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LotjaGi1g1v0074300.1

Overview

Field Value
Gene ID LotjaGi1g1v0074300
Transcript ID LotjaGi1g1v0074300.1
Lotus japonicus genome version Gifu v1.2
Description Ferritin; TAIR: AT2G40300.1 ferritin 4; Swiss-Prot: sp|Q41709|FRI2_VIGUN Ferritin-2, chloroplastic; TrEMBL-Plants: tr|G7K283|G7K283_MEDTR Ferritin; Found in the gene: LotjaGi1g1v0074300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:10735477..10739089) extracted from Lotus japonicus Gifu genome v1.2.

TGGCCAACCATCAATAATAAGTTCCACTTATTTTTGTTCTAATGAATCAATAAGCTCCACTTAAATAAATTCAATTGGAC CAAAAAAGAATCCAAACTTTTCATTCCACAAATAGATAATCATACCCACCTAGACCTAGAACACGAGCACGCCACGCGCC CATCCCTAACACCAAATCTCAACCCTCCACGTATCACCCAATCCAACGGTCCTCATTCCACCAATCTCCCAATAAAATCT GACTCACACTGAAACTGAATCTCTCTACTCCGCCGTGAAATTCTCCTCCTCCGCCGTCTCGAATTCCGCTCCTCCGTCGA AATCCCTAACAAACAATCACGCACATCATCATGCTTCTCAAAGCCGCTGTTGCTCTTCCTTCTTCCACCTTCAACGCCGA CCGTTCGATTCCGTTTCACCGCCATAACGCGAACACCGTGGTGGTTTGCGCCGCCACCAAAGGCGCCAGCAACAACCGCG CCCTCACCGGCGTGCTGTTTGAGCCGTTTGAAGAGGTGAAGAAGGAGCTCGATCTCGTTCCTACCCTCCCTCAATCCTCC CTCGCTCGCCAGAAATACCATGACGATTCTGAAGCTGCGGTTAACGAACAAATCAAGTTCGTTCCTCTCTCTCTCTCTCT CTCAATTGGTTTCAACTTTCAATTGATTTTTGAATTTTTCTGATTTATTCAATATTTTTGCATTTTTTGGTTGTTTGTGC AGTGTGGAGTACAATGTCTCATACGTTTACCATGCGATGTATGCATACTTCGATAGGGACAATGTTGCGCTCAAGGGTCT TGCTAAGTAAGTAAAATTTTCAATGTTTTCAGGTTCTTTTACAGATTTTTCTTTCTAATTTTGTCTGTGGTGATTGAATG ATTGTTATTACGAGTAGAGTGGATGATATGGAGAAATGTTTCGCTCAAAGCTTAGATTTTTTTACTGATTTGTTGGTGTC AGTTTGTATGCAGCAAGTTAGGAAATCATGTTAGAAATGGTCCTGGTTTGATTTTGGTTGAGGTGTTACTCATGAATTGC TGGTTTTTAGGAGTTTAGTTAGTTTGAATTAATCTGAATTCTATTTTAGTAGTATAAAGGTTTTAACTTTTGGTAGTAGC AATAAAAAGATATTATTTTTCCTCTGCCCATTACCTCTGCAATATTATTTGGAGAATAACATTGGGTAATTTATATGATA GCCAAAAAAAGCATGCTTAGGGTCACATACGCTTCAATAAGATTAACCGAACACTTATTGAAAAATCAAATTCAGAAGAG TTTATAGGTAGCCACATCTTGCTTGGGTTTAACTTATGATTTATGAAATAAGCTCTCTTTCAAACAGATCCTGTAAGGTT TTTTTTTTTTTTTTACTTAATACATGATGTGCTATGTGAAAGAGTTTTGTTATCGTTGTTAGAGGGATTATTAATGATAG TGGTTTTCTGGTTTGTTTACAGCTTTTTTCAGAAATCAAGTGTAGAGGAAAGAGAGCATGCTGAGAAGTTGATGGAATAT CAGGTGTTTGGCTTTGGCTTGATTTAGTAGCATGCATATCTTTTTAATTTTATCCAATGATGTTGAATTCCGATTCTGAT TGTCTATGTTGCTGCAATTTTTTGTTTTCAGAACAAACGTGGTGGGAAAGTGAAGTTGCAGTCTATAGTGATGCCGCTTT CTGAGTTTGACCATGCAGATAAGGGAGATGCGCTGCATGGTTAGTGTCTATGCCCTCTTCTTTATTGAATATTTTCAGTT CAGATCGTGTGTTCTGTAATTGATAATAGAATTTGTTTATTGTTTCTGATTGTCCTGCATTTATCCGAATCTAAAGTATG ACATGTGTGCATTGTTTTATGGATCAAACTCCCGTGATTTCTGATTTTAAATTGGATATCGGTTATATGCTTGAATAAGG TTCTGGATACGTAGATGTTCTCTAATCATTTGCAGGACGGCCCTGTCTACTAATGAGATATTCTGTTCAATAAATGAAAT TGTGATTTCAAATTACTTTTATGTTGTTTATGTCTGCATTTGATTAGTTATTTGAAAGTACTTTCCACTGTTTATTCCAA AATGATAAACCCAAATGAGAGGTTATTATGTAACACATGATGTAGAAGTCAACTAGTACAAATGCTCCTCCCATCTTTAA GCTTTGCCTAATGAACTTCTCAACTGGATTCTCTAGTTATTAGAACTGAAAATTTTCCCCTTATTGCAGCAATGGAACTC GCTCTGTCATTGGAGAAGCTAGTGAGTGAAAAGCTCCTTAACTTGCACAATGTAAGACAAAGTTTGTTGGACTTAAGTTT TTATTGTATGTGCATTGTTTCATTGGTCTCGTTCATGTTGACATTGACTGATATTGTTTCATCTTGACAGGTTGCCTCAA AGACTGGTGACGTGCAGTTGGCAGACTTTGTGGAAAGTGAGTTTTTGGTTGAACAGGTATGTAAGAATTTGGTCTTGTGA CTAACAAACAATACATACATCCAGTCTAAGATTATACATAATTATGTGTTATGCATTGCATTTGGTGAAACAAAGCTTAA TCGACCCAAACTCTGCTCTTATGTTTTTTTGTTTCTTTATAGGTGGAAGCCATTAAAAAAATCTCAGAGTATGTTGCTCA GCTTAGGCTAGTGGGTAAAGGACATGGTAAGAATTATCCAATTTTACTTCATGCATCTAATTTTTCCTTACCTATGGTTT TTAATGAACAAAAAATTCTGAGCTAATTTCGTATCTTCATTGATGAACTTTCAGGTGTCTGGCACTTTGATCAGATGCTG CTCCATGAAGCAGCTTGATTACATTTTCAACCTTTCTAGTCATTGCATCTTGTTCATCTAGGTGACTGCTCTAGTGAGGA AGGAGCCTCAAGCTTGATGATTACATTTTCTTTCTTTCTAGTCATTGTATCTTGTTAATCTAGATGGAGTCTTTAGCTAG AATCTGGAACTAAGTTATGGCAGAACTAAATAAATGTGGACTGGTTTTGGTCACTGCTATTCTACTGTTTATTTACTGGC TGATCCGTGATTATTTGCTTAATGCTTATTGCTTTCACTTGACAGTTCGGACCAAGATTTAGTGCATGTTTGCAAACTAA ATTATGGTGCACAAAAATTAATGGAAGTTGCTTTTGTTAATGGTGTGATTTTAGCATCACGTTGAGCCTATTTAAATAAT ACTCCCCACATTACCCCTTTTGACATTTCGTTTAAGTATTTTTCTGGTGTTAAATGCCTTCCAGAATCTATGAAAAGGGC ATGCTAATACTGAGAAAAGTATATACCAAAGCCCTCAAATTCTACCTCCTCTTGCCAAAGCCTTGCTTTCTCTCACACAC CCCCTCTTAGGCTCTTACTTTCGTTTTCTTTGTCTCTTCACTCTGTTAATTTCTTCCGTTTAATTTTTGTCTCTTCACTA TTCTTTATCAATTTAATTCACTTGAAATATGTTTCACTCGCCTATCAACATCTTTCCGTTAGCAGCCCTCTAGCTAGGGA TGGCAATGGGTAGGGTCTGGGTAGGGTACTATAGTACCCATCCCCATACCCGCGTTTTAAAAAATTACCCGTACCCGTCC CCATACCCGCGTG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0074300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTTCTCAAAGCCGCTGTTGCTCTTCCTTCTTCCACCTTCAACGCCGACCGTTCGATTCCGTTTCACCGCCATAACGC GAACACCGTGGTGGTTTGCGCCGCCACCAAAGGCGCCAGCAACAACCGCGCCCTCACCGGCGTGCTGTTTGAGCCGTTTG AAGAGGTGAAGAAGGAGCTCGATCTCGTTCCTACCCTCCCTCAATCCTCCCTCGCTCGCCAGAAATACCATGACGATTCT GAAGCTGCGGTTAACGAACAAATCAATGTGGAGTACAATGTCTCATACGTTTACCATGCGATGTATGCATACTTCGATAG GGACAATGTTGCGCTCAAGGGTCTTGCTAACTTTTTTCAGAAATCAAGTGTAGAGGAAAGAGAGCATGCTGAGAAGTTGA TGGAATATCAGAACAAACGTGGTGGGAAAGTGAAGTTGCAGTCTATAGTGATGCCGCTTTCTGAGTTTGACCATGCAGAT AAGGGAGATGCGCTGCATGCAATGGAACTCGCTCTGTCATTGGAGAAGCTAGTGAGTGAAAAGCTCCTTAACTTGCACAA TGTTGCCTCAAAGACTGGTGACGTGCAGTTGGCAGACTTTGTGGAAAGTGAGTTTTTGGTTGAACAGGTGGAAGCCATTA AAAAAATCTCAGAGTATGTTGCTCAGCTTAGGCTAGTGGGTAAAGGACATGGTGTCTGGCACTTTGATCAGATGCTGCTC CATGAAGCAGCTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0074300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLLKAAVALPSSTFNADRSIPFHRHNANTVVVCAATKGASNNRALTGVLFEPFEEVKKELDLVPTLPQSSLARQKYHDDS EAAVNEQINVEYNVSYVYHAMYAYFDRDNVALKGLANFFQKSSVEEREHAEKLMEYQNKRGGKVKLQSIVMPLSEFDHAD KGDALHAMELALSLEKLVSEKLLNLHNVASKTGDVQLADFVESEFLVEQVEAIKKISEYVAQLRLVGKGHGVWHFDQMLL HEAA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11431:SF92
18 243 226 1.1E-132 –
PANTHER
PTHR11431
18 243 226 1.1E-132
IPR001519
Gene3D
G3DSA:1.20.1260.10
42 243 202 4.0E-86
IPR012347
SUPERFAMILY
SSF47240
68 240 173 7.68E-63
IPR009078
ProSiteProfiles
PS50905
74 227 154 41.484
IPR009040
CDD
cd01056
77 237 161 8.66073E-75 –
Pfam
PF00210
82 225 144 7.3E-33
IPR008331
ProSitePatterns
PS00204
194 214 21 -
IPR014034

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006826
Biological process Iron ion transport The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Subterm of
GO:0006879
Biological process Cellular iron ion homeostasis Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
Subterm of
GO:0008199
Molecular function Ferric iron binding Interacting selectively and non-covalently with ferric iron, Fe(III).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0074300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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