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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR009078
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We have found 32 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.741s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0056169.1
n.a. PREDICTED: ribonucleoside-diphosphate reductase small chain-like [Cicer arietinum] gi|502164888|ref|XP_004513312.1| chr0 18238878 18240554 +
2 domain predictions
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Lj0g3v0328789.1
n.a. n.a. chr0 171893937 171895130 +
2 domain predictions
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Lj0g3v0328799.1
n.a. PREDICTED: ribonucleoside-diphosphate reductase small chain-like [Glycine max] gi|356558708|ref|XP_003547645.1| chr0 171893937 171895309 -
2 domain predictions
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Lj0g3v0353059.1
n.a. acyl-[acyl]-carrier-protein] gi|67633223|gb|AAY78547.1| chr0 185775528 185778593 +
2 domain predictions
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Lj1g3v0264200.1
n.a. PREDICTED: acyl-[acyl]-carrier-protein] gi|502124091|ref|XP_004498381.1| chr1 2809187 2811444 -
2 domain predictions
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Lj1g3v3631770.1
n.a. PREDICTED: ribonucleoside-diphosphate reductase small chain-like [Glycine max] gi|356571527|ref|XP_003553928.1| chr1 41830790 41832368 +
2 domain predictions
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Lj1g3v3835520.1
n.a. PREDICTED: ribonucleoside-diphosphate reductase small chain-like [Cicer arietinum] gi|502164888|ref|XP_004513312.1| chr1 43772378 43773105 +
2 domain predictions
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Lj1g3v4058630.1
n.a. Magnesium-protoporphyrin IX monomethyl ester [oxidative] gi|255565372|ref|XP_002523677.1| chr1 47949117 47951865 -
2 domain predictions
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Lj1g3v4361110.1
n.a. PREDICTED: ribonucleoside-diphosphate reductase small chain-like [Glycine max] gi|356558708|ref|XP_003547645.1| chr1 51187691 51188906 +
2 domain predictions
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Lj2g3v2806680.1
n.a. RecName: Full=Ferritin-2, chloroplastic; Flags: Precursorgi|2970654|gb|AAC06027.1| ferritin subunit cowpea2 precursor [Vigna unguiculata] gi|29839287|sp|Q41709.2|FRI2_VIGUN chr2 36846399 36849303 -
2 domain predictions
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Lj2g3v2817760.1
n.a. ferritin-3, chloroplastic [Glycine max] gi|351723695|ref|NP_001237032.1| chr2 36872621 36875099 -
2 domain predictions
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Lj3g3v2848830.1
n.a. Uncharacterized protein TCM_003677 [Theobroma cacao] gi|508702305|gb|EOX94201.1| chr3 35060858 35066317 +
2 domain predictions
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Lj4g3v0510250.1
n.a. acyl-[acyl]-carrier-protein] gi|67633223|gb|AAY78547.1| chr4 8718259 8721640 -
2 domain predictions
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Lj4g3v2379450.1
n.a. ribonucleotide reductase small subunit [Glycine max] gi|351721787|ref|NP_001237733.1| chr4 33011656 33015822 +
2 domain predictions
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Lj5g3v0642740.1
n.a. RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleoside-diphosphate reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunitgi|1044912|emb|CAA63194.1| ribonucleotide reductase R2 [Nicotiana tabacum] gi|1710401|sp|P49730.1|RIR2_TOBAC chr5 8882960 8883232 +
2 domain predictions
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LotjaGi1g1v0074300.1
n.a. Ferritin; TAIR: AT2G40300.1 ferritin 4; Swiss-Prot: sp|Q41709|FRI2_VIGUN Ferritin-2, chloroplastic; TrEMBL-Plants: tr|G7K283|G7K283_MEDTR Ferritin; Found in the gene: LotjaGi1g1v0074300 LjG1.1_chr1 10735477 10739089 +
2 domain predictions
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LotjaGi1g1v0168700.1
n.a. Acyl-[acyl]-carrier-protein] desaturase; TAIR: AT1G43800.1 Plant stearoyl-acyl-carrier-protein desaturase family protein; Swiss-Prot: sp|Q84VY3|STAD6_ARATH Stearoyl-[acyl]-carrier-protein] 9-desaturase 6, chloroplastic; TrEMBL-Plants: tr|A0A072VEM1|A0A072VEM1_MEDTR Stearoyl-acyl-carrier desaturase; Found in the gene: LotjaGi1g1v0168700 LjG1.1_chr1 32075927 32078529 -
2 domain predictions
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LotjaGi1g1v0279100.1
n.a. Ribonucleoside-diphosphate reductase; TAIR: AT3G27060.1 Ferritin/ribonucleotide reductase-like family protein; Swiss-Prot: sp|P49730|RIR2_TOBAC Ribonucleoside-diphosphate reductase small chain; TrEMBL-Plants: tr|A0A0R4J5J3|A0A0R4J5J3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0279100 LjG1.1_chr1 68187348 68188340 -
2 domain predictions
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LotjaGi1g1v0282900.1
n.a. 3-oxoacyl-[acyl]-carrier] synthase-like protein; TAIR: AT5G04520.1 3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455); Swiss-Prot: sp|P43935|Y077_HAEIN Uncharacterized protein HI_0077; TrEMBL-Plants: tr|G7J6T5|G7J6T5_MEDTR 3-oxoacyl-[acyl]-carrier] synthase-like protein; Found in the gene: LotjaGi1g1v0282900 LjG1.1_chr1 68963703 68968776 -
2 domain predictions
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LotjaGi1g1v0376800.1
n.a. Ribonucleoside-diphosphate reductase; TAIR: AT3G27060.1 Ferritin/ribonucleotide reductase-like family protein; Swiss-Prot: sp|P49730|RIR2_TOBAC Ribonucleoside-diphosphate reductase small chain; TrEMBL-Plants: tr|A0A0R4J5J3|A0A0R4J5J3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0376800 LjG1.1_chr1 85599058 85600627 -
2 domain predictions
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LotjaGi1g1v0606800.1
n.a. Ribonucleoside-diphosphate reductase; TAIR: AT3G27060.1 Ferritin/ribonucleotide reductase-like family protein; Swiss-Prot: sp|P49730|RIR2_TOBAC Ribonucleoside-diphosphate reductase small chain; TrEMBL-Plants: tr|A0A0L9U8J2|A0A0L9U8J2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0606800 LjG1.1_chr1 115169534 115170523 +
2 domain predictions
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LotjaGi1g1v0654900.1
n.a. Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase; TAIR: AT3G56940.1 dicarboxylate diiron protein, putative (Crd1); Swiss-Prot: sp|Q6SJV8|CRD1_GOSHI Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic; TrEMBL-Plants: tr|I3SCT7|I3SCT7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0654900 LjG1.1_chr1 121426579 121433826 -
2 domain predictions
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LotjaGi1g1v0654900.2
n.a. Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase; TAIR: AT3G56940.1 dicarboxylate diiron protein, putative (Crd1); Swiss-Prot: sp|Q6SJV8|CRD1_GOSHI Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic; TrEMBL-Plants: tr|I3SCT7|I3SCT7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0654900 LjG1.1_chr1 121431101 121433735 -
2 domain predictions
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LotjaGi3g1v0197600.1
n.a. Ferritin; TAIR: AT5G01600.1 ferretin 1; Swiss-Prot: sp|O65100|FRI3_VIGUN Ferritin-3, chloroplastic; TrEMBL-Plants: tr|I3SV41|I3SV41_LOTJA Ferritin; Found in the gene: LotjaGi3g1v0197600 LjG1.1_chr3 28953939 28957552 -
2 domain predictions
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LotjaGi3g1v0449600.1
n.a. DUF455 family protein; TAIR: AT1G06240.1 diiron containing four-helix bundle family ferritin protein, putative (Protein of unknown function DUF455); Swiss-Prot: sp|P43935|Y077_HAEIN Uncharacterized protein HI_0077; TrEMBL-Plants: tr|I1LUL2|I1LUL2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0449600 LjG1.1_chr3 86306722 86312617 +
2 domain predictions
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LotjaGi4g1v0068200.1
n.a. Acyl-[acyl]-carrier-protein] desaturase; TAIR: AT2G43710.1 Plant stearoyl-acyl-carrier-protein desaturase family protein; Swiss-Prot: sp|Q42807|STAD_SOYBN Stearoyl-[acyl]-carrier-protein] 9-desaturase, chloroplastic; TrEMBL-Plants: tr|Q4PZD4|Q4PZD4_LOTJA Acyl-[acyl]-carrier-protein] desaturase; Found in the gene: LotjaGi4g1v0068200 LjG1.1_chr4 8552683 8556807 -
2 domain predictions
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LotjaGi4g1v0068200.2
n.a. Acyl-[acyl]-carrier-protein] desaturase; TAIR: AT2G43710.1 Plant stearoyl-acyl-carrier-protein desaturase family protein; Swiss-Prot: sp|Q42807|STAD_SOYBN Stearoyl-[acyl]-carrier-protein] 9-desaturase, chloroplastic; TrEMBL-Plants: tr|Q4PZD4|Q4PZD4_LOTJA Acyl-[acyl]-carrier-protein] desaturase; Found in the gene: LotjaGi4g1v0068200 LjG1.1_chr4 8553638 8555241 -
2 domain predictions
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LotjaGi4g1v0068200.3
n.a. Acyl-[acyl]-carrier-protein] desaturase; TAIR: AT2G43710.2 Plant stearoyl-acyl-carrier-protein desaturase family protein; Swiss-Prot: sp|Q42807|STAD_SOYBN Stearoyl-[acyl]-carrier-protein] 9-desaturase, chloroplastic; TrEMBL-Plants: tr|Q4PZD4|Q4PZD4_LOTJA Acyl-[acyl]-carrier-protein] desaturase; Found in the gene: LotjaGi4g1v0068200 LjG1.1_chr4 8553638 8555386 -
2 domain predictions
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LotjaGi4g1v0068200.4
n.a. Acyl-[acyl]-carrier-protein] desaturase; TAIR: AT2G43710.1 Plant stearoyl-acyl-carrier-protein desaturase family protein; Swiss-Prot: sp|Q42807|STAD_SOYBN Stearoyl-[acyl]-carrier-protein] 9-desaturase, chloroplastic; TrEMBL-Plants: tr|Q4PZD4|Q4PZD4_LOTJA Acyl-[acyl]-carrier-protein] desaturase; Found in the gene: LotjaGi4g1v0068200 LjG1.1_chr4 8553638 8556552 -
2 domain predictions
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LotjaGi4g1v0068200.5
n.a. Acyl-[acyl]-carrier-protein] desaturase; TAIR: AT2G43710.1 Plant stearoyl-acyl-carrier-protein desaturase family protein; Swiss-Prot: sp|Q42807|STAD_SOYBN Stearoyl-[acyl]-carrier-protein] 9-desaturase, chloroplastic; TrEMBL-Plants: tr|Q4PZD4|Q4PZD4_LOTJA Acyl-[acyl]-carrier-protein] desaturase; Found in the gene: LotjaGi4g1v0068200 LjG1.1_chr4 8553638 8556803 -
2 domain predictions
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LotjaGi4g1v0351000.1
n.a. Ribonucleoside-diphosphate reductase small chain; TAIR: AT3G23580.1 ribonucleotide reductase 2A; Swiss-Prot: sp|P50651|RIR2A_ARATH Ribonucleoside-diphosphate reductase small chain A; TrEMBL-Plants: tr|I3SPM1|I3SPM1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0351000 LjG1.1_chr4 72967023 72971247 +
2 domain predictions
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LotjaGi6g1v0079000.1
n.a. Ferritin; TAIR: AT2G40300.1 ferritin 4; Swiss-Prot: sp|Q948P6|FRI3_SOYBN Ferritin-3, chloroplastic; TrEMBL-Plants: tr|I1MYZ8|I1MYZ8_SOYBN Ferritin; Found in the gene: LotjaGi6g1v0079000 LjG1.1_chr6 15020549 15023794 +
2 domain predictions
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