent kinase C;1; Swiss-Prot: sp|Q9LFT8|CDKC1_ARATH Cyclin-dependent kinase C-1; TrEMBL-Plants: tr|I1JIS7|I1JIS7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0054500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:7666142..7669552) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCGAAGGAGATCGAAACCGGTGAAATCGTTGCTCTGAAGAGGATACGGATGGACAATGAGAGAGAAGGGGTATGTTA ATTCTTTGAGTCTTGAATGTTTAATTTTTTTACTTAGATTATGGGTGCATAACATATTTTCATTGTACATGTTATTCAGT TGGCCTAAATCAGAATTTGCAGTCAAAGTCTGTTAGTTCTGTATTGTGAATTTCTCCTAGGAACTGTATTGTAAATTTTT TCATTGCAGTTTCCTATAACTGCTATACGAGAAATCAAAATTTTAAAGAAACTGCACCATGAGAATGTGATCGAGCTGAA AGAAATTGTGACTTCGCCAGGTATACTTTAAAGATATAGATGTGCTTTGTTTTCAAAATGGTTTAGGATTTATAAATAAC ATTGTGTTTCTTCTTTCAGGCCCTGAGAGAGATGGACAAGGAAGGCCAGGCAAGTCATCCGTTCTCACATTATTAGCTAA TTACTGAATAATAGTACTCATCTATTTTCATATTATTAGCCAATTACTGAATAATAGTACATAACATGCTTTATAGCTCT AGCTGTGTGAATATATCCATCAACTCCCATTGGATTCTCTTTGTTCCATACTAACCTTTTTCACTTGTTTCTCATTGTTG TTTTTGGGATTGCAGATGGTAACAAATATAAAGGTGGTATTTACATGGTCTTTGAATACATGGACCATGATTTAACAGGT CTTGCTGACCGACCTGAAATGAGATTTACAGTTCCTCAAATTAAGGTACGAGTGTTTATACTAATAATTGATTTTTCATA TATTAATATTTGTTTATTTTGATGTTGTCTGAGTTGCGTTTCCTTTCTTAAGTGTTATATGAGACAGCTTTTGACGGGGC TTCACTACTGTCATGTAAATCAAGTACTTCATCGTGATATCAAAGGTCTGTGTATTAACAGGGTTATGGTTTTAGATCAG AATGTTGGAAATATTACTACTTTTTGATGTATTTTATTCTGCTGCAGGATCAAATCTTCTTATAGACAATGAAGGAAATT TGAAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAGTGAGCAAAATGCAAATCTTACAAATCGTGTCATTACGTTA TGGTACAGGTAATTGGTGTCAAATTTTTCTTGAGGAGATTGAATAGGGCAGAGGGAGGGGCTATTTGATTGGCAAGTGCA TGTATTGAGTTTGTTTTATTTATGTAGACCGCCTGAGTTGCTTCTGGGGACAACGAAGTATGGACCAGCTGTAGATATGT GGTCTGTTGGGTGCATTTTTGCTGAGCTTCTTCATGGGAAGCCCATTTTTCCTGGGAAAGATGAGGTTAGTGATATTTTA TATATGATAGTTAAGAGAAATGGGTGCCGAAGTGGTGAGTGATTGATGTGGTGTAGTATTTAGGGTAGATTTGATTTTAT CCTGTATATTGCCAGTAGGAAAAAAAAGATTCTTTATATTACATTCTGATTCTCCGGATTCAGTCTCTAAATACATCCTG CCATATTCCTTTCTCTGCATATTATAAGCATATCTCAGTGCAACTCAATTGTTATGATCATTGATGTCTATGTATTTCGA ATCTATGGATTCTACTGAAACATAGTACGCTAATAACAATGTTTGGCTAGACTGTTGCATCTAATTTGCTCAATACTTTT CAGAAATCTCATTATTACATCTTTGTCATATCTTGCTTGTATTATATATGGCCTATGCTTTATATCCTAATGGTAATATT TTTTGGTACAGCTTAAATGTAATACATCTTTTGTTTGTAATTATTGTAGCCAGAACAATTAAACAAAATATTTGAGCTGT GTGGAGCACCAGATGAGGTCAATTGGCCTGGGGTTTCTAAGACACCTTGGTATAATCAATTTAAGCCATCAAGGCCAATG AAAAGACGTTTGAGGGATGTTTTCAGGCAGTAAGTATCAAGGCTTGAGCATCATCACTAAGCATATATGTACTTTTATCC ACCTAGGAAATAAGGATACAGTCCATATTCTGTGCTTGTAAATTTATCTAAATAGCTTGTTTCCCTGTGACTTTATAGTT TTGATCGTCATGCTCTAGAATTGTTGGACAAGATGCTGACACTTGATCCGGCTCAGGTATCATTTCTTCACTTGTGGGTC TGATTTATTAATTGTTAAATGATTTTGAATTGCTATTTTAAGTGCTTCAATTCCCTGTTATTCCTGTTTTATTTTATATC ACTCGACCTGTTTTATATGACGAGGTTAGCCATAGCTACTATTGTTATTTTGTTATTATTATGTATCTCATATACTGACA GATCTCATACTATGCGTAAGATAAAAATGGTGTACATCTGGTTTCCTTTGTGAGAAACTTTCGTAATGTAATAAAAAAAA TTGAGACAAGAAAAAAAAAAGAATTGATGGCATAATGCTAGTTTAGACGACTTTGAGAAGTTTTTTTTTTTTTTGCTATG AATATGTCATTTGTAACATAGTTGGGTTTGTGTTATGATTTGCTTATTCACCTCTAGGCTATATGCTTTATGAAAATTAA TTTTGTTCATGATTTGTTTCTTAATATTTGTTTGTAAATTTGATTTTTGTAGAGAATTACGGCGAAAGATGCACTTGATG CTGAGTATTTCTGGACAGATCCATTACCATGCGATCCCAAGAGGTAAGACCTAGTTTCTATTTTCAAAATATTAATTTTC CTTGAAATTGTTAGATCGTGATAGGAATAAATACTTGTTCCATTCACTCCTTCGGCTCCTTCCCTTTTAACTTTATTTTG TTTTATGCAACTAATCATTTACTGGTCAACATTCTTCAACTTGCTACTTCTCTTTTGTGTGGCTTAGTTTACCCAAGTAT GAGTCATCACATGAATTTCAAACAAAGAAAAAGCGCCAGCAACAAAGGCAAAATGAAGAAATTGCAAAGCGTCAGAAAAT GCAACAACCACAGCCGCACACTCGTCTTCCCCCAATTCAGCAGCCTGGGCAACATGCCCAAATGCGGTCAGGATCTAAGC AGCCAATTCATGGCTCTCAACCTCAAGTTGTTGCAGGACCTTCTCATCATTATGGGAGGGCTCGAGGTCCACCTGGTGGG CCAGGAAGATATCCTCCCAGTGGAAACCCCAGCGGAGGATACAATCACCCAAATCGTGGAGGTCAAGGAGGAGGTGGTTA CGGCAGCGGGCCTTATCCTCCTCAAGGGCGAGGGGCACCTTATGGGTCCAGTGGTATGCCTGGTGGTGGTCCTCGTGGTG GAGGTGGCGGTTATGGGGCTGGAGCTCCAAACTATCCTCAACAAGGCGGTCCATATGGGGGCTCAGCAGCTGGTCGTGGC TCAAACATGATGGGTGGAAATCGCAATCAACAGTATGGTTGGCAGCAATAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0054500.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGAAGGAGATCGAAACCGGTGAAATCGTTGCTCTGAAGAGGATACGGATGGACAATGAGAGAGAAGGGTTTCCTAT AACTGCTATACGAGAAATCAAAATTTTAAAGAAACTGCACCATGAGAATGTGATCGAGCTGAAAGAAATTGTGACTTCGC CAGGCCCTGAGAGAGATGGACAAGGAAGGCCAGATGGTAACAAATATAAAGGTGGTATTTACATGGTCTTTGAATACATG GACCATGATTTAACAGGTCTTGCTGACCGACCTGAAATGAGATTTACAGTTCCTCAAATTAAGTGTTATATGAGACAGCT TTTGACGGGGCTTCACTACTGTCATGTAAATCAAGTACTTCATCGTGATATCAAAGGATCAAATCTTCTTATAGACAATG AAGGAAATTTGAAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAGTGAGCAAAATGCAAATCTTACAAATCGTGTC ATTACGTTATGGTACAGACCGCCTGAGTTGCTTCTGGGGACAACGAAGTATGGACCAGCTGTAGATATGTGGTCTGTTGG GTGCATTTTTGCTGAGCTTCTTCATGGGAAGCCCATTTTTCCTGGGAAAGATGAGCCAGAACAATTAAACAAAATATTTG AGCTGTGTGGAGCACCAGATGAGGTCAATTGGCCTGGGGTTTCTAAGACACCTTGGTATAATCAATTTAAGCCATCAAGG CCAATGAAAAGACGTTTGAGGGATGTTTTCAGGCATTTTGATCGTCATGCTCTAGAATTGTTGGACAAGATGCTGACACT TGATCCGGCTCAGAGAATTACGGCGAAAGATGCACTTGATGCTGAGTATTTCTGGACAGATCCATTACCATGCGATCCCA AGAGTTTACCCAAGTATGAGTCATCACATGAATTTCAAACAAAGAAAAAGCGCCAGCAACAAAGGCAAAATGAAGAAATT GCAAAGCGTCAGAAAATGCAACAACCACAGCCGCACACTCGTCTTCCCCCAATTCAGCAGCCTGGGCAACATGCCCAAAT GCGGTCAGGATCTAAGCAGCCAATTCATGGCTCTCAACCTCAAGTTGTTGCAGGACCTTCTCATCATTATGGGAGGGCTC GAGGTCCACCTGGTGGGCCAGGAAGATATCCTCCCAGTGGAAACCCCAGCGGAGGATACAATCACCCAAATCGTGGAGGT CAAGGAGGAGGTGGTTACGGCAGCGGGCCTTATCCTCCTCAAGGGCGAGGGGCACCTTATGGGTCCAGTGGTATGCCTGG TGGTGGTCCTCGTGGTGGAGGTGGCGGTTATGGGGCTGGAGCTCCAAACTATCCTCAACAAGGCGGTCCATATGGGGGCT CAGCAGCTGGTCGTGGCTCAAACATGATGGGTGGAAATCGCAATCAACAGTATGGTTGGCAGCAATAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0054500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAKEIETGEIVALKRIRMDNEREGFPITAIREIKILKKLHHENVIELKEIVTSPGPERDGQGRPDGNKYKGGIYMVFEYM DHDLTGLADRPEMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSSEQNANLTNRV ITLWYRPPELLLGTTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKTPWYNQFKPSR PMKRRLRDVFRHFDRHALELLDKMLTLDPAQRITAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEEI AKRQKMQQPQPHTRLPPIQQPGQHAQMRSGSKQPIHGSQPQVVAGPSHHYGRARGPPGGPGRYPPSGNPSGGYNHPNRGG QGGGGYGSGPYPPQGRGAPYGSSGMPGGGPRGGGGGYGAGAPNYPQQGGPYGGSAAGRGSNMMGGNRNQQYGWQQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24056:SF364
1 468 468 7.0E-260 –
ProSiteProfiles
PS50011
1 284 284 40.753
IPR000719
Gene3D
G3DSA:3.30.200.20
1 81 81 2.0E-25 –
PANTHER
PTHR24056
1 468 468 7.0E-260 –
CDD
cd07840
1 284 284 0.0 –
SMART
SM00220
1 284 284 1.3E-76
IPR000719
SUPERFAMILY
SSF56112
2 292 291 1.03E-88
IPR011009
Pfam
PF00069
2 284 283 3.5E-66
IPR000719
Gene3D
G3DSA:1.10.510.10
82 324 243 4.0E-78 –
ProSitePatterns
PS00108
119 131 13 -
IPR008271
MobiDBLite
mobidb-lite
295 475 181 - –
MobiDBLite
mobidb-lite
297 322 26 - –
MobiDBLite
mobidb-lite
323 360 38 - –
MobiDBLite
mobidb-lite
461 475 15 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0054500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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