Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0070800.1

Overview

Field Value
Gene ID LotjaGi1g1v0070800
Transcript ID LotjaGi1g1v0070800.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Indole-3-glycerol phosphate synthase; TAIR: AT5G48220.1 Aldolase-type TIM barrel family protein; Swiss-Prot: sp|P49572|TRPC_ARATH Indole-3-glycerol phosphate synthase, chloroplastic; TrEMBL-Plants: tr|G7KH34|G7KH34_MEDTR Indole-3-glycerol phosphate synthase; Found in the gene: LotjaGi1g1v0070800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:10064736..10071410) extracted from Lotus japonicus Gifu genome v1.2.

CTTGTGATGAATTTTTAGATTTTTAGACAAGCCCTTTAGATGTATTGTTCAGTCCAAAATTCAACTCCAATGCAGATTTT TTTGTTAGATAATGAAATGCAGATTTTTATGTTAGGCAATGATAACCTAATTTAACCGCAAATATCAATTTTGTGCTCCA ATCCAAACCCAACCCAGTGCAATGTTTCTGCCAGAAAACGCATCATTAACAAGTTGTGGCACCTAGAATTTCCTGGTACG TGTTGCATTTGACAACGTAGCAGAGCTTGTTTCCTCTGTCGACAGTCCCGCGTATGTATATGTAACGCATCCCCTTCAAT CTTCAATTTCATCATCATCATCTTCTTCTTCAATGGAATCTTTGGCTTCTCTCAAGGCTCCCTTTCAGGCCCTCCATCTC TCTTCTCCCAGACCCAGAACCTGGATTCCTCCAACCCATTTGAATACTTCTAGACAAAACTCATTTTTCTCTATGTCTGT TCGTGCCCAGGTGAATTTTTTAACAAATTTTCAATCTTTTTGTAGCCTTTTATTGTTTCTCATTGTTCACTAATCTGGGG TTTCTCTCTATCTCTCTGGGGTGTTGACTTAGTTGATTTACTGATAAATGTGTTCAATTGAAGTGTGTAGATGCATAGTG TTTATATTATGACTTTATGAGGAACCCCTTTTGATTTTGTGATGTTTTGATTAGGTGGGGTCTGATGAGGGTTCACCTAC AATAGCTACATCTAGTGAACCTATTGCAGAAGTTCTCAAAGTTAAGGAGTGGGAGGTGGGAATGTTCCACAATGAGGTTG CTGCTAGCCAGGGTATAAGAATAAGGAGAAGGCCTCCAACTGGACCACCTAATCATTATGTAGGACCCTTTCAATTCCGG CTGCAGAATGAGGGCAACACACCGCGTAACATTCTGGAAGAGATTGTGTGGAACAAGGACAAAGAAGTTGCATATGTATA ATGATTGATTTGCCTTGTGTTGTATTGTTTATTTTTCTTTCAAGATGTGCATATGTTGTTTTTTCATGGAATAAAATTGA CTGAGATACCGCGAACTGTTTGATTTTCAGCTTAAAGAAAGAAAACCCCTCGGTATGCTGAACCAAGCCCTTGCAGGTTC CCCACCTGCTAGGGATTTCATTGGTGCTTTAAGGGCAGCTAATGAACGATCTGGATTGCCAGCACTGATAGCTGAAGTGA AGAAAGCTTCACCAAGTAGAGGTATCTTGAGAGAGGACTTCGATCCAGTAAGTTTGTCTTGTTTTCTACCATTATCTTCG CTTAGATTTATGATCTTTTTACTGTATTTATAATGGTCTTAAATTTTTATTGATGTCATGTGAAATGATCTCTAACTGGG TGGAAGTCCATTGCATCTTTTTGGTTAGAGTCACTGAGTCAGACTGTTCAACTGTATTTATTAAATTTACTTGCTACACC AGAGAGATATTTAAATAATTTCACACTAATATCAATTTCTTCTTTCAAGCATCTGCTATAGGCTCTTAGTTTGCTTGTAC TATTATTGCATATATAAATTTGCTTTTACTATTATTACTTTTATAAAGTAAAACTTATTTTTGAAAGTGTTATCAAATAT CCGCCATGGCATTTTCTCATGGCGGTTTTTTTGGCTTTCCGCCATGGCCGATATCCCGCCATATGGCCGCAATATTCCGT CATATCCTGCCTTATTCCGCCATTATTTGTCATGTATGGCGGGATTTCTGCTTTCCGCCATGACCCGCCATCCGCAATTA ACAACACTCTACTTCCATTTACTTTTTCTTGTTAATTGTAAATATAAACTTATCTAAGAGTGGTTTTGTTGTGTAACATC AACATGATAACCATCGGCCAAATAAGTACAAAATACATAACAGTTCGAGTCTCTGTGAAGTATGAATTACCTATCTTTGG ATAGCTCATTTGTTTCTCAGTAAGTAGTCTAGGTTCATGGTTTGCAAAGAAGTTTTGCTTCAAAGTTAGGACCTGTTCTG AATTTATTTTATGAGAAAGATGATATGTTTCTTCGTTAAGTTGAGTATTTTAGTCTCCTTGTATTTTTGTATCACTTCAC CTAGCAAAACCTTCAAGCAACTTATCCAATCTGTTGTTAGTTTGTAACTTTGTATTTCTTCTTTTTATGATGTGTGCCAC TATTTTGTGGTTCTCTGTGATTAGGTTGAAATTGCTCAATCTTATGAGAAAGGTGGAGCAGCATGTCTAAGTGTTTTGAC AGATGAGAAGTATTTTAAGGTAAAGTGACTAACTTCGAATTTGTTAAATGCTCCTTATATATTGTGTTTCTTAATAATAA TTGGTTGGTTGGTTGAGAGCAAGATGAGGTTGCAGCTAAATGATAACTAACTCTTAGTTGGTATTGGTTTTCTTGATCCA GGGAAGCTTTGAAAATCTTGAGGCGATAAGAAATGCTGGAGTGAAGGTTTGCTTTGTGAATTGCATTAATCCTTGATATT GGATTTATTCTATCATCTAACGCTTTATGTAGACTTTGCTGATAAGAAAAGAAAAAATATGCAGTGCCCTTTGTTGTGCA AAGAATTCATCGTAGATGCATGGCAACTCTACTATGCTCGAACTAAAGGTGCGGATGCAGTCCTTTTAATTGCTGCTGTT TTGCCTGATCTTGACATCAAATACATGCTTAAGATATGCAGATTACTTGGACTGACCGCGCTTGTTGAGGTATGGTTGGT TCTTCTTTATTTGTTTCCTAAACTTGAATGACATCCAACATTAATGAAACTTTTTTGAACTTAGTGCTATCTGATGTTTA GTATGAATTTATTCTTGAAGCAACATTTATACTGTAAACTTGGTCCTACAGTGGGTTAATTTGAATGTATAATATGTAAA AAGTGATCCTCTTTAATGTTGGAACAATACCTGAACCAAATTATCTTTACTTGAAACCTTGAATCGTTATGACTAATTGT TATGATGATGCCTGCACTATATCCAGTACTTATACATAATAAATGCAAAAATCATCAATATAATTGCTTAGATCTCTCAA TTGTAGGGCTTATTTGTGCTGTAAACGTTGTCCTAGGTCTACTTTGTGCTGACTCTTTTACTTTATGATGGCCAAAAAGT TTTTTTTTGTTGTTTTAAATTTTATGTTGTTTTAACCTAGGTGCATGATGAGAGGGAATTTGATCGTGTACTTGGAATTG AGGGGGTTGAACTTATTGGCATCAACAACCGTAATCTTGGTATGCCTTATCACTCCTCTCTCTCCTATCCTTGCTCCTTT ATTTTTTATGAAAAGTATGCCTTAAAACATAATCTTGGAATTTTATCTTTTGTTGCTTGTACTCAAACTGGGATTAGTAA GTAAATTATGCAAATTGGCTTTAACTTTGAATTAAGTTCTTTAAATGTTTTGATCTGTTTTTTTTTTCCAATGGGATGTG ATTCTGGTTTATAATTTTACTTTCATTTTCTGCACATTTACCAATTCCCTTTCGTTACCACTTTCTAATATCCTTTTCGT AACTAGTGACAACCATCTTTTAAGGATAACAATTTTTTTTTGGAGTAGTACTATTTGATTTTATCTGAATGCTGTAGGTT GGAATGCTGTATGCTTCTTCTAGCAACATTTTTTCTGTTACTTCTATCTCTTCCTTTTTCTCCGCTCGTGTGTATTGTGA GTCTTGAAAATAAATCTTTCAGGTTCAAAGTATACATATGGGATTGGGAGTACTACTAGATTTCTACTTTACCTTGATTC TTTTGTGTCAATATATGAATATTTAAACTTGGATTTGACTCATCAACTTTAGCTTTTATTTTTTGGTGTTGCAGAAACAT TTGAGGTGGATATCAGCATCACAAAAAAACTTCTTGAAGGAGAGCGAGGCGAAACAATCCGTGAGAAAGACATCATAGTG TGTGGCCTTTCCTTTGTTTATTTGAACATACTTGAAGTAATGTCATTTTATTTTGAAATATCAATATCAATATCCTGCTC ATGATTATATGGTTTGTTCAGATTGTAGGGGAATCTGGTCTGTTCACTCCTGAGGATATTGCCTATGTACAAGAAGCAGG TGTTAAAGCTGTAAGTATTGGATTTTTTTTTTAATTTGCACGTATGCTGTCAATCTCGGCCGCCGACAAAACTGGGATAG CGGGATGGCCCTGAAACAGTGGTGGCCGGAGGTTCATCGGGGAGGTGAAGGGGAGGCATAGGCATTCGTGTTTCTCTTCC TTTAGTTCATTTTTAATGCGGAATTTACAGAAATGCCCCCTAAAAGTACCACTTTATGTTTTAAAGTGAAAGGCATTTTG GTAAGTTCGGTTGAAACCCTAAAGTTATGAAGAAGCTTCCCTGTTGCGTTACGATCTCACACGAAGATCTGCGATGGCTG CGACACTGAAGTGAATCACGATTGGACACATTGTCCTAGTGAGTGGCTGCAAGGCTGCGACGCCACATGATTAACTACCT AGATTTCTCACTACTTAAACACCCTCAAAATGGTGATTGACATGCTCAATCATGTTCATTGCGCCTTCTTTGGCCATAAC TTCAGGGACCAATGTGTTTGCCTAGAACACTAATATTACTTTTGACACCCCATTTCCACCTACATCCCGAGTGAGAAATA TAGAAAAGAGAGAATTAAGAGATATGATCGGATATGATGAAAAAGGTTGAGATGAAAAAAAAGGTGGAATTGGGACAAAA GTGAGTGCGTGTGAATGGATCAAAATTGTTGCTTGGAACTCTGTCCAAGGGGGTTACTCTCAATGTTAGCAAAATCTATA GCAAAATCGCAAAATCCTAAGATTTTACGATTTTGCAGTACTGTTCCGATTCAAAACGCATGTAAAATCTTTTTTTGGTG GAATCCCGTAGAATCTTAGATTTTAATCGTAAAATCGTAAAATCCTATTGAATCTTACGATTCTAGTATTTTTTTAATTT TTGAAACTGATTCTTAAAATTGGGGAAACTAAAGAGTTTTTTGACTTTGTGGAAAAAAATAACCCATCACCCAGCATTTA GGGGATTTCGAAATTGAAGCTCTAATTGATTGTAGTTGCCAAATTTGAATGGTTAATTGATAAGAATTAATAACTGATTG TATATTTCGAAAAATCAACCCATGTGACCCAACCTTCATGCATCTAATTGTCTATTTAATTCACTCATAGTAGAGTGAAT TGAATCACACATTCATGCTCTGTTTTCTTTTTCTGTAGTCTCTATCTAGGTCTCTTCCTCTTATGTTTTCTCTTCATTCT TCAACATCTTTGTTTTCCTTCATTCTTCAACGTCTCTGTTTCATCTTTTAGTTTCATGTTCTATTACTCCTATGATTTTG GATTGAAATTATGACTTATGTGGATGTTAATCTGATGAATTTTTATTCCAATTTTTGTTAAATGATGTGATTTACTAGAT ATCAATGCTATTTTTTATTTTTCTATTTATGGTAGAATCTTACGATTCAATTTACGATTATACGATTATACGATTTTGAA CCCCCTCTCCGATTCTACGTAGAATCTAGCTTTTCACAACATTGGTTACTCTGGTTACCATGGTGAATTGTTGAACACTT AGTATTTTTTTTCTGTTAACTTGTCGCAATTTCGACCCGTGTAGTGAAGACCAAAGGTCTCCCCAAGAGTGCAGCTCCTA GGAACCGAACTCTCGGCCTAGGGGTTCAAACACCAATTTTTACCACTGCAACACACTTGTTGGATTCAAACACTTTGTAT TTGTTGATTATGTTAAAATTTAAATAAATCTTGAACATTTAATGGTACACCATAGCAACTCCCATAATTTCACCATTTTA TTTCCCCTGCAGGTTTTGGTTGGAGAGTCTCTTGTGAAACAAAGTGATCCTGGGAAGGGAATCAGCAATCTCTTTGGCAA AGACATTTCTTTGGGTTGAAAGTTAGCTTTCATGAGATTTTGGCATTTGAGATAAACAGATTTTGATAATGTTCTTATCT GTTACCCACTCCTTTCTTTGCTTGCACTCAATTACCAAAATCTTATCAGCAACAAACATGTATCAAAATAAATTATGCTT GTTTAGAGATACTACACAACTAAATTATATCATTTTGCGGCCAAATGACAATTGTTCATTTTACACTAAGGTACTGTGTC TCATTTTCTCATTCCCTTCTCTCCTCTCTCCTTCATGTTGGACCCCATGTAGACCATTTCATTGTTCGGCTCTTGTGAAG AAAAAAAACTTTTACCAACAAAATACTAAAATTAATAAGTATATATTTTTAGTTCATCCACAATTCCACATGATTTTACA CTCTTGCTAGCTAGAAATTTTTTTTTTAATCCGTAAAGAAGATAAATGAAGTTCTGTCAGACACTTTACTTGTAACTTCT TTATAATACTTAGTTTGCATATATTACATGGTTTGATTAGAAGCAAAACATATATGGATACTTCTACAGTGAGTTAAAGG GTGAACTGGACCAGGATCTCATTACATATAGGAGATGGTTGATCTCTTCCGATGTAACAAAAAAAAAAGGAGATGGTTGA TATGATACCGATAGTTTGCAAAGTTGCTACCTTAAGACAGAATTTACACCTGCATGGCTTCACAAAATATTCTCCATAAG CAATCTAGCATTGAATCCTTGAATTGTTGGCAAAC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0070800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAATCTTTGGCTTCTCTCAAGGCTCCCTTTCAGGCCCTCCATCTCTCTTCTCCCAGACCCAGAACCTGGATTCCTCC AACCCATTTGAATACTTCTAGACAAAACTCATTTTTCTCTATGTCTGTTCGTGCCCAGGTGGGGTCTGATGAGGGTTCAC CTACAATAGCTACATCTAGTGAACCTATTGCAGAAGTTCTCAAAGTTAAGGAGTGGGAGGTGGGAATGTTCCACAATGAG GTTGCTGCTAGCCAGGGTATAAGAATAAGGAGAAGGCCTCCAACTGGACCACCTAATCATTATGTAGGACCCTTTCAATT CCGGCTGCAGAATGAGGGCAACACACCGCGTAACATTCTGGAAGAGATTGTGTGGAACAAGGACAAAGAAGTTGCATATC TTAAAGAAAGAAAACCCCTCGGTATGCTGAACCAAGCCCTTGCAGGTTCCCCACCTGCTAGGGATTTCATTGGTGCTTTA AGGGCAGCTAATGAACGATCTGGATTGCCAGCACTGATAGCTGAAGTGAAGAAAGCTTCACCAAGTAGAGGTATCTTGAG AGAGGACTTCGATCCAGTTGAAATTGCTCAATCTTATGAGAAAGGTGGAGCAGCATGTCTAAGTGTTTTGACAGATGAGA AGTATTTTAAGGGAAGCTTTGAAAATCTTGAGGCGATAAGAAATGCTGGAGTGAAGTGCCCTTTGTTGTGCAAAGAATTC ATCGTAGATGCATGGCAACTCTACTATGCTCGAACTAAAGGTGCGGATGCAGTCCTTTTAATTGCTGCTGTTTTGCCTGA TCTTGACATCAAATACATGCTTAAGATATGCAGATTACTTGGACTGACCGCGCTTGTTGAGGTGCATGATGAGAGGGAAT TTGATCGTGTACTTGGAATTGAGGGGGTTGAACTTATTGGCATCAACAACCGTAATCTTGAAACATTTGAGGTGGATATC AGCATCACAAAAAAACTTCTTGAAGGAGAGCGAGGCGAAACAATCCGTGAGAAAGACATCATAATTGTAGGGGAATCTGG TCTGTTCACTCCTGAGGATATTGCCTATGTACAAGAAGCAGGTGTTAAAGCTGTTTTGGTTGGAGAGTCTCTTGTGAAAC AAAGTGATCCTGGGAAGGGAATCAGCAATCTCTTTGGCAAAGACATTTCTTTGGGTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0070800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MESLASLKAPFQALHLSSPRPRTWIPPTHLNTSRQNSFFSMSVRAQVGSDEGSPTIATSSEPIAEVLKVKEWEVGMFHNE VAASQGIRIRRRPPTGPPNHYVGPFQFRLQNEGNTPRNILEEIVWNKDKEVAYLKERKPLGMLNQALAGSPPARDFIGAL RAANERSGLPALIAEVKKASPSRGILREDFDPVEIAQSYEKGGAACLSVLTDEKYFKGSFENLEAIRNAGVKCPLLCKEF IVDAWQLYYARTKGADAVLLIAAVLPDLDIKYMLKICRLLGLTALVEVHDEREFDRVLGIEGVELIGINNRNLETFEVDI SITKKLLEGERGETIREKDIIIVGESGLFTPEDIAYVQEAGVKAVLVGESLVKQSDPGKGISNLFGKDISLG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22854:SF15
27 390 364 1.4E-196 –
PANTHER
PTHR22854
27 390 364 1.4E-196 –
Gene3D
G3DSA:3.20.20.70
112 390 279 1.3E-101
IPR013785
Hamap
MF_00134_B
118 386 269 34.988
IPR013798
Pfam
PF00218
120 383 264 9.5E-78
IPR013798
SUPERFAMILY
SSF51366
127 386 260 8.71E-79
IPR011060
CDD
cd00331
156 384 229 2.38678E-109
IPR013798
ProSitePatterns
PS00614
172 190 19 -
IPR001468

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004425
Molecular function Indole-3-glycerol-phosphate synthase activity Catalysis of the reaction: 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate = 1-(indol-3-yl)glycerol 3-phosphate + CO2 + H2O.
Subterm of
GO:0006568
Biological process Tryptophan metabolic process The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0070800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…