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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0058400 |
| Transcript ID | LotjaGi1g1v0058400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | KRR1 small subunit processome component; TAIR: AT5G08420.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|O74777|KRR1_SCHPO KRR1 small subunit processome component homolog; TrEMBL-Plants: tr|I1JIP3|I1JIP3_SOYBN KRR1 small subunit processome component; Found in the gene: LotjaGi1g1v0058400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:8151283..8155580) extracted from Lotus japonicus Gifu genome v1.2.
TGTTAACCCCCCACCCCAAAAAAAAACTATAAACCCTAATCCAATTCCCAAATTCTTCACCGACAAGCATCCATCATTGG AGGCGGAAACTCTGGTTCTCTTCCCCTCACCGGAGCCACCGTCATCCCTCACCGGAGCCACGTCCGTCCACCATTCTTCA CCGGAGCTACAATTCTCCATTTCTCTTCCCGACTCATCACTCACCACCATCTCAGCCATGGCTGAAGAAGACTACAACAA CGGCGCAACCAACGAAGCACCGAAGGAGAACACCAAGCGGAAGGGGAAGCACGACAAGCCGAAGCCATGGGACGACGACC CCAACATCGACCGGTGGAAGGTCGAGAAGTTCGATCCTTCATGGAACGAAGGCGGCATGGTCGAAGTGAGTTCCTTCTCC ACACTCTTCCCTCAGTATCGCGAGAAGTATCTTCAAGAAGCATGGCCTCTCGTGAAATCTTCTCTCAAAGAATTCGGCGT CTCCTGCGAACTCAATTTGGTATATGCAACCCCATTAACACTAACCCTAAATTCACACAGTGCTTGATTTCAATTCAATT GCATTCAATTGCTTACTACTTCACATTGTGCACAGGTTGAGGGTTCGATGACGGTTTCGACTACCAGAAAGACTAGGGAT CCTTATATCATTGTCAAAGCTAGGGATCTTATTAAGCTTCTTTCGCGAAGCGTTCCTGCTCCTCAGGTTAATAATCATCA TTATCTTCAGCTGTTGATTTAATATAATTCATTGTGTGTTTATTTATTCATATGGTTTACTTGAGGAATGCGAAGTTTAG TTGCAATGTTGGCTTATTTTGGTGTTGTTGTGTTGCTCTGTTGACTGCTTTCAGGCTATAAAGATACTTGATGATGAAGT GCAATGTGACATTATTAAAATTAGCGGGATGGTTCGCAATAAGGTAACCTACATTGGCTGCCTCTGTTTTTCTATTTGAG TGTTTTCTTATGTTTTTTGTTTATTAGTTTATCTTAGAATGTTGATGGCTTTGTCAAACCCTTATTTGGATTGGGTGTTA GTTTTCTGGATTGGAAAGATTTAGCTTCTTAATTGATTGCACATTCATGAAATGATCCTCCTCTTTTATAGACAATCTTC GATCCCTGTTTGTTTGTATGGATGATTCTCAAAACCTATGACTACAAGGTCCAACTGTGATAGTTTCTTTGAAAAAGAGG ATCTCGAATGTTATTTTTAAAACTTTGAAATGATAACCATAGTTATTGATAAAGGGTAGCAGCAAGAGTGATCAACTCCA CTCATGGAATGTTAGCGGATGGCCGGAAGGCCGTTATCCCTCTAAAAATTATAGGTAGAAGTAGAAGAGAAGTAATTTAT ATTATACACATCGAGATGGTCCTTAAAAAAGTATGACCCAAGATCACCAACATATTCATAATTTACTAATCCAAGTTCAT GCTCTCAAGTCTGAACACATGACATCAACTCGAGGCTAAATTAGCAGAACAATAACCACAAAAGTCAAAGAGCACAAGGG GTGAAAGTAGAGCACCAAATCTGAGATAATGATTGGAATTAATAGAAATAAAAAACCTTGAAGAGCTGTGAACTGTAAAT AACTTTTACACAACACAGAAAAAAACAGACACCTGCAACTGCTAAAAGACAGAGGGTGTTATCCATAAAGAGCGTGAACA AGACCTGCATGAAAAAGTTAACATAAACATGTCTGAAGGGCATGATGGATGTATTTTGTTGAGCATTCCAGAGGTGTGCT GGTAATAATCGGGTTTGTGTGTTTTCTGTGAATAATTGATGGATTCTTACCCCTCTTTACATTAGCCGCTGTTTTTCTCC ATGATCAATGTAATAACACTACAGTTGCCTCATTTGCATGCAACTGATACCCGAAAGATAAGGCTAGGAATTATAAGACA CCAGTAACCAGACTTGTGGAGCAATAATCATTAACTTTTGACCTGCCCTTCATAGGAACCAAAATTATACAAGTATTATT CATAGAGACTATATACTCTTGCCATTGCAATATAATTCACTAAACACTTTCAGGAGACCTTTATTGTTAAAAATCCTAAT GAAAGGAAGAAAACATCAGGCACTGAAATTTCTCCTTATCCATGCTCCAATAAGCGCATTGAATTTCGTATTTTGCATTT ATGCTCATAATTATTGTATATACTATATAAATTAATATTTTGCAAAGCTTAAGCATTTCACAGAGGTCAGTCTGATGGTA GGAAGCTTTTGATTATTTTCTAACTGCAGGAGCGATTTGTGAAAAGAAGGCAACACCTTGTGGGTCCCAATTCTTCCACA TTGAAGGTATCTTTTGTGAAAGTCTTCTTTGTTACTACTCCTGATTTAGTCTGCACAGTGCATACCGCTGATGCTGACTT CAGCTTTGTAACTCACCTTTCTCCAACTATTGTACCCTGGCGCAGGCTCTCGAAATACTCACTGGCTGCTACATTCTCGT CCAGGTAATTTTAATTGTTGCTTTAGAATTCAGATTTTAAAGGTGGGACATTTACTTGCACTCAAAATTTGTGTTGGATG CTGAATTGAGCTTACTTTCAAATTTTACTTGAAATTCCACAGGGAAACACTGTTTCTGCTATGGGTTCATTCAAAGGTTT GAAACAAGTCAGAAGGATTGTTGAAGAATGCATGCTGAATAAACTGCATCCTGTTTACAGCATTAAGGTTAATAAAATTG TATTTCTCCATCTTATTTTGTAGTATAGATTTTAGGTGTGGAAAATATCTCAGCCCTTTTGTCATTCTCAGATTCTTATG ATGAAGAAGGAACTTGAAAAGGATCCAGCTCTTGCCCAAGAGAACTGGGATAGATTTCTTCCGAAGTTCAAGAAGTATGC TTTTTAATTTGATAATTTGTATATACAAAGTACAAATCCTCTACTTCAGTTTTATTGATGGTTCATCTTTTTCTAGGAAA AATGTTAAGCAAAAGAAGGTTAAAGCTAAAGAGAAGAAACCATACACTCCTTTCCCTCCACCTCAACCGCTCAGTAAGGT GAGACAAGCGCTAATATCCCCTCTCAAGTTGGAGTTCTTTCATCATTTAATATAGAGAGACCGTCCCCTACAAAAATAAA TAAATAAATAAATGATAAGACAAAAGTGAGTTTGGTTCATCAAAAAAGAAGAGAAGTTTAATTTTTTGTTGTTGTTGGAA AATTGACTTAATGATTCTTAAAGAAGAGTTATACTTCAGTTGCTCTCAAGTACTCGATTGATTGCCCTGTTTTCACTTCT GCCTTCTAGCAGGATCCTGCTGAATGATATTGTTTTGTTGATTTGTGAATTAAATTAAGGAATCCTTGGTAATTTTTGTG ATATTTCAGGAAGATGAGCAATTGTTAACTGGAGAATACTTTATGAGTGACAAAAGGAAATCAGCGAAGAAATGGCAAGA GAGGCAGGAGAAGCAGGCAGAAAAAACTGCTGAAAACAAAAGAAAAAGAGACGAGGCCTTTATCCCACCCAAGGTATATG TCAATATTTCTTTTGCGGTTTTCACTGCTTTTTAACAATTTCTGTCATGCATATTGGCCTATAATTTCATTTATGGTATT TTGTAAAACTTATATGTACACTCTTCAGGAACCTGCAAAACCGCTGGATAAATCTGAGGATGCTAATGATAATGTAGCTG ACATGGCAATGTCCTTAAAGGTAACAGTTTCTAGCGTGTTTTTCATTTTGCCAAAATAACACTTTGTTTTTCTTGTTTGG CCTGCTAAAGTTGTTATAAGCTTTCTTTGGCAAACTAGTAGTTTCTTTTCAATGAATCATCATCTCACTTGAATCCAAAA TGGTTTCATCCCACAGAAAAAAGCGAAGAAGTTTGGGGAGCGCAAATCGGGAGAAAATGTAGATGCTGAGGCTTACATTA TGGGATCATCTGAACAAGCATCAGGAAAGAAATCCAAGAAGCAAAGGTCTTAAGCATGATCTTGATTTTGGAGATGGAAT ATGAGCATTTCATGTGAATCCTATCCAGAAATTATGTATTCTAAACACTAATGCAAGGAGGCATTTTGTATCTCTCTTGA ACGTTTCAATTAGACTAAATGTACAATTTTGCTGAAAACTTTCTCCAATATAGTTTGGCTGCATGAGTTATTATCGTTGA TAGTTCGACATGACCTTTATTTTTATTCCGTTTTATGAATCGTATTAATTGCTTGGAATTTTCAAAAAAAAAAAATTAGA GTTTAGTGTTTTTATAAAGAGTAAAGTACACTCACCCCCCTTAAGGTTTGTTAGAATT
CDS sequence (LotjaGi1g1v0058400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAAGAAGACTACAACAACGGCGCAACCAACGAAGCACCGAAGGAGAACACCAAGCGGAAGGGGAAGCACGACAA GCCGAAGCCATGGGACGACGACCCCAACATCGACCGGTGGAAGGTCGAGAAGTTCGATCCTTCATGGAACGAAGGCGGCA TGGTCGAAGTGAGTTCCTTCTCCACACTCTTCCCTCAGTATCGCGAGAAGTATCTTCAAGAAGCATGGCCTCTCGTGAAA TCTTCTCTCAAAGAATTCGGCGTCTCCTGCGAACTCAATTTGGTTGAGGGTTCGATGACGGTTTCGACTACCAGAAAGAC TAGGGATCCTTATATCATTGTCAAAGCTAGGGATCTTATTAAGCTTCTTTCGCGAAGCGTTCCTGCTCCTCAGGCTATAA AGATACTTGATGATGAAGTGCAATGTGACATTATTAAAATTAGCGGGATGGTTCGCAATAAGGAGCGATTTGTGAAAAGA AGGCAACACCTTGTGGGTCCCAATTCTTCCACATTGAAGGCTCTCGAAATACTCACTGGCTGCTACATTCTCGTCCAGGG AAACACTGTTTCTGCTATGGGTTCATTCAAAGGTTTGAAACAAGTCAGAAGGATTGTTGAAGAATGCATGCTGAATAAAC TGCATCCTGTTTACAGCATTAAGATTCTTATGATGAAGAAGGAACTTGAAAAGGATCCAGCTCTTGCCCAAGAGAACTGG GATAGATTTCTTCCGAAGTTCAAGAAGAAAAATGTTAAGCAAAAGAAGGTTAAAGCTAAAGAGAAGAAACCATACACTCC TTTCCCTCCACCTCAACCGCTCAGTAAGGAAGATGAGCAATTGTTAACTGGAGAATACTTTATGAGTGACAAAAGGAAAT CAGCGAAGAAATGGCAAGAGAGGCAGGAGAAGCAGGCAGAAAAAACTGCTGAAAACAAAAGAAAAAGAGACGAGGCCTTT ATCCCACCCAAGGAACCTGCAAAACCGCTGGATAAATCTGAGGATGCTAATGATAATGTAGCTGACATGGCAATGTCCTT AAAGAAAAAAGCGAAGAAGTTTGGGGAGCGCAAATCGGGAGAAAATGTAGATGCTGAGGCTTACATTATGGGATCATCTG AACAAGCATCAGGAAAGAAATCCAAGAAGCAAAGGTCTTAA
Protein sequence (LotjaGi1g1v0058400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEEDYNNGATNEAPKENTKRKGKHDKPKPWDDDPNIDRWKVEKFDPSWNEGGMVEVSSFSTLFPQYREKYLQEAWPLVK SSLKEFGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILDDEVQCDIIKISGMVRNKERFVKR RQHLVGPNSSTLKALEILTGCYILVQGNTVSAMGSFKGLKQVRRIVEECMLNKLHPVYSIKILMMKKELEKDPALAQENW DRFLPKFKKKNVKQKKVKAKEKKPYTPFPPPQPLSKEDEQLLTGEYFMSDKRKSAKKWQERQEKQAEKTAENKRKRDEAF IPPKEPAKPLDKSEDANDNVADMAMSLKKKAKKFGERKSGENVDAEAYIMGSSEQASGKKSKKQRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | - | – | |
| PIRSF | 5 | 369 | 365 | 1.2E-151 | ||
| PANTHER | 10 | 374 | 365 | 2.7E-179 | ||
| MobiDBLite | 15 | 37 | 23 | - | – | |
| Gene3D | 52 | 138 | 87 | 3.8E-45 | ||
| Pfam | 58 | 138 | 81 | 1.0E-31 | ||
| SUPERFAMILY | 139 | 243 | 105 | 6.43E-16 | ||
| Gene3D | 139 | 242 | 104 | 3.8E-47 | ||
| MobiDBLite | 253 | 279 | 27 | - | – | |
| MobiDBLite | 292 | 386 | 95 | - | – | |
| MobiDBLite | 292 | 338 | 47 | - | – | |
| MobiDBLite | 345 | 363 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi1g1v0058400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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