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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0063300 |
| Transcript ID | LotjaGi1g1v0063300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphatidylglycerol/phosphatidylinositol transfer protein; TAIR: AT3G11780.1 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein; Swiss-Prot: sp|Q54SW1|Y2179_DICDI Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179; TrEMBL-Plants: tr|I3SDT8|I3SDT8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0063300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:8780261..8783560) extracted from Lotus japonicus Gifu genome v1.2.
TTAAGAGTCATAACTTATAAACAAAGCGTAACAAAAGCCTTGCAATCCACGAGTTATTATTATATCATTATTTATTCATG TACAAATGATGCCAAGTACAGTAGTCACCGATGTTCACGCGCTCCATAGCCATGGCGGTTCACTCTACTTCAACGCTTTA CCTTGTTCTCTGCTTATCATCCACCGTTTTGCTGCTACTTTCTTCTTCTCATGCACAAGCTCAGTCCCTCAAATACTGTG GTAATTAACTAAACTAGCTACCTTTACTCTTCAAACTTTTAGTTCATGATTTTGTTTTGTTTATATAATTCTTCAACATT CATCATTGATATGCCTCATACTTAGTTTTGCAATACTTGAGAGCTTCCTGTTTGAGATTGCATGTTGCAAGTAGGGAGAG AAACATAGAGTGACTGACTCAGCTGCCATTTCTGGTATTAATAGCTGAGATGAAAAACGGTAGAAATAGAACTCCTTTGT GGAATTAGGGAACCTGTTTAATTTGCTTGGACAATATAAACCCCTATCAGAAGACATGGGGTCAAAGGCTGTCATGTGCG TGTCACGTGATTACACTGTGTTGTTTAGTTTTTGTTTTGTTTTTTGTTACAAAGAAATGTTAGTTGTTAGTTATTAGTAA ATTAGTTCCTTTATCAGGGTTTGAAGTTTGAACCAACCCTGACCCTTCACCCTTCAATATCCTTCATTTCCCTTAGCTCA CCCACCCCACCCACAATGTGTTGTTTAGTGGTTTTGTTGTTGAATTGTTAGTTAGTTTGAAATGTTCACTGGTTTAATTA CAAGTGGGTAGTTAAACCAAAATGCAAACTTCTTTGCAATTTGGGTCGGCAACTTGGCATGCCTGGCGGTTAGACCCCGG TTTGAGCCTCACCCCAAGGGCGCGGGTTTGAATCCCCTAGAGATCTCTGACGCTCCATCTTGCTACTGGAGTGGGTCTCG ACTGGCCTCCACAGAGGTAATAGAGGAGATAATCCTCCTCCGTTGGAGATTCTCAGTATGTCATTGGCAACCTGTTCCGT AGGCCTGGGGTGCCTCTCCAAGCCCTACCATTTTTTTACAACAAAAAAAAAGTTGTGTAATTCACCAATTCTAGTTAATT TATTTATTGTTCAGCACTAGTTGAAAAATGTTCAAGTTCTATGGTGATGTATTATTTTTTTATTTTCACTATTTTGTTTT GGGGGCCTAGCTCTTGCATTATTGTTAGTTTTTTTATTCTTTGTTATTGTAGTTAGCTCTTGGTTTATTGATTTGAAGTT TGTATATGTATGGTATGCAGATAAGAATGCAGACTATGCTGTGAAGGTGAGTGGAGTGGAAATATTACCTGACCCAGTGG TGAGAGGAGTGCCGTTCACCTTTAAGATCGCAGCTTATACTGGTGACACTTCTCTTTCTAATTCTAATTAGTTTTTCCCC CCTCCTCCCGCCATGCTTTGTCTTTGTATCATTGTATGTTTGTGTGACACTTATGCTTTACAAAATTTCAAGAATGAACT TTAATATTAGTGGAAATGTAATTGATTATCTGTCAAGCAGGTGAACCAATTCCCAGTGGTGATTTACTATATGAAATTTC ATATGCTGGGATAGAAGGAGAACCTGCTACATTTCTCCATGATCTCTGTGAGGAAGCACCTTGTCCTGTTCCTGCAGGCC ACTTTAAGCTTGTTCATACCGAATTATTACCCTCGGTTACCCCACCGGTAAGTCTCATTTTACCAAGGTCACGCTTGTAA GAGCTTATTTTATAGCATAAGCGCTTTTGCTACTGTTTGTGAGCGCTTTTGTATATAGTTTATGCATTTCTATAAGCTGT TTTGAATTAATTTCAAAAGCTGTTCAGATTAACTTATGAATAAGAGCTAATGTTTATCTATAACCTATTTTCAGCTTATT TCAAAAAGTTTCTCAAATCTGTTTAAGTTGTTTACCCGAATTCACCCCAAATATATATACTCTGTACAATGCTGTTGCCA TTTTTAAGATATCAACCTGTGAGGAACCCCTTCACATTTATGAATTTCCTTGGCAAGATATGATATATTGCTTTGCTTTA AAAAAGTTCGCAAGATATTAATGGTTCTTAGTCATAGTGATAATGATATTGCTTTATCCATAATCAAGAGAAATTGATGC TTTCTCTTCCTCATCCTGGTTTTCATCTATGTGGTATGGGAACTGTTGCAGCTTAGTATCACCATAACTCAAGGATACTA TTTGTTGATTCAGTTTTATTTTCCTCATCTTCACTTAGTTGTTTGATTTTAGAAATTTCTATGTAATGCTCTAAGAAAAA ATAAATTCATTATCAACTTATAACTGTATACTTCAATTGCAGGGCACTTATAATGTGAAGCTGAACTTTAAGGGTCAGAA CGACAAGCTGTTAACTTGCATTATCTTTCCCTTCAAAATCGGTTCTAAATCTTCAGAGTCTGCAAGTGCTATGTAGCTGT CCAGCACAAAACTGACCTTATAAATGGCAGTTATGGTTTAGTTCTTAACCCTCCATGTGAACTAGTGAAGTGCCATGCTA TGAGTTATAAATAAAATGTTTATTTCCCCCAATGAGTAAGTTGCCCAAGAATTTATTATGTGTTCGGTTTTGCAATGAGA ATCTTCCAAAAGAGTTTTGCTAGTATATAGCATGTGATACTAGACGAGATGAAACTTTTAAATTTATCGTGTACTTTCTT TTCTTGAGTACAACAGTTGTTCTTTGGGAAATTTTGCAAAGAAAGAAGGAATATATTGTAAATTTATAATAATGATGCCG TCTTCTTCTACAAACGTAAAAAATTGGGCCGTCCACAATTTTTTAAGCAAAATGTTGGGTGAACACCTCACCTAGAGCGA GATAGGAAGAGAAGAGAGAAAAATGATATATGTGATATTTGATGTGGAAGTAAAAGAGAGATAGAGAAAAAAATATAGGT GTTTGGGGTACGAATTGAAACTCTTAATTGTTGAGTATTGCGGTCTACAATAATAAAGTTATTATTTCATTTTCTCTTAT GATGGGCAGATACCCCATGGTAAGTCGGAAAGAAGAGTTCTGAGTCATAAATCACTCGGTGTGTGTTTGTTTTTGTGTTC AACTTAGTTGAAAGGTTGTTCTATGTATGAATCTCGATTTCCAAAGCAAAGTTAGTCAACGAAACATACTTGTAGAGTTA GAGTTCGAGTTGGATGAACGTACGTTTATTTTCAGCCTAACGGTTATTCAAACAGTGCCTCAATAGTATAAACACCTGCA AACACATAATTTTCTCTTTA
CDS sequence (LotjaGi1g1v0063300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCACGCGCTCCATAGCCATGGCGGTTCACTCTACTTCAACGCTTTACCTTGTTCTCTGCTTATCATCCACCGTTTT GCTGCTACTTTCTTCTTCTCATGCACAAGCTCAGTCCCTCAAATACTGTGATAAGAATGCAGACTATGCTGTGAAGGTGA GTGGAGTGGAAATATTACCTGACCCAGTGGTGAGAGGAGTGCCGTTCACCTTTAAGATCGCAGCTTATACTGGTGAACCA ATTCCCAGTGGTGATTTACTATATGAAATTTCATATGCTGGGATAGAAGGAGAACCTGCTACATTTCTCCATGATCTCTG TGAGGAAGCACCTTGTCCTGTTCCTGCAGGCCACTTTAAGCTTGTTCATACCGAATTATTACCCTCGGTTACCCCACCGG GCACTTATAATGTGAAGCTGAACTTTAAGGGTCAGAACGACAAGCTGTTAACTTGCATTATCTTTCCCTTCAAAATCGGT TCTAAATCTTCAGAGTCTGCAAGTGCTATGTAG
Protein sequence (LotjaGi1g1v0063300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFTRSIAMAVHSTSTLYLVLCLSSTVLLLLSSSHAQAQSLKYCDKNADYAVKVSGVEILPDPVVRGVPFTFKIAAYTGEP IPSGDLLYEISYAGIEGEPATFLHDLCEEAPCPVPAGHFKLVHTELLPSVTPPGTYNVKLNFKGQNDKLLTCIIFPFKIG SKSSESASAM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 37 | 37 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 37 | 37 | - | – | |
| SignalP_EUK | 1 | 37 | 37 | - | – | |
| Phobius | 1 | 37 | 37 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| PANTHER | 8 | 165 | 158 | 4.6E-67 | – | |
| PANTHER | 8 | 165 | 158 | 4.6E-67 | ||
| Phobius | 18 | 29 | 12 | - | – | |
| Phobius | 30 | 37 | 8 | - | – | |
| Gene3D | 37 | 161 | 125 | 3.0E-6 | – | |
| Phobius | 38 | 170 | 133 | - | – | |
| SUPERFAMILY | 38 | 159 | 122 | 8.4E-21 | ||
| Pfam | 39 | 159 | 121 | 3.8E-16 | ||
| SMART | 40 | 157 | 118 | 4.8E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0063300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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