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LotjaGi1g1v0058700.2

Overview

Field Value
Gene ID LotjaGi1g1v0058700
Transcript ID LotjaGi1g1v0058700.2
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description RING/U-box superfamily protein, putative; TAIR: AT3G58720.2 RING/U-box superfamily protein; Swiss-Prot: sp|Q940T5|RDUF2_ARATH E3 ubiquitin-protein ligase RDUF2; TrEMBL-Plants: tr|A0A151TL14|A0A151TL14_CAJCA E3 ubiquitin-protein ligase RNF133 family; Found in the gene: LotjaGi1g1v0058700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:8216948..8222125) extracted from Lotus japonicus Gifu genome v1.2.

GGGCTGGGCCGTTGGATGCTAACCAGGCCTCACTGAAAATAAAGAGTGTATTGCAATCAAAACTAAGGGTTTGCTCCTTC GCTATTACACACTCACTTCTCTTTACCCTGGCCGTGAACCCTACCACCCACCTCCTGATCCAATGGTATGTGCCTCTTCC CTTTCTCCTCCTTCTTCTTCTTCCTTCATCGCTTCACAGATTCGAATCCTCTTTTCACATTTTGATTCTCATGTTTTTCG TTTTGTTCTGAATTGAAATGAACTGAAAACCAGGCTTCCGAAAAGAAACTGGCGAACCCTATGAGGGAGATCAAGGTCCA GAAGCTCGTCCTCAACATCTCCGTCGGTGAGAGTGGAGATCGTCTCACCAGAGCAGCCAAGGTTTTTCATCACTCTTCTT ATTAGTTTTTTCTTCGTTATTTATTTTCAATTTTAAAATTGTTTTTTTTTTCTTTCTTTCTATGTTGCAGGTGCTGGAGC AACTTAGTGGTCAAACCCCAGTGTTTTCTAAGGGTAAGAGTTCTAAACAAATTTCAAAATGGGTGGTTTATTTGTGCTAG TAGTGGATATGAGTCTCTAAAATCTGTTAATTTAAAGGGATTTATTTTTAATGAAATTAGTGTGTCAATTTTATTTTGGG TTTTATTGATATTTACCTATAGTGCTTGTGAAGTTAATTTGAAAGAGATAAACTCTAGGGTTCGGGTTTCGGTCTATTTT AGGTTTGAAATGGGAGCTTCATTGTTTTTATTGATTGCAATGTGAAGAGCCTGATTGTTGGGTGATATAGTGGTAGTTTA ATAGTTTGTAGCTTTTGGGAATTACAGTCATGTGTGAACCTTTTATGTGTAACTAAATTCACGTTAGGGAATTCATAGGA CTTAGGAATGGGGAATATGAGCATTAAGATGTCAATTATTGTGCAGAAAGTGTATCCCTTCCCTCGAACTATACCTTTGT TTTGTTTGTTCTGAATTAAACCTTGTTTTTGATGTTATAGTTTTGTCTGGTATCTGTGGTTGTCTTATCTTTGACTTTCT TAAGTATATTCTCTTCTGTTCTGGCAGCCAGATACACTGTTCGATCCTTTGGAATCAGAAGAAATGAAAAGATTGCATGC TATGTTACTGTTAGAGGTGACAAGGCAATGCAACTTTTGGAGAGTGGATTGAAGGTTAAGGAATATGAACTTCTTAGAAA GAACTTTAGTGATACTGGGTGCTTTGGCTTTGGTATTCAGGAGCACATTGATTTGGGAATCAAGTAAGCTGAAGCACAAT TCTTTGATTTCATGCTATTGTTTTTTAACTTTTGTCAGAGAAAAACCTATTTAGATAGTTCTTGTGAGTCTACATAGTAC AAACTATACTTATTCATGATTTTGAATCTATCATAATATTTGTTTCTTCACTGTTGAACTTGACTTAAGTGTGTTTGGCA GAACTTATTCAAGTTTAGCTTATGAAAATTCCACATGACTAACTAAAACCTCTCTTTTAAGCTTATTTTGATAAGATTTG TTGATGGGTTTCTGAATAAATGCTTACTTATAGCTTCTTTTGTGCTTATCGTATTAAGTTTTCTGATTCTGATTATCATA AGTGCTTAAATGAGTTGTATACCCTAACCCAACCTCAAACCATATACAATTTTCTCTATTGCTGTTTTGGTTCTTTATAA AAAAGCTGTTTTATGATTCCTGTTTTATGTCAAGTGACTAGTTTCATTCCCCTCTTGTAGATTTTGAGGTCATGTTGTCA ATTTCTTTTATAATCTAAGATTTAAAACTATTTACACATTATTTGTCCCTGGCCCATTTCAGGTATGATCCATCCACTGG AATTTACGGTATGGATTTCTATGTTGTTCTGGAGCGCCCTGGTTACCGTGTGGGACGTCGCCGTAGGTGCAAGTCCCGTG TTGGGATTCAACACCGTGTCACAAAGGATGATGCTATGAAGTGGTTCCAGGTGAAATATGAGGGAGTGATCCTCAACAAG GCTCAGGCAGTGTTTTAATTCAACCAAGTCCACTTTAGGAGAGTATCTTATGTTTCCCAACTATAGTTTGATCTTTTTCA GATAGTATGCTAAGTTTCAGACAGAATTTTTTGGCATCCCTCAGGTGTCCTTGTAGGGGCATCAGGCAAATTTTCAATGA ATACTTTTGTTTGTCATTTTTGTGGTTTTATGATGAAAGCTCATGGATTTACTATTGTGCTGTTAAATGTTACTTGTGCT AAGTCCTGTAATGCATTGCAACAGTTTACAATGGTTTTTTTGCAACCAAATGTTACTTGTTTTTCTATGCAAAACAGACC TCGACATTATCTGTCAACCCACTTATTAGGTAGACTGGGTTTTGCTAAATATTTAAGCTCCCTCTTGGAATATTTATACA CTGAAACAAGTTTGTTTCTGTTGGAACTGGCCGAACCTATGTCTTTGCCTCATCCCTCATTTGGTGAAGAGTGAACCCTA ATCTCCATATACCACAGTTGCTACCCACTGTACACCTCTGCCAATGCTATGTCATGATGCTCATTATTGTCCAAACTCTG TCCATCATGCTATTGAACTACCAGAATGCATGCACAATGCAAGTTGCCTCTGCTCATAGCTTAACACTATCCATGCTGCC CACTTGAATCTTACATGTCACGTGTTCCACCCCCTTATTTTGAAGCTATCATGATAACCTGGATTATCATGACTTTCATT CCAATCCTTAAAAACATTAGGTTAGCTCAAATTGTAAGAGTTAGGGGACATAAGAGTGAGTCAGATGAATGATGAAGGGT CCAGAGTTCGAACCCTGAGGAGAAACTAATTTACTAACATTATTAACCATTAACATTTGCCTATAAAAAAAGTTAGGGTA GAAATGAAACATATTAGGAACATTAAATTAATAAAGCATCCATCAACACTTTAAGAACAAGATTCTTACTCTTATTTCTC TGCCTTCATTGCGGTGCTGCAGCCACCATACTAGAGCATCTTCAAGATGGAGTGAGAATCAGAATAGAAAATAATGGAAC TCAAAAGTAAAGGCTGCTGCCACCATACTAGAGCATCTTCAAGATGGAGTGAGAATCAGAATAGAAAATAATGGAACTCA AAAGTAAAGGGTAGAAGTGACAACATTACAAAGGATATATTCTTGCTGACATTTAAATAAATAGAGCCATGGATTCCCAA AGTGGGCAAATGAAGCAATATTTACACCCCAAGTAAGAAAAGAATATTTGTATGATCAATTGAGGAGGAAGGAAAGCGCT GAAACATGAGCAATTTCACGCCTTTGCCAGGGCGTTGGAGGAGAGGTGTTAGAGCCTATGATGCTCACACAACCAACACG AGTGAATCCAACGAAGTGCTTGTGTATTATAGATCTCACTCTACAAGGGTCAACGTAAGTATGTGCAGGTCTTGATTTAA TACCATCATTTTTAAGAGATGGCAGAGAAAGAAATCAAATTAAATTCATGTATTTAGAAGCAGAGAATTGAACTATAGCA TGTTCGGATCAACTTTTTATTGTTTTTAGAGTTAATTCTGAAACCCATAAGCTACTAACATAAGCTTCTTCTCAGTATTA ATTATGGTTTTAGAATCAATTGTAAAATGATTTCAAACCATCCACTTATCAAGTGTGTGAGGTTAACTACTAGTATGTAA TTTTGGTTCATATCAGCAGGATGAGAGGAGTTCAGGTGTACTAGATCCACTGCAGTGGTGGGAAGTCAGAACTCCTACAA GACACCACACTTTACCAAAGTAAGGCCAAATTGCAAACTAATTTGCTTTCGTTGAGACTTCCCTCATAGCATTACATACA TAGAAAAGAAAAGTAATCCCTACAAATTCAGGATTTCAATTTGTTTTGGTTACCGTATAGCCATTCAAAGTACTATTCTC TAGAATTGAAAAGGAAGATCACAAGAGACAAGTTTAGAGTAGTATTAAAATTCTTAGTACTAGCATGTAAGACAATGCAC AATTTGATTTGAATTTCACATTAAATCAACTCAACTGATGTATTCTTTTTCTTCCGGTGCTGTAGAGCTAGCTAGTGGAA CATGCTATTTATATTTTATAGCATGTTTGGAAATCCTTATTCTAAAGCACAAAATCAGTTATGAGAAAAAACTTCTGTGA GTAGCTACTAGCTTCTCAGTGCCAGAATTGATTCTGAGAAAAAATAAGTTGATCTAAACATGTTATAAGTTGCATGAACT TGTGATTTTTAGGAGAGGGAATCCTGATTGATTTACCAATTTTTAAGCAATCTTCAGTTTTCCAGCACAGCAACACAGCC ACAGCAGGCAACAAACCAATGTTCCCAATGGGGACATGGGAAGAGGCTTCAACCCTAGGCTAAGACAGATTATCCAGCAG CCACATTCAAGATCCACACTCCAAACAAGCACACAAGCTCCCCAAGTGGAAGAAAACACCAAACCAACATCTTTGAGCAA GCTTAAGAAAGTGATTTACAATAACAACACTACCCCAAAGAGTTTAGCTAGGAGAGTGAGCTTATACTATAGAGATAATT CCAATGCTTTGAAAGAGAGGGTGAAAGAAAAGGATGAAGATGGCAAGAGGTGTGCTGTTTGCTTGGAAGATTTTGAACCC AAAGAAGAGGTGATGCTCACTCCATGCAACCACATGTTTCATGAGGACTGCATAATGCCTTGGTTAACAAGTAAAGGCCA GTGCCCAGTCTGTAGGTTTGTGATTTGGGAGAGGGTGAACAACAACACTTCATCATCTTTCAACAGGAATAATGATATTG TTGCCAATTTGGAACCTGGTGACCTGATTGGTGGAGAGCTTTTGTCAATTCTGAGGGCCATGGAAGTGGCTTTTCACTTG GGGAGCATAAATTACACATAAGAGTTTTACTAAAATTAGTCTTCATCGCATCATTAGTAAGAATTTGCTTAAAGTTGGGG TGAAGGTTTGATTTAAAAGTTTTTATCATGTAACTAGTGTTTTTTACCCGCGCGTTGCACGGGGAATATGTATATTATAT TTGATACATCAATCAAGACATTGGTTATTAATAATATAATAAACAATAAATGAAATAGAAGAGTAGGAAATGATGAGCAA TGTGGACAAAAAATCTTAAATTGAGACTCTTATTGCATAGATTGAAATTGGTATAATT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0058700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGCAATTTCACGCCTTTGCCAGGGCGTTGGAGGAGAGGTGTTAGAGCCTATGATGCTCACACAACCAACACGAGTGA ATCCAACGAAGTGCTTGTGTATTATAGATCTCACTCTACAAGGGTCAACCAGGATGAGAGGAGTTCAGGTGTACTAGATC CACTGCAGTGGTGGGAAGTCAGAACTCCTACAAGACACCACACTTTACCAAATTTTCCAGCACAGCAACACAGCCACAGC AGGCAACAAACCAATGTTCCCAATGGGGACATGGGAAGAGGCTTCAACCCTAGGCTAAGACAGATTATCCAGCAGCCACA TTCAAGATCCACACTCCAAACAAGCACACAAGCTCCCCAAGTGGAAGAAAACACCAAACCAACATCTTTGAGCAAGCTTA AGAAAGTGATTTACAATAACAACACTACCCCAAAGAGTTTAGCTAGGAGAGTGAGCTTATACTATAGAGATAATTCCAAT GCTTTGAAAGAGAGGGTGAAAGAAAAGGATGAAGATGGCAAGAGGTGTGCTGTTTGCTTGGAAGATTTTGAACCCAAAGA AGAGGTGATGCTCACTCCATGCAACCACATGTTTCATGAGGACTGCATAATGCCTTGGTTAACAAGTAAAGGCCAGTGCC CAGTCTGTAGGTTTGTGATTTGGGAGAGGGTGAACAACAACACTTCATCATCTTTCAACAGGAATAATGATATTGTTGCC AATTTGGAACCTGGTGACCTGATTGGTGGAGAGCTTTTGTCAATTCTGAGGGCCATGGAAGTGGCTTTTCACTTGGGGAG CATAAATTACACATAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0058700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSNFTPLPGRWRRGVRAYDAHTTNTSESNEVLVYYRSHSTRVNQDERSSGVLDPLQWWEVRTPTRHHTLPNFPAQQHSHS RQQTNVPNGDMGRGFNPRLRQIIQQPHSRSTLQTSTQAPQVEENTKPTSLSKLKKVIYNNNTTPKSLARRVSLYYRDNSN ALKERVKEKDEDGKRCAVCLEDFEPKEEVMLTPCNHMFHEDCIMPWLTSKGQCPVCRFVIWERVNNNTSSSFNRNNDIVA NLEPGDLIGGELLSILRAMEVAFHLGSINYT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22765:SF234
2 267 266 2.9E-57 –
PANTHER
PTHR22765
2 267 266 2.9E-57 –
MobiDBLite
mobidb-lite
106 127 22 - –
Gene3D
G3DSA:3.30.40.10
160 233 74 3.1E-21
IPR013083
SUPERFAMILY
SSF57850
166 226 61 3.12E-22 –
SMART
SM00744
175 217 43 0.0074
IPR011016
Pfam
PF13639
175 217 43 8.1E-15
IPR001841
CDD
cd16454
176 217 42 1.80082E-20 –
SMART
SM00184
176 216 41 1.5E-9
IPR001841
ProSiteProfiles
PS50089
176 217 42 13.566
IPR001841

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0058700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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