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LotjaGi1g1v0057400.3

Overview

Field Value
Gene ID LotjaGi1g1v0057400
Transcript ID LotjaGi1g1v0057400.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description NBS-LRR type disease resistance protein; TAIR: AT3G14470.1 NB-ARC domain-containing disease resistance protein; Swiss-Prot: sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3; TrEMBL-Plants: tr|G7K723|G7K723_MEDTR Disease resistance protein RGA4; Found in the gene: LotjaGi1g1v0057400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:8030348..8035830) extracted from Lotus japonicus Gifu genome v1.2.

AGACTTTTGCTACCACTATCCACACTTTGCTTCAGATCTCATCCAAGCAAAACCAGTCCCCGATATTGTTTCCTTTTCAA CTTTTGCATTTCTGAAAATGGCTGAGGCTTTACTTGGAGCTGTGTTTGAGAAATTGCTCTCCCTAGCTCAGAATGAATTT GCAACCATGTCTGGAATCCAGGGAAAGGCTAAGAAGCTATCAAACACTCTTGAACTGATCAAGGCTGTTGTTGAAGATGC TGAGGAGAAACAGATAACAAACAAACCTATAAAGGTTTGGCTGCAGCAGCTCAAAGATGCTGTGTACATCCTAGATGATA TCCTTGATGAATGTTCCATAGAATCACTTCGACTTAAAGGATTGTCCTCTTTAAAACCGAAGAGCATCAAATTTCGCTAT GAGATTGGCAACAAGCTGAAAGAGATTTCTAGGAGATTTGATGAGATTGCTGACCAGAAGAACAAGTATGTTCTGCAAGA GGTTGTCAGGGAAAGGTCAACTGATGTAGCTGAATGGCGCCAAACCAGCTCGATAATTCCCCAAGCTAAACTATATGGAA GAGAAGATGATAAGGAGAAGATTGTGAAGTTTCTTCTCAGCCAAGCACGCGAGTCTGACTTCCTCTCCATCTATCCTATT GTCGGCTTAGGAGGCATGGGAAAAACAACACTTGCTCAAATGGTCTACAATGATGATCAGGTAACAAGCAATTTCAACAT CAAAGTTTGGATTTGTGTTTCTGAAAATTTCTCTGTCCAGAGGATTTTGTGCTCCATCATAGAATCTATTACAAAAGCAA AACATGATTGCTTGAATTTAGATGTAACAGAAAGAAAGGTGCAAGAATTGTTGCAAGGTAAAAGATATTTTCTAGTTTTG GATGACGTGTGGAGGAAAAATGAAGAAATGAAATTTGGTTTAACCCAAGACAAATGGAATAAGCTGAAATGTGTGTTGTC ATGTGCATCCAAAGGAGCTTCTATTTTAGTATCCACTCGTGATATGAAGGTTGCAGCAATTATGGGAACGTGCCAAGCTC ATCATTTGTGCGGTCTCTCAGAGGATGAATGTTGGATGCTCTTCAAACAATATGCATTTGGAACTGAAAAAGAAGAGCGT GCAGAGCTGGTACCTATTGGAAAAGAGATAGTAAAGACGTGCGGAGGATCACCTCTTGCAGCACAAGCACTAGGAGGTCT CTTGTTCTCAAGGTCTGAGGAAAAGGAATGGCTTGAAGTTATGGAAAGTGGGCTTTGGAATTTAGAAGGTGAAAATTCTA TTTTGGCTGCCTTGAGATTGAGCTACTTTCATTTAACGCCAACATTAAGGCAGTGTTTTGCATTTTGTGCCATATTTCCC AAAGATACAGAAATCATGAAGGAAGATTTGATACATCTTTGGATGGCTAATGGGTTTATTTCATCTAGGGCAAACTTGGA GGTTGAAGATGTTGGCAATATGATTTGGAATGAATTGTATCAAAAATCATTCTTTCAAGATATGAAGTTGGTTGATTATT CAGATGTTATTCATTTCAAGATGCATGATCTTGTCCATGATCTTGCTCTTTCAATAATGGGGCAAGAGTGCATGGTTTTG GGAAACACAAACATGACAGATTTGTCAACAAGCACCCACCATGTTAGCTTTGACTCTGGTATGGATGTATTGTCACTCCA CAAAAGTGCCTTGAAGAAAGTTGAATCCTTGAGAACATTTTACCAGTTAAAAGTCTCCAACAACGTTTCTGGTTGCATCC CAATACACTGCAGCACTCTTCGGGTATTACGCACAAGTTCTTTTAATTTATCACCACTCAAGAATTTAATTCATTTGAGG TATTTGGAACTTTTCAAGCTTGAGATAGAAACCTTGCCCGACTCAATTTATAGCTTGCGGAAATTGGAAATCTTGAAATT GAGATCTTTGAAAAAACTTGTTTGTCTACCTAAAGACTTGACTTGCTTACAGGATCTTAGACATCTTGTCATTGAAGATT GTTATTCATTGTCTTGTATGTTCCCTAACATTGGGAAATTATCCCGTCTGAGAACGTTAAGTAAGTACATTGTCAGTTCA GAGATTGGGCATAGCCTGGCAGAATTACATGACTTAAAACTCAGAGGAAATTTGCACATTAAAGGACTAGAAAATGTTGG CAGTTTATCCGAAGCTCAAGAGGCCAACTTGATGGGTAAAAAAGACATCCACAAATTACAGTTGATATGGGACAAGGAGG TCCACTCAAAGCCATATGCTACTAATCCGAAGCTAGTACTTAATGCTCTTCAACCTCACTCAAATCTCAAGAATTTGAAA ATAGAATACTCTGCAGGATTACAATTACCGACCTGGATGGAAATGCTCACCAATTTAGTTTCTCTAAAGCTTTATGGATG CGAGATGTGTGTGCGGCTTCCCTCACTTGGTAAACTACCATATCTAAGAAGAATTAAAATAAGTGAAATGAATGATGTGC AGTATATGGATGATGACGAATCTGATGATGGTGTGGAGGTGAAAGCTTTCCCGTCATTAGAAAAACTCTCACTATCAGGA TGCTCAAAGTTAGAGCGGTTGTTGAAAGTGGAAAGAGGAGAGAATTTCCCCTGTCTTTCTGATTTGGCAATTCGTAATTG CCCTAAACTTGAGTTGCCAAGCTGCTGCATTCCGTCACTCAAAAAGCTCCATCTAGAGGATTATACTGATGATTTACTGA GGTCCCTCTCATGTTTCAATGGCCTTACCTCCCTTCGGCTTTACGCTGGCGATGTAGACCTGACATCCTTCCCGGTGGGA ACATTGACTTGTCTTCAGACTCTGTGGATACGTGGTTCCAAGGTATTGAAGGAATTACCAAATGAAATCTTCAAAAACCT CAACAATTTGGAGTATCTGAGCATCGGGTGGAGCAGCGAGCTGGAGTCTTTACCAGAGCAAGGGTGGGAAGGTCTCCGCT CCCTTCGAACTCTGGGGTTTTGGGATTGTGGTGAATTGAAATCCTTGCCGGATGGTGTTCGACACCTCACTTCACTCCAG CTTTTGAACATCTATTATTGTAGGAAGCTGGAGTCTTTACCAGAGCAAGGGTGGGAAGGTCTCCGCTCCCTTCGAACTCT GGGGTTTTGGTATTGTGGTGAATTGAAATCCTTGCCGGATGGTGTTCGACACCTCACTTCACTCCAGCTTTTGAACATCC GTTATTGTAGGAAGCTGGAGTCTTTACCAGAGCAAGGGTGGGAAGGTCTCCGCTCCCTTCGAACTCTGCAGATTTCAGGA TGTGGTGAATTGAAATCCTTGCCGGATGGTGTTCGACACCTCACTTCACTCCAGCTTTTGAGTATTGCGCACTGCCCAGC ATTAGCCGAGAGGTGTAAAGAGGGAACAGGGGAGGATTGGGACAAGATAGCACACGTTTCCAAAGTACAAATTATTAATT CTGAATTCGGTAACGTCTCTTTTCCCGAACAACTCCCGCTTTTTCTGTTATTACTTTTCTCGTTGGGTAGTAATGTAATG TAAGTAATACATATATGTTTTTATGTTTTTGCAGGCTTGTAATTCTAATTCAACACCAATTTGGTTACTCTGCTATTTCT GATTCAATTTTTGGTTAATACCCAATCGAGGTGTGTGATTGTTAATGTATATTTGAACTTTTTGAATATTATACTGGTTC TGCTTCTGCATGCACTTCTACTGGTTCAAATGTGTGGAAAATTTACTAAATTATTACCTTTCTACTGGTTCTTCTTAGGA ATTTATTTGTGTATCACTTTCTAAGGATGATTTAGTGGATTAGTGGTTAACTACCTTGTGTATATTGTGAAATTTAACTC AGGAGCAAAGAAGGGAAATAAGGATTGATTAGTCATGATGAAAAGGAGGTGGAAAAGGCCTGCAATAACAAAGAAAACCA GCAATGACAGCAAGCTAAAGTTGCAGAATATGAAGAACATGATGAAAAGGAACTTTTTGTTAACAATTATAATGCTGCAG AGAGTGTGACATGGATTTCTCATGTATAATCTTTCCTGAAACTGGAAAAGGTCATTTCCAAGGTGACCAACAGACAGAAA AATTGTAGTTGGCACTTCAAGTCTTCAACAGATGTGAAAGTAATCATGGATGGTTTTTCAGTTCCTGGAATTAGCCGAAT GGTGTCCAACACCTCACTTCACTCCAGCTTTTGAGAATTCAGGACTGCCCAACATTAGCTGAGAGGTGTAAGGAGGGAAC AGAGGTGGATTTGGACAAGATAGCGCACGTTCCCAAAGTTGAATTCTGCAACGCGTAATTTTGCCTAATGGGGGAGAACT TGAACAACAATTTGGGTACTCTGCTATTTCTGATTCTATTTTTGGTTAATACATATCAGATGTCTTTGATCTTCCTTTTG GAGACTGGATTCCCTGACCAACTCTCAATCGAGGTGTGTGATAAATATTACAATCCTCTATTATAATTATTTGTTTTTTA TTGTTTTCAATTTTTTACTTTGTGTGTGGGTTTGATGAATATGGTATGGCCTGTTACAATCTTTTTGCAGTATTTATGTG AACTTGAATTATTTTGATTGATGATGTTTGTTGGACCTGCAAATTTTTGAGGTATTGTAGGTTAAGTAGTGTAGGAAACT TTGATGATTTGTGTGAGTGTGTTCTTTATTCATGCTTTATGTGTCGTGTCATGTTAATTCATGATGCTTAAAACATTTAT CTGAAGAGCAAAATTACAATTTGAATTGCTTTGCTTGCTATATGGTAGTGAATGTTGTTTGTGAAGTTGGTAAGATTAGA TTGAAAATTGATGATGTATATTGATCTGTCATAACTCATTGACTTGTTGATGTATATTTGAACTTTCTGAATATTCTACT GGTTCAAATGTGTGGCAAATTTTCTATATGAATACATTTTTGCACAAGTTTAGGAATTTATTTGTGTATCACTTACTAAG GATGATGTTAGTGATTAACTAGCTTGTGTATATTGTGACCATATCTCCTGCTTTGCTTCAGTGCTCAAAAGAACCCTTCA AATGGAGAGGCAGCCAACCCAGGGAGAGAAGCTTTCGGCCATAAAAGCAAACTGTCAAATTGAGCTTTCTCTAGATGAAT GTGTGATGATTCTCAGTCATAAGAGAGAATTCCACAGGCTCCCTTGAAGACCTTATAGATATTGCTTCTAAGTATGAAGA TGATGAATCCACAGTTCCTCGATGAAACACCAGATTCTAATTCCATGCACCACCATTCAGGCACAGATGATAGTTTAAAA GATAAATTATTTACCATGTTCCTTTTAATATTTTGGTTGTATTGATTTCACCATTTGGTTCCTCACTGAATGTGATTAGT GGATGTTTGGAAATACAATATATTTTTCACATTGGGGTGAGATTGTGAGAACTTAATAGTTGACTGACTCTAACATAAAT CTGTCTCTGATCTCTCTGCTCATGCTGTCTCTTTTGGGAAAAT 

CDS sequence (LotjaGi1g1v0057400.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGAGGCTTTACTTGGAGCTGTGTTTGAGAAATTGCTCTCCCTAGCTCAGAATGAATTTGCAACCATGTCTGGAAT CCAGGGAAAGGCTAAGAAGCTATCAAACACTCTTGAACTGATCAAGGCTGTTGTTGAAGATGCTGAGGAGAAACAGATAA CAAACAAACCTATAAAGGTTTGGCTGCAGCAGCTCAAAGATGCTGTGTACATCCTAGATGATATCCTTGATGAATGTTCC ATAGAATCACTTCGACTTAAAGGATTGTCCTCTTTAAAACCGAAGAGCATCAAATTTCGCTATGAGATTGGCAACAAGCT GAAAGAGATTTCTAGGAGATTTGATGAGATTGCTGACCAGAAGAACAAGTATGTTCTGCAAGAGGTTGTCAGGGAAAGGT CAACTGATGTAGCTGAATGGCGCCAAACCAGCTCGATAATTCCCCAAGCTAAACTATATGGAAGAGAAGATGATAAGGAG AAGATTGTGAAGTTTCTTCTCAGCCAAGCACGCGAGTCTGACTTCCTCTCCATCTATCCTATTGTCGGCTTAGGAGGCAT GGGAAAAACAACACTTGCTCAAATGGTCTACAATGATGATCAGGTAACAAGCAATTTCAACATCAAAGTTTGGATTTGTG TTTCTGAAAATTTCTCTGTCCAGAGGATTTTGTGCTCCATCATAGAATCTATTACAAAAGCAAAACATGATTGCTTGAAT TTAGATGTAACAGAAAGAAAGGTGCAAGAATTGTTGCAAGGTAAAAGATATTTTCTAGTTTTGGATGACGTGTGGAGGAA AAATGAAGAAATGAAATTTGGTTTAACCCAAGACAAATGGAATAAGCTGAAATGTGTGTTGTCATGTGCATCCAAAGGAG CTTCTATTTTAGTATCCACTCGTGATATGAAGGTTGCAGCAATTATGGGAACGTGCCAAGCTCATCATTTGTGCGGTCTC TCAGAGGATGAATGTTGGATGCTCTTCAAACAATATGCATTTGGAACTGAAAAAGAAGAGCGTGCAGAGCTGGTACCTAT TGGAAAAGAGATAGTAAAGACGTGCGGAGGATCACCTCTTGCAGCACAAGCACTAGGAGGTCTCTTGTTCTCAAGGTCTG AGGAAAAGGAATGGCTTGAAGTTATGGAAAGTGGGCTTTGGAATTTAGAAGGTGAAAATTCTATTTTGGCTGCCTTGAGA TTGAGCTACTTTCATTTAACGCCAACATTAAGGCAGTGTTTTGCATTTTGTGCCATATTTCCCAAAGATACAGAAATCAT GAAGGAAGATTTGATACATCTTTGGATGGCTAATGGGTTTATTTCATCTAGGGCAAACTTGGAGGTTGAAGATGTTGGCA ATATGATTTGGAATGAATTGTATCAAAAATCATTCTTTCAAGATATGAAGTTGGTTGATTATTCAGATGTTATTCATTTC AAGATGCATGATCTTGTCCATGATCTTGCTCTTTCAATAATGGGGCAAGAGTGCATGGTTTTGGGAAACACAAACATGAC AGATTTGTCAACAAGCACCCACCATGTTAGCTTTGACTCTGGTATGGATGTATTGTCACTCCACAAAAGTGCCTTGAAGA AAGTTGAATCCTTGAGAACATTTTACCAGTTAAAAGTCTCCAACAACGTTTCTGGTTGCATCCCAATACACTGCAGCACT CTTCGGGTATTACGCACAAGTTCTTTTAATTTATCACCACTCAAGAATTTAATTCATTTGAGGTATTTGGAACTTTTCAA GCTTGAGATAGAAACCTTGCCCGACTCAATTTATAGCTTGCGGAAATTGGAAATCTTGAAATTGAGATCTTTGAAAAAAC TTGTTTGTCTACCTAAAGACTTGACTTGCTTACAGGATCTTAGACATCTTGTCATTGAAGATTGTTATTCATTGTCTTGT ATGTTCCCTAACATTGGGAAATTATCCCGTCTGAGAACGTTAAGTAAGTACATTGTCAGTTCAGAGATTGGGCATAGCCT GGCAGAATTACATGACTTAAAACTCAGAGGAAATTTGCACATTAAAGGACTAGAAAATGTTGGCAGTTTATCCGAAGCTC AAGAGGCCAACTTGATGGGTAAAAAAGACATCCACAAATTACAGTTGATATGGGACAAGGAGGTCCACTCAAAGCCATAT GCTACTAATCCGAAGCTAGTACTTAATGCTCTTCAACCTCACTCAAATCTCAAGAATTTGAAAATAGAATACTCTGCAGG ATTACAATTACCGACCTGGATGGAAATGCTCACCAATTTAGTTTCTCTAAAGCTTTATGGATGCGAGATGTGTGTGCGGC TTCCCTCACTTGGTAAACTACCATATCTAAGAAGAATTAAAATAAGTGAAATGAATGATGTGCAGTATATGGATGATGAC GAATCTGATGATGGTGTGGAGGTGAAAGCTTTCCCGTCATTAGAAAAACTCTCACTATCAGGATGCTCAAAGTTAGAGCG GTTGTTGAAAGTGGAAAGAGGAGAGAATTTCCCCTGTCTTTCTGATTTGGCAATTCGTAATTGCCCTAAACTTGAGTTGC CAAGCTGCTGCATTCCGTCACTCAAAAAGCTCCATCTAGAGGATTATACTGATGATTTACTGAGGTCCCTCTCATGTTTC AATGGCCTTACCTCCCTTCGGCTTTACGCTGGCGATGTAGACCTGACATCCTTCCCGGTGGGAACATTGACTTGTCTTCA GACTCTGTGGATACGTGGTTCCAAGGTATTGAAGGAATTACCAAATGAAATCTTCAAAAACCTCAACAATTTGGAGTATC TGAGCATCGGGTGGAGCAGCGAGCTGGAGTCTTTACCAGAGCAAGGGTGGGAAGGTCTCCGCTCCCTTCGAACTCTGGGG TTTTGGGATTGTGGTGAATTGAAATCCTTGCCGGATGGTGTTCGACACCTCACTTCACTCCAGCTTTTGAACATCTATTA TTGTAGGAAGCTGGAGTCTTTACCAGAGCAAGGGTGGGAAGGTCTCCGCTCCCTTCGAACTCTGGGGTTTTGGTATTGTG GTGAATTGAAATCCTTGCCGGATGGTGTTCGACACCTCACTTCACTCCAGCTTTTGAACATCCGTTATTGTAGGAAGCTG GAGTCTTTACCAGAGCAAGGGTGGGAAGGTCTCCGCTCCCTTCGAACTCTGCAGATTTCAGGATGTGGTGAATTGAAATC CTTGCCGGATGGTGTTCGACACCTCACTTCACTCCAGCTTTTGAGTATTGCGCACTGCCCAGCATTAGCCGAGAGGTGTA AAGAGGGAACAGGGGAGGATTGGGACAAGATAGCACACGTTTCCAAAGTACAAATTATTAATTCTGAATTCGGCTTGTAA 

Protein sequence (LotjaGi1g1v0057400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAEALLGAVFEKLLSLAQNEFATMSGIQGKAKKLSNTLELIKAVVEDAEEKQITNKPIKVWLQQLKDAVYILDDILDECS IESLRLKGLSSLKPKSIKFRYEIGNKLKEISRRFDEIADQKNKYVLQEVVRERSTDVAEWRQTSSIIPQAKLYGREDDKE KIVKFLLSQARESDFLSIYPIVGLGGMGKTTLAQMVYNDDQVTSNFNIKVWICVSENFSVQRILCSIIESITKAKHDCLN LDVTERKVQELLQGKRYFLVLDDVWRKNEEMKFGLTQDKWNKLKCVLSCASKGASILVSTRDMKVAAIMGTCQAHHLCGL SEDECWMLFKQYAFGTEKEERAELVPIGKEIVKTCGGSPLAAQALGGLLFSRSEEKEWLEVMESGLWNLEGENSILAALR LSYFHLTPTLRQCFAFCAIFPKDTEIMKEDLIHLWMANGFISSRANLEVEDVGNMIWNELYQKSFFQDMKLVDYSDVIHF KMHDLVHDLALSIMGQECMVLGNTNMTDLSTSTHHVSFDSGMDVLSLHKSALKKVESLRTFYQLKVSNNVSGCIPIHCST LRVLRTSSFNLSPLKNLIHLRYLELFKLEIETLPDSIYSLRKLEILKLRSLKKLVCLPKDLTCLQDLRHLVIEDCYSLSC MFPNIGKLSRLRTLSKYIVSSEIGHSLAELHDLKLRGNLHIKGLENVGSLSEAQEANLMGKKDIHKLQLIWDKEVHSKPY ATNPKLVLNALQPHSNLKNLKIEYSAGLQLPTWMEMLTNLVSLKLYGCEMCVRLPSLGKLPYLRRIKISEMNDVQYMDDD ESDDGVEVKAFPSLEKLSLSGCSKLERLLKVERGENFPCLSDLAIRNCPKLELPSCCIPSLKKLHLEDYTDDLLRSLSCF NGLTSLRLYAGDVDLTSFPVGTLTCLQTLWIRGSKVLKELPNEIFKNLNNLEYLSIGWSSELESLPEQGWEGLRSLRTLG FWDCGELKSLPDGVRHLTSLQLLNIYYCRKLESLPEQGWEGLRSLRTLGFWYCGELKSLPDGVRHLTSLQLLNIRYCRKL ESLPEQGWEGLRSLRTLQISGCGELKSLPDGVRHLTSLQLLSIAHCPALAERCKEGTGEDWDKIAHVSKVQIINSEFGL 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
CDD 2 119 118 2.21202E-15
Pfam 6 101 96 1.5E-24
PANTHER 24 805 782 6.5E-182
PANTHER 24 805 782 6.5E-182
Coils 31 51 21 -
Gene3D 135 314 180 4.7E-35
SUPERFAMILY 139 417 279 5.48E-65
Pfam 155 383 229 3.0E-51
PRINTS 178 193 16 1.4E-17
PRINTS 251 265 15 1.4E-17
PRINTS 355 369 15 1.4E-17
SUPERFAMILY 481 864 384 1.36E-27
Gene3D 499 659 161 7.8E-9
Gene3D 660 865 206 7.7E-23
PRINTS 809 825 17 1.4E-17
Gene3D 870 997 128 1.1E-16
SUPERFAMILY 876 1089 214 2.47E-35
PANTHER 954 1030 77 6.5E-182
PANTHER 954 1030 77 6.5E-182
Gene3D 998 1097 100 5.0E-22

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function ADP binding Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0057400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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