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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0061000 |
| Transcript ID | LotjaGi1g1v0061000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | rRNA-processing protein PIN domain protein; TAIR: AT2G34570.1 PIN domain-like family protein; Swiss-Prot: sp|Q9BRU9|UTP23_HUMAN rRNA-processing protein UTP23 homolog; TrEMBL-Plants: tr|A0A0R0G9Y3|A0A0R0G9Y3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0061000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:8544792..8549708) extracted from Lotus japonicus Gifu genome v1.2.
AAATTATCAAATCAAATTAGTGTAGATTTTGAAACCCTAATATCAACCTTGTCATCAACACCGCCGAGACTCTCAAACGC CCACAACCAAGGCAAGCTTGCACACTGTTCATTCCTCTTTCGATTCCGAGCTTCTTCCCTTCCTTTGTGTGAACTATGAA TCAATAACCACTTTCAATTCTCGCAGATGAAGGTAAACAAGCAGAAGCGGCATCGGAAGACTCTCACATTCTACACCGCT TGCCACGGTTTCCGGAAGCCATTCAAAGTTCTCTGTGATGGCACGTTCGTTCATCACCTTCTCGCGAATCGTATCATACC TGCTGACAAAGCCCTCAGCAATATTCTCAGTGCTAATGTCATACTCTACACAACCAGGTCCGTTTTTTGTGCCCTAATAT ATATTTTCAATCTGTTTCTTTGCACAATATTATTGGTATAATGTGTAATTTGTTTAATTTTGAATTCTTTATTTTTTATT TTTGGGTTCTGTGATTTTCTATGTTAATTTGGATTTTGGATGGGGATGATGCAGATGTGTTCTAGCTGAATTGAAACGTC TCGGTGCGTCGTATTCGGAGGCTCTTAATGCAGCTAATAAGCTTATGGTCGCGAGGTATTATTATCTCATCTCTTTCGAT ATATATGCAGATTTGTTGGATTACTTTTGCCAAATTGTGAATCCATAGTAGTTTGATACTCTTTGACTAGCATGTATTTT TATAGAGTAAATTACACTCCACTACCGTGAGGTTTTCTTATATCACACTAAACTCCAAACTTACTCAAATGGTGGAGTCA GGAGGGTAATATTTGAGTAAATTTGGAGTTTAGTGTCACACATGGAAACCTCAAGGTAGTGGAGTGTAATTTACTCATTT TTATATGTCAAACAACTTTTTTCCCAAACAGCTCTCATAGGACTACTATTACATTAAAAAAAAATTGACTGAGAGAAGTG TTTTGTTAAAAGGCTTCCTTATTTGAAGAAACGAAGCTGTATTTTTATGCCTAGTCGGCGGTATTTGATAGTCTATTGGG GTCATTGTTGTTTGTTTGGGTTCTAAGATATTTGGGCAAAAGTATTGCTATGGAGAGAGTTATTGACTTTGATTTATGAA CTCCAATGTTCAGGTGTGAGCATGATAAATGTGTGAGGGCAGATATCTGCATCACGGAGGTTGTTGGAGAAAAAAATTCT GAGCACTTCTTTATTGCTAGTCAGGACGGTGACCTGCGGAAGAAGTTGCAAGAGGTTAGTATAATTTGTTCGTTGTTAAT TACCAAAATTATATATGTTATTTTCATTACTATAATTTCTTTATTGTTGATTACCATTTTCTTGTAAAAATGGCCAAATT TTATTCACATTATTGATGAACTACATGATTGAATGATATCTCAATCTCAATAGAATCTCTCCTATAGGTTAGACTTAGAG TAGACTGTACATATATCTTCAGAATATGTTCTGGGCAGGGAACTTCTATGCTTTTTTGATTGTTTAAATTTTGATACTCT GAACATGTAATTGTTACACTACACCCCTAAAGCTCCTCGAGACCGAATGATGTTGGAACCAGAGTCATTTATCCCAAAAG CTTGAATTGTGTGAGGTGGTGGGTTTGAACACCAATTTAATGTTGCTGTCTTTAGAGGATGCATTGCTGATGAATGTATC CGAGCGCAGTTGATGAGCTTGGTATTTAACTGGTAGTAAAATGACAGTCTTGTAGACTTTGCACCCTTTCCACACCAACT TTTTGATGCTGTAACTGCTTTGATTAGACCCGAAGTTAAACCATTTTCTGAAAAAAGTTGCTATGGCTGTGGGGTAACAA GTAAACACTATCTTGGTTTATAACTGCCACTTCATGGCTTATTTACTTAATTGACGATCCTTATGATTTAAAAAGATAAC TATTGTTGAAGAGTACTGGATACTTTCAGGTACTCACAGGGCATTGTTATATGCATGTGATGAGTTAGTTAGTGTAAGTC CGCAAAGCCAAAAATGTGATCTTATAACTGGAGGTGTAAATCTAATTAAAGGTAACCTAAAGGTTGGTCAAATTCGTTAG TTAGTTTAAGTGTCCTGTCAGCTCCAGAACATTACACGATTCCATAAATATGAGTTTTCATGTACTTATCTTCAGATTAG TAATGTATACCGAGTTGAATTCATCTGTTCAACTTTTTCTTATTCAAGGGGATTAGATTTATGTAGTCTTTTTAGATATC TACCCAAAGACGTGAATTCCTCCCATTTCCGATCCCATTCCTGCTTAAATGTGTGAAGCATCTTTTAACTTGCCGGTGTT GCTGATCGAGTTATTTGCCAGCATTGCAATGAACAGTGGTAGCTTCTATTATGGATGATTTTTTCTTGAGAGGAGTGTAG AGCATTTCTAGTAGGTGTTGCTTATTAGAGTGATTGAAGAGGAGATTTTTTAACACCTTGTTGCTATCGTGTATGTTCTA TGTTTTTTTGAACTCTGGCTTGTTTCTTTATGAATTTTAAATGGACACTCATCATTTTTTCGGTCTTCAGCCTATGTTCC TATTTGTGCAACAAGTGATTTACCTTGTTGCTATTGTGTATGTTCTATGTTCTTTGATGCTTTTACACATTAAAAGAAAA AATCAGAGAAACTTTTGTTTATTTGTGTCTAGGATGTGTTGGGGTGCTGTTATAATGATACAGGGCTTTTAGAATCGTTC CCTTGTACATTCTTTTATTCTTCTTTGTCTGCTTGGCGCAGGTACCTGGTGTGCCTCTCATATATGGTCTCAGAAATGCT CTTTTCCTGGAATCTCCATCTGCATTTCAGCGGGAATATGTCAAAACTTCTGAAGAAGGACGATTGCATATGAGTAAGAA AGAGTACCAGATATTTAGGGATAGGGCAATGAATAGATTGGCTGGCGAGGAAGCTAATGATTCCATAACTGGAGTAATGG AAAACAAGGATTCTGGAGATCAAGCCATAAATGTGCAGGCAGTAAGGAGTATCACTTCAAGGAATAAGACAGACATCAAG GATAAACCTCAGTTTAAGAGGAAAAGGGCAAAAGTTAATATTTACTCTTTGCTGTATCTGTTTTGTTAGTTCGGGTTTTG ATCACCTCATAGCTAACTAAATAAATAACATGTTTTAATTAAATACCACATGTTTTTACTTTTTATCAACTTGAACAAAG CATTGCTGCTTTTAACAGCTTATGGTTCCCATTATTAGCATTATTTCTCATTTTTATATTTCTGTAAACTTTGCAGGGTC CAAACCCGCTTTCGTGCAAAAAGAAGAAAAGTCATGAAAACCAAAATATTGGTTCTATGAAGGTATGGTGTGGCAGGATT TAAATGTTTCTTAAGTTTGAAGACAAACATATTACTGCTCTACCTTGTGTTCAAATTCCTCTTTATTTAGAAGAACTGGA ACTGCAAAGATCATGACCACGGTTGATTAGTGATGTGGCCTATGATATCTTTTAAGGAGATGATCACCTAGAAATTTTAA GTTATTTGGTGAAAACTTATGATTGGTTTTTATATCTCTAATGGTTTTAATGCTGTCTAACCTGAAAGCCTGAACACTGA ATTTTGTTTTTCCTTCAATTTTTAAATTTTGTTTTGATTGAGTTTTCAAGAATTTGTTTTTATTATGTACCTTCACCCTC TTCCTGTTACCAATACCATTGATTTAGTGTAAAAAGCATGATTGATGCAAACATTTGATGTTTAAATATTGAATGTGGGA TGGTGTGTAGAAGTGGTATGCAATATGTATGTAGCATTTTCGAGCATGTTTTGGGAACTCTGCTAAAACATTTATGGTGT ACTTCAGATTTACAATAAGATATTATATGTGAAAAGCATTACTAATAAGGTAGTTGTTTTGGAACTCTGCGAAACAATTT AGATATTGATGCTAGCTCCCATTTTTATATTTGTTCTGGTTTTGTTCTGGCATGGACATTGAGCAAACTTTGAATTGCTG AGTCCTGCACGTTCAGAATGATTTAATTATTATGTATTTATGTTATCTATTTGAAATGAGTTTTATCACCTGTAAGTTAA TTTCTGTTTCCTAGAGATTAGCTAGATGTTTGTTAATTGTTATTCTTATGCAGGAAATGAAAGGAGACGACACAGTAAGG AGAAGTAGGAAAAGGACGAGGTCACGTAAACGGCAAATGCCTGCAGATATTGGCAATTAGGTAGATCATTTTTTCATTAC CAAAAAATCGGTATTTATAGGAGAGCTCCTTGAGTTTGCTGCTTCTGGTGAATGAAGAGAGAAGCAAATTTTCCATGATG GCGTGGCGAGGGAAAATGCATATTAGTTGTACCTTTGAGTTTTATATCATCGAAGTTTATCAGAGAAATATCAATGGTCA TATTGTATTTTTCTGTATATCTTATTATTTACCAAATTGTTATTTCATTATAGTTGAAGTTTTCTGATACCCAAATCTTA GCAACCCTCGAACTTTGCTATGCCTCTTCAATTAGTGCCCATGTAGGCTAGCTAAGAGTGTGCTTAACTTCAGCTTCTGT TGTTTCTTTGGTAGTATATTTGTTATGTCATTTTTATTTGTCATCTCATTAGCCTATAACAATTTTTTTGCAAGAGGTAA CATCTGGTTGAGAAGCTATGTGTAAAAGTTAAGCTACACATCATCGAATACACCAAATGGATTTTATTTTAGGTGGATAT GTTTTTGTGCCTAAATTCTAGTATGAGTCACAAAAGGAACCTATTTTTCTTGATTTTAGCTCAATATCTTAGGTGCCCAC AGGGTGGGGAAGTTTCAAAATGGTCCACCGGTGGACCAAGGGTCATAGTAGTAATTTACAAAATAAAAATATAAAAAAAA AATTGTGAAAAAAAACCCTCTCTACAAGTTGATGAGC
CDS sequence (LotjaGi1g1v0061000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGTAAACAAGCAGAAGCGGCATCGGAAGACTCTCACATTCTACACCGCTTGCCACGGTTTCCGGAAGCCATTCAA AGTTCTCTGTGATGGCACGTTCGTTCATCACCTTCTCGCGAATCGTATCATACCTGCTGACAAAGCCCTCAGCAATATTC TCAGTGCTAATGTCATACTCTACACAACCAGATGTGTTCTAGCTGAATTGAAACGTCTCGGTGCGTCGTATTCGGAGGCT CTTAATGCAGCTAATAAGCTTATGGTCGCGAGGTGTGAGCATGATAAATGTGTGAGGGCAGATATCTGCATCACGGAGGT TGTTGGAGAAAAAAATTCTGAGCACTTCTTTATTGCTAGTCAGGACGGTGACCTGCGGAAGAAGTTGCAAGAGGTACCTG GTGTGCCTCTCATATATGGTCTCAGAAATGCTCTTTTCCTGGAATCTCCATCTGCATTTCAGCGGGAATATGTCAAAACT TCTGAAGAAGGACGATTGCATATGAGTAAGAAAGAGTACCAGATATTTAGGGATAGGGCAATGAATAGATTGGCTGGCGA GGAAGCTAATGATTCCATAACTGGAGTAATGGAAAACAAGGATTCTGGAGATCAAGCCATAAATGTGCAGGCAGTAAGGA GTATCACTTCAAGGAATAAGACAGACATCAAGGATAAACCTCAGTTTAAGAGGAAAAGGGCAAAAGGTCCAAACCCGCTT TCGTGCAAAAAGAAGAAAAGTCATGAAAACCAAAATATTGGTTCTATGAAGGAAATGAAAGGAGACGACACAGTAAGGAG AAGTAGGAAAAGGACGAGGTCACGTAAACGGCAAATGCCTGCAGATATTGGCAATTAG
Protein sequence (LotjaGi1g1v0061000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKVNKQKRHRKTLTFYTACHGFRKPFKVLCDGTFVHHLLANRIIPADKALSNILSANVILYTTRCVLAELKRLGASYSEA LNAANKLMVARCEHDKCVRADICITEVVGEKNSEHFFIASQDGDLRKKLQEVPGVPLIYGLRNALFLESPSAFQREYVKT SEEGRLHMSKKEYQIFRDRAMNRLAGEEANDSITGVMENKDSGDQAINVQAVRSITSRNKTDIKDKPQFKRKRAKGPNPL SCKKKKSHENQNIGSMKEMKGDDTVRRSRKRTRSRKRQMPADIGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 279 | 279 | 6.3E-87 | – | |
| PANTHER | 1 | 279 | 279 | 6.3E-87 | – | |
| Gene3D | 1 | 156 | 156 | 5.3E-49 | – | |
| SUPERFAMILY | 25 | 149 | 125 | 3.73E-13 | ||
| CDD | 26 | 148 | 123 | 4.47158E-52 | – | |
| Pfam | 53 | 148 | 96 | 2.0E-26 | ||
| MobiDBLite | 212 | 285 | 74 | - | – | |
| MobiDBLite | 242 | 268 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Small-subunit processome | A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins. |
Expression pattern of LotjaGi1g1v0061000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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