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IPR009078 is a Ferritin-like superfamily.
<p>Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms. It is a multisubunit protein with a hollow interior, which contains a mineral core of hydrated ferric oxide, thereby ensuring its solubility in an aqueous environment [[cite:PUB00013235]]. Each subunit consists of a closed, four-helical bundle with a left-handed twist and one crossover connection.</p> <p>This entry represents the ferritin-like superfamily. Proteins with this structure include ferritin and other ferritin-like proteins such as bacterioferritin (cytochrome b1) that binds haem between two subunits, non-haem ferritin, dodecameric ferritin homologue (DPS) that binds to and protects DNA, and the N-terminal domain of rubrerythrin that is found in many air-sensitive bacteria and archaea [[cite:PUB00013236]]. In addition, ribonucleotide reductase-like proteins show a similar structure to the ferritin-like fold; these di-iron carboxylate proteins constitute a diverse class of non-haem iron enzymes performing a multitude of redox reactions [[cite:PUB00013315]]. The superfamily also includes the alpha and beta subunits of methane monooxygenase hydrolase, delta 9-stearoyl-acyl carrier protein desaturase and manganese catalase.</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: ribonucleoside-diphosphate reductase small chain-like [Cicer arietinum] gi|502164888|ref|XP_004513312.1| | 14 | ||
| – | 14 | |||
| – | PREDICTED: ribonucleoside-diphosphate reductase small chain-like [Glycine max] gi|356558708|ref|XP_003547645.1| | 16 | ||
| – | Acyl-[acyl]-carrier-protein] gi|67633223|gb|AAY78547.1| | 16 | ||
| – | PREDICTED: acyl-[acyl]-carrier-protein] gi|502124091|ref|XP_004498381.1| | 11 | ||
| – | PREDICTED: ribonucleoside-diphosphate reductase small chain-like [Glycine max] gi|356571527|ref|XP_003553928.1| | 14 | ||
| – | PREDICTED: ribonucleoside-diphosphate reductase small chain-like [Cicer arietinum] gi|502164888|ref|XP_004513312.1| | 14 | ||
| – | Magnesium-protoporphyrin IX monomethyl ester [oxidative] gi|255565372|ref|XP_002523677.1| | 11 | ||
| – | PREDICTED: ribonucleoside-diphosphate reductase small chain-like [Glycine max] gi|356558708|ref|XP_003547645.1| | 9 | ||
| – | RecName: Full=Ferritin-2, chloroplastic; Flags: Precursorgi|2970654|gb|AAC06027.1| ferritin subunit cowpea2 precursor [Vigna unguiculata] gi|29839287|sp|Q41709.2|FRI2_VIGUN | 11 | ||
| – | Ferritin-3, chloroplastic [Glycine max] gi|351723695|ref|NP_001237032.1| | 19 | ||
| – | Uncharacterized protein TCM_003677 [Theobroma cacao] gi|508702305|gb|EOX94201.1| | 14 | ||
| – | Acyl-[acyl]-carrier-protein] gi|67633223|gb|AAY78547.1| | 16 | ||
| – | Ribonucleotide reductase small subunit [Glycine max] gi|351721787|ref|NP_001237733.1| | 17 | ||
| – | RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleoside-diphosphate reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunitgi|1044912|emb|CAA63194.1| ribonucleotide reductase R2 [Nicotiana tabacum] gi|1710401|sp|P49730.1|RIR2_TOBAC | 7 | ||
| – | Ferritin; TAIR: AT2G40300.1 ferritin 4; Swiss-Prot: sp|Q41709|FRI2_VIGUN Ferritin-2, chloroplastic; TrEMBL-Plants: tr|G7K283|G7K283_MEDTR Ferritin; Found in the gene: LotjaGi1g1v0074300 | 14 | ||
| – | Acyl-[acyl]-carrier-protein] desaturase; TAIR: AT1G43800.1 Plant stearoyl-acyl-carrier-protein desaturase family protein; Swiss-Prot: sp|Q84VY3|STAD6_ARATH Stearoyl-[acyl]-carrier-protein] 9-desaturase 6, chloroplastic; TrEMBL-Plants: tr|A0A072VEM1|A0A072VEM1_MEDTR Stearoyl-acyl-carrier desaturase; Found in the gene: LotjaGi1g1v0168700 | 11 | ||
| – | Ribonucleoside-diphosphate reductase; TAIR: AT3G27060.1 Ferritin/ribonucleotide reductase-like family protein; Swiss-Prot: sp|P49730|RIR2_TOBAC Ribonucleoside-diphosphate reductase small chain; TrEMBL-Plants: tr|A0A0R4J5J3|A0A0R4J5J3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0279100 | 15 | ||
| – | 3-oxoacyl-[acyl]-carrier] synthase-like protein; TAIR: AT5G04520.1 3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455); Swiss-Prot: sp|P43935|Y077_HAEIN Uncharacterized protein HI_0077; TrEMBL-Plants: tr|G7J6T5|G7J6T5_MEDTR 3-oxoacyl-[acyl]-carrier] synthase-like protein; Found in the gene: LotjaGi1g1v0282900 | 9 | ||
| – | Ribonucleoside-diphosphate reductase; TAIR: AT3G27060.1 Ferritin/ribonucleotide reductase-like family protein; Swiss-Prot: sp|P49730|RIR2_TOBAC Ribonucleoside-diphosphate reductase small chain; TrEMBL-Plants: tr|A0A0R4J5J3|A0A0R4J5J3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0376800 | 15 | ||
| – | Ribonucleoside-diphosphate reductase; TAIR: AT3G27060.1 Ferritin/ribonucleotide reductase-like family protein; Swiss-Prot: sp|P49730|RIR2_TOBAC Ribonucleoside-diphosphate reductase small chain; TrEMBL-Plants: tr|A0A0L9U8J2|A0A0L9U8J2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0606800 | 15 | ||
| – | Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase; TAIR: AT3G56940.1 dicarboxylate diiron protein, putative (Crd1); Swiss-Prot: sp|Q6SJV8|CRD1_GOSHI Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic; TrEMBL-Plants: tr|I3SCT7|I3SCT7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0654900 | 11 | ||
| – | Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase; TAIR: AT3G56940.1 dicarboxylate diiron protein, putative (Crd1); Swiss-Prot: sp|Q6SJV8|CRD1_GOSHI Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic; TrEMBL-Plants: tr|I3SCT7|I3SCT7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0654900 | 11 | ||
| – | Ferritin; TAIR: AT5G01600.1 ferretin 1; Swiss-Prot: sp|O65100|FRI3_VIGUN Ferritin-3, chloroplastic; TrEMBL-Plants: tr|I3SV41|I3SV41_LOTJA Ferritin; Found in the gene: LotjaGi3g1v0197600 | 19 | ||
| – | DUF455 family protein; TAIR: AT1G06240.1 diiron containing four-helix bundle family ferritin protein, putative (Protein of unknown function DUF455); Swiss-Prot: sp|P43935|Y077_HAEIN Uncharacterized protein HI_0077; TrEMBL-Plants: tr|I1LUL2|I1LUL2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0449600 | 14 | ||
| – | Acyl-[acyl]-carrier-protein] desaturase; TAIR: AT2G43710.1 Plant stearoyl-acyl-carrier-protein desaturase family protein; Swiss-Prot: sp|Q42807|STAD_SOYBN Stearoyl-[acyl]-carrier-protein] 9-desaturase, chloroplastic; TrEMBL-Plants: tr|Q4PZD4|Q4PZD4_LOTJA Acyl-[acyl]-carrier-protein] desaturase; Found in the gene: LotjaGi4g1v0068200 | 17 | ||
| – | Acyl-[acyl]-carrier-protein] desaturase; TAIR: AT2G43710.1 Plant stearoyl-acyl-carrier-protein desaturase family protein; Swiss-Prot: sp|Q42807|STAD_SOYBN Stearoyl-[acyl]-carrier-protein] 9-desaturase, chloroplastic; TrEMBL-Plants: tr|Q4PZD4|Q4PZD4_LOTJA Acyl-[acyl]-carrier-protein] desaturase; Found in the gene: LotjaGi4g1v0068200 | 12 | ||
| – | Acyl-[acyl]-carrier-protein] desaturase; TAIR: AT2G43710.2 Plant stearoyl-acyl-carrier-protein desaturase family protein; Swiss-Prot: sp|Q42807|STAD_SOYBN Stearoyl-[acyl]-carrier-protein] 9-desaturase, chloroplastic; TrEMBL-Plants: tr|Q4PZD4|Q4PZD4_LOTJA Acyl-[acyl]-carrier-protein] desaturase; Found in the gene: LotjaGi4g1v0068200 | 12 | ||
| – | Acyl-[acyl]-carrier-protein] desaturase; TAIR: AT2G43710.1 Plant stearoyl-acyl-carrier-protein desaturase family protein; Swiss-Prot: sp|Q42807|STAD_SOYBN Stearoyl-[acyl]-carrier-protein] 9-desaturase, chloroplastic; TrEMBL-Plants: tr|Q4PZD4|Q4PZD4_LOTJA Acyl-[acyl]-carrier-protein] desaturase; Found in the gene: LotjaGi4g1v0068200 | 18 | ||
| – | Acyl-[acyl]-carrier-protein] desaturase; TAIR: AT2G43710.1 Plant stearoyl-acyl-carrier-protein desaturase family protein; Swiss-Prot: sp|Q42807|STAD_SOYBN Stearoyl-[acyl]-carrier-protein] 9-desaturase, chloroplastic; TrEMBL-Plants: tr|Q4PZD4|Q4PZD4_LOTJA Acyl-[acyl]-carrier-protein] desaturase; Found in the gene: LotjaGi4g1v0068200 | 18 | ||
| – | Ribonucleoside-diphosphate reductase small chain; TAIR: AT3G23580.1 ribonucleotide reductase 2A; Swiss-Prot: sp|P50651|RIR2A_ARATH Ribonucleoside-diphosphate reductase small chain A; TrEMBL-Plants: tr|I3SPM1|I3SPM1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0351000 | 17 | ||
| – | Ferritin; TAIR: AT2G40300.1 ferritin 4; Swiss-Prot: sp|Q948P6|FRI3_SOYBN Ferritin-3, chloroplastic; TrEMBL-Plants: tr|I1MYZ8|I1MYZ8_SOYBN Ferritin; Found in the gene: LotjaGi6g1v0079000 | 20 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd01056 | CDD | 1 | 3.13 |