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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0056200 |
| Transcript ID | LotjaGi1g1v0056200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor-like protein kinase family; TAIR: AT5G21090.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|Q94F62|BAK1_ARATH BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1; TrEMBL-Plants: tr|I3STZ2|I3STZ2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0056200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7886934..7891233) extracted from Lotus japonicus Gifu genome v1.2.
GCTCAACACTCCTCTCAACCGCCATCAACTAAGAGGGGCAACGACGAGCGTTCACGAACGACAGAGAGAACGCGATGGAG CCTCAAGTGAGAGAAATATGTTACATGAATATTTACCTTATTACTCTTTTGTCACACTTTCGATCCTAACCGCTCAATTA AAAAACATTCCTCCAATTTCACATCCAACGGTTCTAATCAATGGTTCATCGGTGGACCCAAAAACAAAATGCCCATCCAT CCATGAACAATGAATAAGAGTCCATTTCAAGACTCGAGTTGAGTGAAGATTCCTTCTTGGGTTCTTCTTCTTCTTCTTCT TCCTGCTCATTTCCCTTTCTCTCTCCTCTCGCTCCAAACCCTAACCATCACAATCCCAATTTAGCAACCAAATTACTCTT CTCTCTGTGCTCGGTTTCAGCACCATGGCACCAACCTTCTTCTCCTTCTTCTTCTGCTGCGTCGTTTCCATATACCTAAC CCTCGTTCCCTTCGCCGTCGCGAATTCCGAAGGCGACGCTCTCTACGCCTTCAAGCAGAGCCTCTCCGACCCCGATAACG TGCTTCAGAGCTGGGATGCCACGCTTGTCAGCCCCTGTACCTGGTTCCATGTCACCTGCCAGGACAACAGTGTCACACGA GTGTATCTCTCTCATTCTGATTTTTCTTCTGTGCTTAATTATCCAAATTAGTTGTCAATTCACCTTCTTCTTGTTGTGTT TGATGTTTACTTGGATCGTTAACAGCGATTGATCGAGCTTTTGTTTTCGGGGTTTAGGTTAACTAGTTCAATTGGGAATT GGTTTAATTTTTCACTTTTTTTTGTAATAAAAACTTTAACTTGTCTTTGTTTTCATGAATTTTGTGTACTTTGATAGTTC CCTTACCTGTTTCAATGCTTTAGCTAGTGTTTCTTTGATGTGTTATTTTCTGGGTATGAGAATTTTCTTGCTGCGAGTTT AATTATGGTGTTTTTTTCAGGGATCTTGGAAATTTGAACCTGTCTGGACATTTGGTACCTGACCTTGGGAATCTGCACTC TCTACAGTATCTGTATGCTCTCTAACCTTGGCTTTACTTAATATTCTGTATGTGCTGATGTTGTGATTCCAAGCATGTTA AATGTGCTCATGTAGTCATGTTATTATAGAAACAATTGACATATTAGTGTTAGGGTGCATTTGGGTAAAAGAACTTAATT AAACTTATGGTAACTAATAAGTGGTTATTCATAAGCTAATTTGAGAAGTTTGTTGAGATAAGCTCAAAATAGTTTATAGG TAGGCATACATGCTTATCCATAAGTTAACACTAAGCTGAGTAGCTTATGAAAATAAGCTCAAAATAGTTTACTGCTAGGT CGTTAGCTATAAGGTTACCCAATTAAACCATTAGCGGTGCTATAAGATTAAGATAAACTCAAATTAGCTCTTTCAAATGC ACCATTTTGTATTTGCTGTGGCTATCTTCTTGTGAATTGCAGTGTTCCATACTTCCATATTTATTGATGTTAACTGTGTT TCTCTTGTTGGATGTAGTGAGCTGTATGAAAACAACATTCAAGGAACTATTCCTGAAGAGCTTGGAAACCTGCAGAGCCT AATTAGCTTGGACTTGTACCACAACAATGTATCAGGCAGCATCCCATCTTCGTTGGGGAACTTGAAGAATCTTCGCTTTT TGTAAGTAAGATTAATATGGTGTTACACTCTTTATTCATGATTAGATTGTGCTTTGCATATCCTTTTTCTTCCCCTTTAT TTGAATGACTTAAAAGTCTGTGGATGATTCAGGGGAAAATTCAAGGGCATTCGTACTAATACTTATTGTGTACTATGATG TTTTTGAGCTGTACATTTTATATAAATTTGAGGCATGGTGAATTATGGCCTTGTTGGTTTAGTATATGGCTCTTTCATTA TGAGCTATAGGGCATATATGTGATATAAGACAGCTTAATCACTGGAGTAGATGTTAAATGAATTGCTTCAAATATTCACA CACTCACTCACGCCCAACATACAAACTTGCTCAAAGAAGGAAAAGTGAGTTTCAAGGGTAAGGTGAATACTAATTAGACC AATACCATGTGAGTTTAAAGATCAATTTATTTATTTCTGGGTGCGGTACTGCATGAACAGTGACATGGCAAATACTCAAG AAGAAATTGTTTCAACCATATTAGGATACATGCTTCATCAACTAGATCTGAAGACCTAAAACATTATTGAAAACCCTCGA CTCTTATGCTCAAGGCTAAGTTTGAGAATTCAACTTGATGATTCACACAAAAGGAAATGGTTGGTATAAACATGGTTAAG CGACACGCAAAACCCCTAAATTAAACCTCTAGTTACTGAATAAAAGGCAACATGGGGCTATGAAGTTCCCACTATGGCAG GGTCTACGGAAGGGTTCGTCTCATCTTGGGTCTATTCTAGGCAGATTCCCCACTAGCCACATAGCAACAATTACAACAGT TGTTCCAAGGCTTCCATTTAAAGTGTGACCTAATATTTAGTGAATGACATAATAAAAACCATATATTATATGGTGTTACT TACCACATTGGTAACTGCTATGGCTTTGGTTATTATTTTTTGACATAAATTATTCAGTACTTGCTTGTTTCTTATCAGTA TTTTCTTTGCAGACGACTTAACAACAATCATCTAACCGGTCAGATCCCCAAGTCACTCAGTACTCTTCCAAATCTTAAAG TTTTGTAAGTCATATTGTGGTCTATATGTGATTAATGAAATTATGCGAAGGTATCACAAAGATGTGCCGTTTTAGTAAGT CTAAACATTCACTTTATTTTCAGGGATGTCTCCAACAATAACTTATGCGGTCCAATTCCTACCTCTGGGCCATTTGAGCA TATTCCATTGGATAAGTAGGTCCCAGAATATCTCGTATTTCCTATCTATTTAACTCTTAGCATGTGGCTTTTTTCTTAGT CTCCATGTGGTGCTATTCGCGTTGGTTTATGCTTACTACTCCCTTCTTTCTTGCATCTATTTTTAATTTGGGTTTTGGGC TTCTGGCATCTTGTATTTCCTATCTGTTTGCTTTTTCGGCTTACCCTTGTCTGCCATACACTGGTGTAGCTAGTACTCTT ATTGCATGTGTGTGATGCTACATTCTGTTTGATAGGATGCTCTGGTGCATGCACTTGCAATGATGGTTGTTAGATTGCAT TTTGTTGTGTTATAAGTTAGTCATAATTGGTGTTCCTGCAATTTTCTGGTACCTTGATTCTGAAATCTTTACAAGTTTGC CTTTTAGAATCTAGCTAGAATATATTTTCTGCTAGCATGGTATCTTCCTTTTACTTATGTGAAGTGTCTTCTGTTTCAAT GCTGTAGCTTTGAGAATAACCCTCGATTGGAAGGTCCAGAGTTGCTGGGGCTTGTAAATTATGACACGAACTGCTCGTGA ATAACATGTGATGCCGTAGGATCTCAATCTGTGTTGAATGATATATAAAATTGAAGTGTATTACCTCATAATGTAATGGG CGGTGGTATATGTAATATCTGGTATATGTAAATTTACATACTGATGAGCATTGGCTATTGTGATCTTCCAATGGTGTTGC AGACATGAGTATGTATCGATATAATACTAAAAAAAAACTTGGTCACTGATAAAATATTTGTGATGCTTTGCTCTCTATCT CATCTACTAACACTGTTTGTTAGTTCCTATTGCACGCCCTCTTAGAATTGGTGGGTATAAATAATTTTAAGATATGAGGT GTGTTACCCCTCCTTAGGTGGTGGCAATTATGAAGCAAAGGATGCATGAAAATGGTTACTGAAACCTTGTGTTTTGTATG GCTTTTTGAAAAGTGGATTTGCTCTTCTTTGTTGCTTTTTGTTCTTCGAGTCAAGTGTTTTGTTGCTTGATGTTGAGGGA GGTTACCCTCTTAAATGAAGAAAAAGTACATCAGTACATGATATTATTTTGTCATAGATTGGTAAAATATTAGATAACAT AGTAAGTTGTTTTGTATTGCCACTAATTATGTGCTTCTCAAAGGATGTAACATTGATTCGAGTTCGTTTGAATATCGAAA GTGTTTGCGATGCATTATTTTTTTTCGTTTTCGTACTTTTTAACTGGTACCCAAACGAGCTCTGAATGTATGCGGCATTC AACTCTAGACAAGCATACCCTCCACTGTTCAGTTTCAGTTGTAAACTAGTTTACAATATCAGGGTTGGTTTTGTTTTCTG TTTTTTTAAACACATATTGGACATTACATTCAGAATTTGGTTCAGAATCAAACAATTATC
CDS sequence (LotjaGi1g1v0056200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACCAACCTTCTTCTCCTTCTTCTTCTGCTGCGTCGTTTCCATATACCTAACCCTCGTTCCCTTCGCCGTCGCGAA TTCCGAAGGCGACGCTCTCTACGCCTTCAAGCAGAGCCTCTCCGACCCCGATAACGTGCTTCAGAGCTGGGATGCCACGC TTGTCAGCCCCTGTACCTGGTTCCATGTCACCTGCCAGGACAACAGTGTCACACGAGTGGATCTTGGAAATTTGAACCTG TCTGGACATTTGGTACCTGACCTTGGGAATCTGCACTCTCTACAGTATCTTGAGCTGTATGAAAACAACATTCAAGGAAC TATTCCTGAAGAGCTTGGAAACCTGCAGAGCCTAATTAGCTTGGACTTGTACCACAACAATGTATCAGGCAGCATCCCAT CTTCGTTGGGGAACTTGAAGAATCTTCGCTTTTTACGACTTAACAACAATCATCTAACCGGTCAGATCCCCAAGTCACTC AGTACTCTTCCAAATCTTAAAGTTTTGGATGTCTCCAACAATAACTTATGCGGTCCAATTCCTACCTCTGGGCCATTTGA GCATATTCCATTGGATAACTTTGAGAATAACCCTCGATTGGAAGGTCCAGAGTTGCTGGGGCTTGTAAATTATGACACGA ACTGCTCGTGA
Protein sequence (LotjaGi1g1v0056200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPTFFSFFFCCVVSIYLTLVPFAVANSEGDALYAFKQSLSDPDNVLQSWDATLVSPCTWFHVTCQDNSVTRVDLGNLNL SGHLVPDLGNLHSLQYLELYENNIQGTIPEELGNLQSLISLDLYHNNVSGSIPSSLGNLKNLRFLRLNNNHLTGQIPKSL STLPNLKVLDVSNNNLCGPIPTSGPFEHIPLDNFENNPRLEGPELLGLVNYDTNCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 8 | 21 | 14 | - | – | |
| PANTHER | 17 | 203 | 187 | 4.7E-51 | – | |
| PANTHER | 17 | 203 | 187 | 4.7E-51 | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Gene3D | 22 | 208 | 187 | 6.1E-61 | ||
| Pfam | 26 | 65 | 40 | 1.0E-12 | ||
| SUPERFAMILY | 27 | 185 | 159 | 1.32E-42 | – | |
| Phobius | 27 | 216 | 190 | - | – | |
| PRINTS | 118 | 131 | 14 | 5.0E-5 | – | |
| Pfam | 140 | 181 | 42 | 6.2E-8 | ||
| PRINTS | 163 | 176 | 14 | 5.0E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0056200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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