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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0080000 |
Transcript ID | LotjaGi1g1v0080000.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Aquaporin; TAIR: AT4G00430.1 plasma membrane intrinsic protein 1;4; Swiss-Prot: sp|P25794|PIP2_PEA Probable aquaporin PIP-type 7a; TrEMBL-Plants: tr|Q946J9|Q946J9_MEDTR Aquaporin protein PIP1;1; Found in the gene: LotjaGi1g1v0080000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11545327..11548376) extracted from Lotus japonicus Gifu genome v1.2.
GGTGAGGTAATACATGTTCCATTTTTCCTGAAAACTACAGTAATACAACGTTCCAGTGATGCGCAGAACATGGACGGTAA TGATAGGAGTGGTTAGAATCACACCAGCTAGGACACAACGTTCATCAGTGACCAGTCCCTATCATCACAGCATTAATATA TTCAACATATTACGCCATGTGGGTCCTACCACGCTCACCTCCAGTTCCATTAACCACAACATATTCTCATTATAAATCCG CACCTTACCCACTCTCTCACACCACTCCACTGACACACACTACTACACACCAATCATTCATCACCACCATCATCAGAAGA ACCAGAACAACCACTAACCATCGATGGAGGCGAAGGAGCAGGATGTGTCCTTGGGTGCGAACAAGTACCCGGAGAGGCAA CCCATCGGCATAGCAGCTCAGAGCCAAGATGATGGCAAGGACTACCAGGAGCCACCACCTGCGCCGCTGTTTGAGCCGTC GGAGCTCACCTCATGGTCCTTCTACAGAGCCGGTATTGCCGAGTTTGTTGCCACCTTTCTGTTCCTCTACATCACCGTCT TGACCGTCATGGGTGTCAGCGGTGCCGATAGCAAGTGCAAAACTGTTGGTATTCAAGGGATTGCTTGGGCTTTCGGTGGC ATGATCTTCGCTCTCGTTTACTGCACCGCCGGAATCTCAGGTCAAAATTTCACAAACTTCACACAACAAATTATTTGTTT TAAGTTGTGAACTAAATTTTTCTTGGTAGATTATGATTAATTTGCAGAGAAACTATTTTATGTTGTGAACTAAATTTTTA ATGAAACTTTATACACAGAAATATTTTAATGTGATCAAATTTTTCATGGTCTTTGCTAAATGAAACTTTGTACAGAAATA TTTTAATTTGTGAACTAAATTTTTGTTAGTCTATGTTAACTGTAAGTTTGTGCTCTTGTACTTAAATTGAATTGCACACA AATCATTTTAATTTGCGAACTAAATTTTTCTGGTTTCTAAACTGGGTGTTTTGATGTGTGTGTGATACAGGAGGTCACAT AAACCCGGCTGTGACTTTTGGGCTGTTTTTGGCGAGGAAGTTGTCCTTGACAAGGGCTATTTTCTACATCGTGATGCAGT GCCTGGGTGCTATTGTTGGCGCCGGCGTGGTGAAAGGTTTTGAGGGAAAGACCAAGTACGGAACTCTAGGAGGTGGTGCT AACTTTGTTGCCCCTGGTTACACCAAGGGTGATGGTCTCGGTGCTGAGATTGTTGGCACCTTTGTTCTTGTTTACACCGT CTTCTCCGCCACCGATGCTAAGCGTAGCGCCAGAGACTCTCACGTCCCCGTAAGTACTCTCACAAGGCCGAGAAACTCAC ATTGATTAGAGATATGACCGAATAAGTGTTTATATAGGGTAAAGCGACTCTCTCTCGGTTTTAACCTAGCTATTGTTATT TTGATCAGATTTTGGCACCTCTGCCTATTGGGTTCGCTGTGTTCTTGGTGCATTTGGCTACCATCCCCATTACAGGAACT GGTATCAACCCTGCTAGGAGTCTCGGTGCTGCCATTATCTTCAACAAGGACCGTGGCTGGGATGATCACGTACGTTGATA ATTTTTTTGGTTTTTAAGAGAATGAATCTGAACCGTTGGATCTCTGATTGATGCTAATTGATTTTTTTTCTTGTGCAGTG GATCTTCTGGGTGGGACCATTCATCGGAGCTGCTCTTGCAGCTATCTACCACGTGGTTGTTATCCGAGCCATTCCCTTCA AGTCCAAGTGATTGAATCAAACGGTTCATGATCAGTAAATGTTTGGGAGAATCATAATCAAAGCCATGTTTGTGGGTTTC ATTTCATCATCAACATCATGATGTTCTGTTTATCTTTTTTTTTTTGGGTTCTTCTTTTAATTTCCAAAGTCTTTGTAATT TGTATGTAAAGATGATTATCTATGCAATGTAATATTATGATGATTATTATCTATTTTTAGGTGGGTCATGTTTTCGGGTC ATGGGTCAGTAATCCTTTGCTTTTTAAGTTGGAAGAGGACCCAGCCCATGTGTGATTTACGGCTGTGATTGTGTATTTTG CCAAATCAAAAATAACAGCGAGTCATTTCTGGATCCTTCTTTTCTTTTTTCAGTTTTTTTTTTCTTTCTTGTCATTAAAT CTCTCACTGGCCCCATCTCTTGTCCTTGCTGTAATTCTTGTCGTTTTATCTAAGAATATATGCCAAGGTTGGATTTCTCT ATCCACGCTTGTGATCGTTATCACTTGTTATGGATGAGGTGTGTGGGTTGAGGGGTTGATGTGACCTACTACCCTACCCT GTTCTGGGACCAACCCTTCATCAATAATGCACATCATGTGAGGGACTAAAAAATATTTTTTCACTAGCACCATAGCCTTG AGAAAAAAGTACACACTAGGTTTGGTTCCTTGCTTTATCAGATAAGGACAAGCTTGATTATTTATCGACAAAGATTGCTA CTTCCTACTAATTACTTCCGTGAAATCCTTCAAGAAGTGGGCAAGTGGCAATAATTCATTGAGTGGGGTGACAATTAACA AATTGTGGGTGAGCCGTGAGCCATAAGAAAACATGAATTGTATTATACGACAATTTTTTGGTATTTGCTGGTATTCATCA AATGGCAACGAATATAAGTTATTTCGGCAATTCTGCCTTAGAGCATCTCCATTCTGCCTTAGAGCATCTCCAATGGTGAG ATCTTATTTTTGGACTTAATTCACTTTTTGTGGGTCCAGATTGCCACATAGGATTTAAGACACTCATAAGGTCCCTATGC ACATTTCACTCTAATGGTTGAGATCTTATTTTACTTTTGACTGGACCCACAGTACTCAATATATTTATATTATTTATTTC CCTCTCTATTTTTCACTTTGGTTCTTGTATTGAAGAAGAGAGAGAAAAAAATATTATTTTATTTAAGATCCCACATTTGA GAGTACATGAGCTAAGACACGGATCTTAGCAAAAACTAAGATCTCATGCCACGTAGAATAGCTCCAATGGTGAGATCTAA TAAGATTCGG
CDS sequence (LotjaGi1g1v0080000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCGAAGGAGCAGGATGTGTCCTTGGGTGCGAACAAGTACCCGGAGAGGCAACCCATCGGCATAGCAGCTCAGAG CCAAGATGATGGCAAGGACTACCAGGAGCCACCACCTGCGCCGCTGTTTGAGCCGTCGGAGCTCACCTCATGGTCCTTCT ACAGAGCCGGTATTGCCGAGTTTGTTGCCACCTTTCTGTTCCTCTACATCACCGTCTTGACCGTCATGGGTGTCAGCGGT GCCGATAGCAAGTGCAAAACTGTTGGTATTCAAGGGATTGCTTGGGCTTTCGGTGGCATGATCTTCGCTCTCGTTTACTG CACCGCCGGAATCTCAGGAGGTCACATAAACCCGGCTGTGACTTTTGGGCTGTTTTTGGCGAGGAAGTTGTCCTTGACAA GGGCTATTTTCTACATCGTGATGCAGTGCCTGGGTGCTATTGTTGGCGCCGGCGTGGTGAAAGGTTTTGAGGGAAAGACC AAGTACGGAACTCTAGGAGGTGGTGCTAACTTTGTTGCCCCTGGTTACACCAAGGGTGATGGTCTCGGTGCTGAGATTGT TGGCACCTTTGTTCTTGTTTACACCGTCTTCTCCGCCACCGATGCTAAGCGTAGCGCCAGAGACTCTCACGTCCCCATTT TGGCACCTCTGCCTATTGGGTTCGCTGTGTTCTTGGTGCATTTGGCTACCATCCCCATTACAGGAACTGGTATCAACCCT GCTAGGAGTCTCGGTGCTGCCATTATCTTCAACAAGGACCGTGGCTGGGATGATCACTGGATCTTCTGGGTGGGACCATT CATCGGAGCTGCTCTTGCAGCTATCTACCACGTGGTTGTTATCCGAGCCATTCCCTTCAAGTCCAAGTGA
Protein sequence (LotjaGi1g1v0080000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAKEQDVSLGANKYPERQPIGIAAQSQDDGKDYQEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITVLTVMGVSG ADSKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAIVGAGVVKGFEGKT KYGTLGGGANFVAPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINP ARSLGAAIIFNKDRGWDDHWIFWVGPFIGAALAAIYHVVVIRAIPFKSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 288 | 288 | 2.1E-188 | ||
MobiDBLite | 1 | 39 | 39 | - | – | |
Phobius | 1 | 60 | 60 | - | – | |
PANTHER | 1 | 288 | 288 | 2.1E-188 | – | |
Gene3D | 40 | 289 | 250 | 4.0E-94 | ||
SUPERFAMILY | 47 | 281 | 235 | 3.01E-64 | ||
Pfam | 47 | 277 | 231 | 1.8E-81 | ||
CDD | 55 | 280 | 226 | 2.52227E-77 | ||
PRINTS | 55 | 74 | 20 | 1.1E-69 | ||
TMHMM | 56 | 78 | 23 | - | – | |
TIGRFAM | 59 | 276 | 218 | 4.2E-66 | ||
Phobius | 61 | 81 | 21 | - | – | |
Phobius | 82 | 92 | 11 | - | – | |
Phobius | 93 | 115 | 23 | - | – | |
TMHMM | 93 | 115 | 23 | - | – | |
PRINTS | 97 | 121 | 25 | 1.1E-69 | ||
ProSitePatterns | 115 | 123 | 9 | - | ||
Phobius | 116 | 134 | 19 | - | – | |
PRINTS | 134 | 153 | 20 | 1.1E-69 | ||
Phobius | 135 | 153 | 19 | - | – | |
TMHMM | 136 | 153 | 18 | - | – | |
Phobius | 154 | 212 | 59 | - | – | |
TMHMM | 181 | 198 | 18 | - | – | |
PRINTS | 184 | 202 | 19 | 1.1E-69 | ||
TMHMM | 211 | 233 | 23 | - | – | |
Phobius | 213 | 233 | 21 | - | – | |
PRINTS | 220 | 242 | 23 | 1.1E-69 | ||
Phobius | 234 | 259 | 26 | - | – | |
TMHMM | 259 | 281 | 23 | - | – | |
PRINTS | 260 | 280 | 21 | 1.1E-69 | ||
Phobius | 260 | 284 | 25 | - | – | |
Phobius | 285 | 289 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0080000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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