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LotjaGi1g1v0058600.1

Overview

Field Value
Gene ID LotjaGi1g1v0058600
Transcript ID LotjaGi1g1v0058600.1
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description RING/U-box superfamily protein, putative; TAIR: AT3G58720.2 RING/U-box superfamily protein; Swiss-Prot: sp|Q940T5|RDUF2_ARATH E3 ubiquitin-protein ligase RDUF2; TrEMBL-Plants: tr|A0A151TL14|A0A151TL14_CAJCA E3 ubiquitin-protein ligase RNF133 family; Found in the gene: LotjaGi1g1v0058600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:8203653..8208882) extracted from Lotus japonicus Gifu genome v1.2.

GGGCTGGGCCGTTGGATGCTAACCAGGCCTCACTGAAAATAAAGAGTGTATTGCAATCAAAACTAAGGGTTTGCTCCTTC GCTATTACACACTCACTTCTCTTTACCCTGGCCGTGAACCCTACCACCCACCTCCTGATCCAATGGTATGTGCCTCTTCC CTTTCTCCTCCTTCTTCTTCTTCCTTCATCGCTTCACAGATTCGAATCCTCTTTTCACATTTTGATTCTCATGTTTTTCG TTTTGTTCTGAATTGAAATGAACTGAAAACCAGGCTTCCGAAAAGAAACTGGCGAACCCTATGAGGGAGATCAAGGTCCA GAAGCTCGTCCTCAACATCTCCGTCGGTGAGAGTGGAGATCGTCTCACCAGAGCAGCCAAGGTTTTTCATCACTCTTATT AGTTTTTTCTTCGTTATTTATTTTCAATTTTAAAATTGTTTTTTTTTTCTTTCTTTCTATGTTGCAGGTGCTGGAGCAAC TTAGTGGTCAAACCCCAGTGTTTTCTAAGGGTAAGAGTTCTAAACAAATTTCAAAATGGGTGGTTTATTTGTGCTAGTAG TGGATATGAGTCTCTAAAATCTGTTAATTTAAAGGGATTTATTTTTAATGAAATTAGTGTGTCAATTTTATTTTGGGTTT TATTGATATTTACCTATAGTGCTTGTGAAGTTAATTTGAAAGAGATAAACTCTAGGGTTCGGGTTTCGGTCTATTTTAGG TTTGAAATGGGAGCTTCATTGTTTTTATTGATTGCAATGTGAAGAGCCTGATTGTTGGGTGATATAGTGGTAGTTTAATA GTTTGTAGCTTTTGGGAATTACAGTCATGTGTGAACCTTTTATGTGTAACTAAATTCACGTTAGGGAATTCATAGGACTT AGGAATGGGGAATATGAGCATTAAGATGTCAATTATTGTGCAGAAAGTGTATCCCTTCCCTCGAACTATACCTTTGTTTT GTTTGTTCTGAATTAAACCTTGTTTTTGATGTTATAGTTTTGTCTGGTATCTGTGGTTGTCTTATCTTTGACTTTCTTAA GTATATTCTCTTCTGTTCTGGCAGCCAGATACACTGTTCGATCCTTTGGAATCAGAAGAAATGAAAAGATTGCATGCTAT GTTACTGTTAGAGGTGACAAGGCAATGCAACTTTTGGAGAGTGGATTGAAGGTTAAGGAATATGAACTTCTTAGAAAGAA CTTTAGTGATACTGGGTGCTTTGGCTTTGGTATTCAGGAGCACATTGATTTGGGAATCAAGTAAGCTGAAGCACAGTTCT TTGATTTCATGCTATTGTTTTTTAACTTTTGTCAGAGAAAAACCTATTTAGATAGTTCTTGTGAGTCTACATAGTACAAA CTATACTTATTCATGATTTTGAATCTATCATAATATTTGTTTCTTCACTGTTGAACTTGACTTAAGTGTGTTTGGCAGAA CTTATTCAAGTTTAGCTTATGAAAATACCACATGACTAACTAAAACCTCTCTTTTAAGCTTATTTTGATAAGATTTGTTG ATGGGTTTCTGAATAAATGCTTACTTATAGCTTCTTTTGTGCTTATCGTATTAAGTTTTCTGATTCTGATTATCATAAGT GCTTAAATGAGTTGTATACCCTAACCCAACCTCAAACCATATACAATTTTCTCTATTGCTGTTTCGGTTCTTTATAAAAA AGCTGTTTTATGATTCCTGTTTTATGTCAAGTGACTAGTTTCATTCCCCTCTTGTAGATTTTGAGGTTATGTTGTCAATT TCTTTTATAATCCAGATTTAAAACTATTTACACATTATTTGTCCCTGGCCCATTTCAGGTATGATCCATCCACTGGAATT TACGGTATGGATTTCTATGTTGTTCTGGAGCGCCCTGGTTACCGTGTGGGACGTCGCCGTAGGTGCAAGTCCCGTGTTGG GATTCAACACCGTGTCACAAAGGATGATGCTATGAAGTGGTTCCAGGTGAAATATGAGGGAGTGATCCTCAACAAGGCTC AGGCAGTGTTTTAATTCAACCAAGTCCACTTTAGGAGAGTATCTTATGTTTCCCAACTATAGTTTGATCTTTTTCAGATA GTATGCTAAGTTTCAGACAGAATTTTTTGGCATCCCTCAGGTGTCCTTGTAGGGGCATCAGGCAAATTTTCAATGAATAC TTTTGTTTGTCATTTTTGTTGTTTTATGATGAAAGCTCATGGATTTACTATTGTGCTGTTAAATGTTACTTGTGCTAAGT CCTGTAATGCATTGCAACAGTTTACAATGGTTTTTTTGCAACCAAATGTTACTTGTTTTTCTATGCAAAACAGACCTCGA CATTATCTGTCAACCCACTTATTAGGTAGACTGGGTTTTGCTAAATATTTAAGCTCCCTCTTGGAATTTTTATACACTGA AACAAGTTTGTTTCTGTTGGAACTGGCCGAACCTATGTCTTTGCCTCATCCCTCATTTGGTGAAGAGTGAACCCTAATCT CCATATACCACAGTTGCTACCCACTGTACACCTCTGCCAATGCTATGTCATGATGCTCATTATTGTCCAAACTCTGTCCA TCATGCTATTGAACGCCCAGAATGCATGCACAATGCAAGTTGCCTCTGCTCATAGCTTAACACTATCCATGCTGCTCACT TGAATCTTACATGTCACGTGTTCCACCCCCTTATTTTGAACCTATCATGATAACCTGGATTATCATGACTTTCTTTCCAA TCCTTAAAAACATTAGGTTAGCTCAAATTGTAAGAGTTAGGGGACATAAGGGTGGGTGAGATGAATGGTGAAGGGTCCCG AGTTCGAACCCTGAGGAGAAACTAATTTACTAACATTATTAACCACTAACATTTTCCTATAAAAAAAGTTAGGGTAGAAA TGAAACATATCAGGAACATTAAATTAATAAAGCATCCATCAACACTTTAAGAACAAGATTCTTACTCTTATTTCTCTGCC TTCATTGCGGTGCTGCAGCCACCATACTAGAGCATCTTCAAAATGGAGTGAGAATCAGAATAGAAAATAATGGAACTCAA AAGTAAAGGGTAGAAGTGACAACATCACAGAGAATATATTCTCGCTGACATCTAAATAAACAGAGCCATGGATTCCCAAA GTGGACAAATGAAGCAATATTTACACCCCAAGTAATAAAAGAATATTTGTATGATCAATTGAGGAGGAAGGGGAACCCAA GTGCTGAAACATGAGCAATTTCACACCTTTGCCAGGGCGTTGGAGGAGAGGTGTTAGAGCCTATGATGCTCACACAACCA ACACCAGTGAATCCAACGAAGTGCTTGTGTATTATAGATCTCACTCTACAAGGGTCAACGTAAGTATGTGCAGGTTTTGA TTTAATACCATCATTTTTAAGAGATGGCAGAGAAAGAAATCAGATTAAATTCATGTATTTAGAAGCAGAGAGTTGAACTA TAGCATGTTCGGATCAACTTTTTATTGTTTTTAGAGTTAATTCTGAAAATCATACATAAGCTACTAACATAAGCTTCTTC TCAGTATTAATTATGGTTTTAGAATCAATTGTAAAATGATTTCCAACCATCCACTTATCAAGTGTGTGAGGTTAACTACT AGTATGTAATTTTGGTTCATTTCAGCAGGATGAGAGGAGTTCAGGTGTACTAGATCCACTGCAGTGGTGGGAAGTCAGAA CTCCTACAAGACACTACACTTTACCAAAGTAAGACCAAATTGCAAACTAATTTGCTTGAATTGAGACTTCCCTAATAGCA TTAGTGTATTACATACATAGAAAAGAAAAGTAATCCCTACAAAGTCAGGATTTCAATTTTTTTTTGTTACTGAATAGCCA ATCAAAGTACTATTCTCTAGAATTGAAAAGGAAGATCACAAGAGACAAGTTTATAGTTGTATTAAAATTCTTAGTACTTG CATGTAAGACAATGCACAATTTGATTTGAATTTTACATTAAATCACCTCAATTGATGTATTATTTTTCTTCTGGTGCTGT AGGACTAGCTAGTGGAACATGCTATTTATATTTTACAGCATGTTTGGAAATCCTTATTCTAAAGCCAAAAATCAGTTCTG AGAAAAAACTTCTGTGAGTAGCTACTAGTTTCTCAGTGCTAGAATTGATTCTGAGAAAAAATAAGTTGATCCAAACATGT TGTAAGTTGCATGAACTTGTGATTTTTAGGAGAGGGAATCCTGATTGATTTACCCATTTTTAAGCAATTTTCAGTTTTCC AGCACAGCAACACAGCCACAGCAGGCAACAAACCAATGTTCCCAATGGGGACATGGGAAGAGGCTTCAACCCTAGGCTAA GACAGATTATCCAGCAGCCACATTCAAGATCCACACTCCAAACAAGCATACAAGCTCCCCAAGTGGAAGAAAACAGCAAA CCAACAGCTTTGAGCAAGCTTAAGAAAGTGATTTACAATAACAACACTACCCCAAAGAGTTTAGCTAGGAGAGTGAGCTT ATACTATAGAGATAATTCCAATGCTTTGAAAGAGAGGGTGAAAGAAAATGATGAAGATGGCAAGAGGTGTGCTGTTTGCT TGGAAGATTTTGAACCCAAAGAAGAGGTGATGCTCACTCCATGCAACCACATGTTTCATGAGGACTGCATAATGCCTTGG TTAACAAGTAAAGGCCAGTGCCCAGTCTGTAGGTTTGTGATTTGGGAGAGGGTGAACAACAACACTTCATCATCTTTCAA CAGGAATAATGATATTGTTGCCAATTTGGAACCTGGTGACCTGATTGGTGGAGAGCTTTTGTCAATTCTGAGGGCCATGG AAGTGGCTTTTCACTTGGGGAGCATAAATTACACATAAGAGTTTTACTAAAATTAGTCTGCATCGCATCATTAGTAAGAA TTTGCTTAAAGTTGGGGTGAAGGTTTGATTTAAAAGTTTTTATCATGTAATGTAAATCTTGATAGGCGGGGCTTATGAGT TATGCAAGCGACATTGGCAAAATGATCAGAGTAAAAATCATGTAATAACCAATATTAAGTGTAGTAACTTAATATTTTGT CCATCCTTATAATTTTGGAGATCCCAAATGTAGTTCAACCAGTAAAAAGAAAGAGAAGTATTAAAAATTGTTAAAGTGAA TGTTGAAAACATTTCTCAAATAACTATACCATGTTATCATAAAAAAATTACTTAATATCAAGAAGTTTTTCACCTCTTTT GTTTACACCTCTTTTTCTTTTAAAGTACCT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0058600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGCAATTTCACACCTTTGCCAGGGCGTTGGAGGAGAGGTGTTAGAGCCTATGATGCTCACACAACCAACACCAGTGA ATCCAACGAAGTGCTTGTGTATTATAGATCTCACTCTACAAGGGTCAACGATGAGAGGAGTTCAGGTGTACTAGATCCAC TGCAGTGGTGGGAAGTCAGAACTCCTACAAGACACTACACTTTACCAAATTTTCCAGCACAGCAACACAGCCACAGCAGG CAACAAACCAATGTTCCCAATGGGGACATGGGAAGAGGCTTCAACCCTAGGCTAAGACAGATTATCCAGCAGCCACATTC AAGATCCACACTCCAAACAAGCATACAAGCTCCCCAAGTGGAAGAAAACAGCAAACCAACAGCTTTGAGCAAGCTTAAGA AAGTGATTTACAATAACAACACTACCCCAAAGAGTTTAGCTAGGAGAGTGAGCTTATACTATAGAGATAATTCCAATGCT TTGAAAGAGAGGGTGAAAGAAAATGATGAAGATGGCAAGAGGTGTGCTGTTTGCTTGGAAGATTTTGAACCCAAAGAAGA GGTGATGCTCACTCCATGCAACCACATGTTTCATGAGGACTGCATAATGCCTTGGTTAACAAGTAAAGGCCAGTGCCCAG TCTGTAGGTTTGTGATTTGGGAGAGGGTGAACAACAACACTTCATCATCTTTCAACAGGAATAATGATATTGTTGCCAAT TTGGAACCTGGTGACCTGATTGGTGGAGAGCTTTTGTCAATTCTGAGGGCCATGGAAGTGGCTTTTCACTTGGGGAGCAT AAATTACACATAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0058600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSNFTPLPGRWRRGVRAYDAHTTNTSESNEVLVYYRSHSTRVNDERSSGVLDPLQWWEVRTPTRHYTLPNFPAQQHSHSR QQTNVPNGDMGRGFNPRLRQIIQQPHSRSTLQTSIQAPQVEENSKPTALSKLKKVIYNNNTTPKSLARRVSLYYRDNSNA LKERVKENDEDGKRCAVCLEDFEPKEEVMLTPCNHMFHEDCIMPWLTSKGQCPVCRFVIWERVNNNTSSSFNRNNDIVAN LEPGDLIGGELLSILRAMEVAFHLGSINYT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22765
2 266 265 1.2E-57 –
PANTHER
PTHR22765:SF234
2 266 265 1.2E-57 –
MobiDBLite
mobidb-lite
106 126 21 - –
Gene3D
G3DSA:3.30.40.10
159 232 74 3.5E-21
IPR013083
SUPERFAMILY
SSF57850
166 225 60 3.12E-22 –
Pfam
PF13639
174 216 43 8.1E-15
IPR001841
SMART
SM00744
174 216 43 0.0074
IPR011016
CDD
cd16454
175 216 42 1.41998E-20 –
ProSiteProfiles
PS50089
175 216 42 13.566
IPR001841
SMART
SM00184
175 215 41 1.5E-9
IPR001841

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0058600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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