Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0061000 |
| Transcript ID | LotjaGi1g1v0061000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | rRNA-processing protein PIN domain protein; TAIR: AT2G34570.1 PIN domain-like family protein; Swiss-Prot: sp|Q9BRU9|UTP23_HUMAN rRNA-processing protein UTP23 homolog; TrEMBL-Plants: tr|A0A0R0G9Y3|A0A0R0G9Y3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0061000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:8544636..8549438) extracted from Lotus japonicus Gifu genome v1.2.
GTTCACCTCATCTCTTAACTATGAAATTGGACGTTCAATCATATAATTCATGAGAAAGATACACATTTTATTTTCATGTC AGATTATAGTCGTTGGACTAAAGAAGTCTAACTATTTATCAACGGTGCTGAACTTTGTCCGCATAATTTAATTTCGAAAT TATCAAATCAAATTAGTGTAGATTTTGAAACCCTAATATCAACCTTGTCATCAACACCGCCGAGACTCTCAAACGCCCAC AACCAAGGCAAGCTTGCACACTGTTCATTCCTCTTTCGATTCCGAGCTTCTTCCCTTCCTTTGTGTGAACTATGAATCAA TAACCACTTTCAATTCTCGCAGATGAAGGTAAACAAGCAGAAGCGGCATCGGAAGACTCTCACATTCTACACCGCTTGCC ACGGTTTCCGGAAGCCATTCAAAGTTCTCTGTGATGGCACGTTCGTTCATCACCTTCTCGCGAATCGTATCATACCTGCT GACAAAGCCCTCAGCAATATTCTCAGTGCTAATGTCATACTCTACACAACCAGGTCCGTTTTTTGTGCCCTAATATATAT TTTCAATCTGTTTCTTTGCACAATATTATTGGTATAATGTGTAATTTGTTTAATTTTGAATTCTTTATTTTTTATTTTTG GGTTCTGTGATTTTCTATGTTAATTTGGATTTTGGATGGGGATGATGCAGATGTGTTCTAGCTGAATTGAAACGTCTCGG TGCGTCGTATTCGGAGGCTCTTAATGCAGCTAATAAGCTTATGGTCGCGAGGTATTATTATCTCATCTCTTTCGATATAT ATGCAGATTTGTTGGATTACTTTTGCCAAATTGTGAATCCATAGTAGTTTGATACTCTTTGACTAGCATGTATTTTTATA GAGTAAATTACACTCCACTACCGTGAGGTTTTCTTATATCACACTAAACTCCAAACTTACTCAAATGGTGGAGTCAGGAG GGTAATATTTGAGTAAATTTGGAGTTTAGTGTCACACATGGAAACCTCAAGGTAGTGGAGTGTAATTTACTCATTTTTAT ATGTCAAACAACTTTTTTCCCAAACAGCTCTCATAGGACTACTATTACATTAAAAAAAAATTGACTGAGAGAAGTGTTTT GTTAAAAGGCTTCCTTATTTGAAGAAACGAAGCTGTATTTTTATGCCTAGTCGGCGGTATTTGATAGTCTATTGGGGTCA TTGTTGTTTGTTTGGGTTCTAAGATATTTGGGCAAAAGTATTGCTATGGAGAGAGTTATTGACTTTGATTTATGAACTCC AATGTTCAGGTGTGAGCATGATAAATGTGTGAGGGCAGATATCTGCATCACGGAGGTTGTTGGAGAAAAAAATTCTGAGC ACTTCTTTATTGCTAGTCAGGACGGTGACCTGCGGAAGAAGTTGCAAGAGGTTAGTATAATTTGTTCGTTGTTAATTACC AAAATTATATATGTTATTTTCATTACTATAATTTCTTTATTGTTGATTACCATTTTCTTGTAAAAATGGCCAAATTTTAT TCACATTATTGATGAACTACATGATTGAATGATATCTCAATCTCAATAGAATCTCTCCTATAGGTTAGACTTAGAGTAGA CTGTACATATATCTTCAGAATATGTTCTGGGCAGGGAACTTCTATGCTTTTTTGATTGTTTAAATTTTGATACTCTGAAC ATGTAATTGTTACACTACACCCCTAAAGCTCCTCGAGACCGAATGATGTTGGAACCAGAGTCATTTATCCCAAAAGCTTG AATTGTGTGAGGTGGTGGGTTTGAACACCAATTTAATGTTGCTGTCTTTAGAGGATGCATTGCTGATGAATGTATCCGAG CGCAGTTGATGAGCTTGGTATTTAACTGGTAGTAAAATGACAGTCTTGTAGACTTTGCACCCTTTCCACACCAACTTTTT GATGCTGTAACTGCTTTGATTAGACCCGAAGTTAAACCATTTTCTGAAAAAAGTTGCTATGGCTGTGGGGTAACAAGTAA ACACTATCTTGGTTTATAACTGCCACTTCATGGCTTATTTACTTAATTGACGATCCTTATGATTTAAAAAGATAACTATT GTTGAAGAGTACTGGATACTTTCAGGTACTCACAGGGCATTGTTATATGCATGTGATGAGTTAGTTAGTGTAAGTCCGCA AAGCCAAAAATGTGATCTTATAACTGGAGGTGTAAATCTAATTAAAGGTAACCTAAAGGTTGGTCAAATTCGTTAGTTAG TTTAAGTGTCCTGTCAGCTCCAGAACATTACACGATTCCATAAATATGAGTTTTCATGTACTTATCTTCAGATTAGTAAT GTATACCGAGTTGAATTCATCTGTTCAACTTTTTCTTATTCAAGGGGATTAGATTTATGTAGTCTTTTTAGATATCTACC CAAAGACGTGAATTCCTCCCATTTCCGATCCCATTCCTGCTTAAATGTGTGAAGCATCTTTTAACTTGCCGGTGTTGCTG ATCGAGTTATTTGCCAGCATTGCAATGAACAGTGGTAGCTTCTATTATGGATGATTTTTTCTTGAGAGGAGTGTAGAGCA TTTCTAGTAGGTGTTGCTTATTAGAGTGATTGAAGAGGAGATTTTTTAACACCTTGTTGCTATCGTGTATGTTCTATGTT TTTTTGAACTCTGGCTTGTTTCTTTATGAATTTTAAATGGACACTCATCATTTTTTCGGTCTTCAGCCTATGTTCCTATT TGTGCAACAAGTGATTTACCTTGTTGCTATTGTGTATGTTCTATGTTCTTTGATGCTTTTACACATTAAAAGAAAAAATC AGAGAAACTTTTGTTTATTTGTGTCTAGGATGTGTTGGGGTGCTGTTATAATGATACAGGGCTTTTAGAATCGTTCCCTT GTACATTCTTTTATTCTTCTTTGTCTGCTTGGCGCAGGTACCTGGTGTGCCTCTCATATATGGTCTCAGAAATGCTCTTT TCCTGGAATCTCCATCTGCATTTCAGCGGGAATATGTCAAAACTTCTGAAGAAGGACGATTGCATATGAGTAAGAAAGAG TACCAGATATTTAGGGATAGGGCAATGAATAGATTGGCTGGCGAGGAAGCTAATGATTCCATAACTGGAGTAATGGAAAA CAAGGATTCTGGAGATCAAGCCATAAATGTGCAGGCAGTAAGGAGTATCACTTCAAGGAATAAGACAGACATCAAGGATA AACCTCAGTTTAAGAGGAAAAGGGCAAAAGTTAATATTTACTCTTTGCTGTATCTGTTTTGTTAGTTCGGGTTTTGATCA CCTCATAGCTAACTAAATAAATAACATGTTTTAATTAAATACCACATGTTTTTACTTTTTATCAACTTGAACAAAGCATT GCTGCTTTTAACAGCTTATGGTTCCCATTATTAGCATTATTTCTCATTTTTATATTTCTGTAAACTTTGCAGGGTCCAAA CCCGCTTTCGTGCAAAAAGAAGAAAAGTCATGAAAACCAAAATATTGGTTCTATGAAGGTATGGTGTGGCAGGATTTAAA TGTTTCTTAAGTTTGAAGACAAACATATTACTGCTCTACCTTGTGTTCAAATTCCTCTTTATTTAGAAGAACTGGAACTG CAAAGATCATGACCACGGTTGATTAGTGATGTGGCCTATGATATCTTTTAAGGAGATGATCACCTAGAAATTTTAAGTTA TTTGGTGAAAACTTATGATTGGTTTTTATATCTCTAATGGTTTTAATGCTGTCTAACCTGAAAGCCTGAACACTGAATTT TGTTTTTCCTTCAATTTTTAAATTTTGTTTTGATTGAGTTTTCAAGAATTTGTTTTTATTATGTACCTTCACCCTCTTCC TGTTACCAATACCATTGATTTAGTGTAAAAAGCATGATTGATGCAAACATTTGATGTTTAAATATTGAATGTGGGATGGT GTGTAGAAGTGGTATGCAATATGTATGTAGCATTTTCGAGCATGTTTTGGGAACTCTGCTAAAACATTTATGGTGTACTT CAGATTTACAATAAGATATTATATGTGAAAAGCATTACTAATAAGGTAGTTGTTTTGGAACTCTGCGAAACAATTTAGAT ATTGATGCTAGCTCCCATTTTTATATTTGTTCTGGTTTTGTTCTGGCATGGACATTGAGCAAACTTTGAATTGCTGAGTC CTGCACGTTCAGAATGATTTAATTATTATGTATTTATGTTATCTATTTGAAATGAGTTTTATCACCTGTAAGTTAATTTC TGTTTCCTAGAGATTAGCTAGATGTTTGTTAATTGTTATTCTTATGCAGGAAATGAAAGGAGACGACACAGTAAGGAGAA GTAGGAAAAGGACGAGGTCACGTAAACGGCAAATGCCTGCAGATATTGGCAATTAGGTAGATCATTTTTTCATTACCAAA AAATCGGTATTTATAGGAGAGCTCCTTGAGTTTGCTGCTTCTGGTGAATGAAGAGAGAAGCAAATTTTCCATGATGGCGT GGCGAGGGAAAATGCATATTAGTTGTACCTTTGAGTTTTATATCATCGAAGTTTATCAGAGAAATATCAATGGTCATATT GTATTTTTCTGTATATCTTATTATTTACCAAATTGTTATTTCATTATAGTTGAAGTTTTCTGATACCCAAATCTTAGCAA CCCTCGAACTTTGCTATGCCTCTTCAATTAGTGCCCATGTAGGCTAGCTAAGAGTGTGCTTAACTTCAGCTTCTGTTGTT TCTTTGGTAGTATATTTGTTATGTCATTTTTATTTGTCATCTCATTAGCCTATAACAATTTTTTTGCAAGAGGTAACATC TGG
CDS sequence (LotjaGi1g1v0061000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGTAAACAAGCAGAAGCGGCATCGGAAGACTCTCACATTCTACACCGCTTGCCACGGTTTCCGGAAGCCATTCAA AGTTCTCTGTGATGGCACGTTCGTTCATCACCTTCTCGCGAATCGTATCATACCTGCTGACAAAGCCCTCAGCAATATTC TCAGTGCTAATGTCATACTCTACACAACCAGATGTGTTCTAGCTGAATTGAAACGTCTCGGTGCGTCGTATTCGGAGGCT CTTAATGCAGCTAATAAGCTTATGGTCGCGAGGTGTGAGCATGATAAATGTGTGAGGGCAGATATCTGCATCACGGAGGT TGTTGGAGAAAAAAATTCTGAGCACTTCTTTATTGCTAGTCAGGACGGTGACCTGCGGAAGAAGTTGCAAGAGGTACCTG GTGTGCCTCTCATATATGGTCTCAGAAATGCTCTTTTCCTGGAATCTCCATCTGCATTTCAGCGGGAATATGTCAAAACT TCTGAAGAAGGACGATTGCATATGAGTAAGAAAGAGTACCAGATATTTAGGGATAGGGCAATGAATAGATTGGCTGGCGA GGAAGCTAATGATTCCATAACTGGAGTAATGGAAAACAAGGATTCTGGAGATCAAGCCATAAATGTGCAGGCAGTAAGGA GTATCACTTCAAGGAATAAGACAGACATCAAGGATAAACCTCAGTTTAAGAGGAAAAGGGCAAAAGGTCCAAACCCGCTT TCGTGCAAAAAGAAGAAAAGTCATGAAAACCAAAATATTGGTTCTATGAAGGAAATGAAAGGAGACGACACAGTAAGGAG AAGTAGGAAAAGGACGAGGTCACGTAAACGGCAAATGCCTGCAGATATTGGCAATTAG
Protein sequence (LotjaGi1g1v0061000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKVNKQKRHRKTLTFYTACHGFRKPFKVLCDGTFVHHLLANRIIPADKALSNILSANVILYTTRCVLAELKRLGASYSEA LNAANKLMVARCEHDKCVRADICITEVVGEKNSEHFFIASQDGDLRKKLQEVPGVPLIYGLRNALFLESPSAFQREYVKT SEEGRLHMSKKEYQIFRDRAMNRLAGEEANDSITGVMENKDSGDQAINVQAVRSITSRNKTDIKDKPQFKRKRAKGPNPL SCKKKKSHENQNIGSMKEMKGDDTVRRSRKRTRSRKRQMPADIGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 279 | 279 | 6.3E-87 | – | |
| PANTHER | 1 | 279 | 279 | 6.3E-87 | – | |
| Gene3D | 1 | 156 | 156 | 5.3E-49 | – | |
| SUPERFAMILY | 25 | 149 | 125 | 3.73E-13 | ||
| CDD | 26 | 148 | 123 | 4.47158E-52 | – | |
| Pfam | 53 | 148 | 96 | 2.0E-26 | ||
| MobiDBLite | 212 | 285 | 74 | - | – | |
| MobiDBLite | 242 | 268 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Small-subunit processome | A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins. |
Expression pattern of LotjaGi1g1v0061000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…