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IPR006984

Source: InterPro

Description

IPR006984 is a rRNA-processing protein Fcf1/Utp23.

<p>Utp23 share homology with PINc domain protein Fcf1. They are components of the small subunit processome (SSU) that are involved in rRNA-processing and ribosome biogenesis [[cite:PUB00035397], [cite:PUB00067997]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0032040
Cellular component Small-subunit processome A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
Subterm of

Associated Lotus transcripts 11

Transcript Name Description Predicted domains Domain count
Lj0g3v0324239.1
– PREDICTED: rRNA-processing protein FCF1 homolog [Glycine max] gi|356543662|ref|XP_003540279.1|
Domains
10
Lj1g3v5021220.1
– PREDICTED: rRNA-processing protein FCF1 homolog [Glycine max] gi|356543662|ref|XP_003540279.1|
Domains
10
Lj2g3v2905070.1
– PREDICTED: rRNA-processing protein UTP23 homolog [Glycine max] gi|356554407|ref|XP_003545538.1|
Domains
5
LotjaGi1g1v0061000.1
– RRNA-processing protein PIN domain protein; TAIR: AT2G34570.1 PIN domain-like family protein; Swiss-Prot: sp|Q9BRU9|UTP23_HUMAN rRNA-processing protein UTP23 homolog; TrEMBL-Plants: tr|A0A0R0G9Y3|A0A0R0G9Y3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0061000
Domains
9
LotjaGi1g1v0061000.2
– RRNA-processing protein PIN domain protein; TAIR: AT2G34570.1 PIN domain-like family protein; Swiss-Prot: sp|Q9BRU9|UTP23_HUMAN rRNA-processing protein UTP23 homolog; TrEMBL-Plants: tr|A0A0R0G9Y3|A0A0R0G9Y3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0061000
Domains
9
LotjaGi1g1v0788500.1
– RRNA-processing protein FCF1-like protein; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr|I3T9S6|I3T9S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0788500
Domains
15
LotjaGi1g1v0788500.2
– RRNA-processing protein FCF1-like protein; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr|I3T9S6|I3T9S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0788500
Domains
10
LotjaGi3g1v0178700.1
– RRNA-processing protein FCF1 like; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr|I3T9S6|I3T9S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0178700
Domains
10
LotjaGi3g1v0178700.2
– RRNA-processing protein FCF1 like; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr|I3T9S6|I3T9S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0178700
Domains
15
LotjaGi3g1v0178700.3
– RRNA-processing protein FCF1-like protein; TAIR: AT1G26530.1 PIN domain-like family protein; Swiss-Prot: sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr|I3T9S6|I3T9S6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0178700
Domains
8
LotjaGi3g1v0178700.4
– RRNA-processing protein FCF1 like; TAIR: AT2G46230.1 PIN domain-like family protein; Swiss-Prot: sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog; TrEMBL-Plants: tr|A0A151TXS1|A0A151TXS1_CAJCA rRNA-processing protein FCF1 isogeny; Found in the gene: LotjaGi3g1v0178700
Domains
10

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd09864 CDD 1 9.09