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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0080000 |
| Transcript ID | LotjaGi1g1v0080000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin; TAIR: AT4G00430.1 plasma membrane intrinsic protein 1;4; Swiss-Prot: sp|P25794|PIP2_PEA Probable aquaporin PIP-type 7a; TrEMBL-Plants: tr|Q946J9|Q946J9_MEDTR Aquaporin protein PIP1;1; Found in the gene: LotjaGi1g1v0080000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11545670..11546977) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGGCGAAGGAGCAGGATGTGTCCTTGGGTGCGAACAAGTACCCGGAGAGGCAACCCATCGGCATAGCAGCTCAGAG CCAAGATGATGGCAAGGACTACCAGGAGCCACCACCTGCGCCGCTGTTTGAGCCGTCGGAGCTCACCTCATGGTCCTTCT ACAGAGCCGGTATTGCCGAGTTTGTTGCCACCTTTCTGTTCCTCTACATCACCGTCTTGACCGTCATGGGTGTCAGCGGT GCCGATAGCAAGTGCAAAACTGTTGGTATTCAAGGGATTGCTTGGGCTTTCGGTGGCATGATCTTCGCTCTCGTTTACTG CACCGCCGGAATCTCAGGTCAAAATTTCACAAACTTCACACAACAAATTATTTGTTTTAAGTTGTGAACTAAATTTTTCT TGGTAGATTATGATTAATTTGCAGAGAAACTATTTTATGTTGTGAACTAAATTTTTAATGAAACTTTATACACAGAAATA TTTTAATGTGATCAAATTTTTCATGGTCTTTGCTAAATGAAACTTTGTACAGAAATATTTTAATTTGTGAACTAAATTTT TGTTAGTCTATGTTAACTGTAAGTTTGTGCTCTTGTACTTAAATTGAATTGCACACAAATCATTTTAATTTGCGAACTAA ATTTTTCTGGTTTCTAAACTGGGTGTTTTGATGTGTGTGTGATACAGGAGGTCACATAAACCCGGCTGTGACTTTTGGGC TGTTTTTGGCGAGGAAGTTGTCCTTGACAAGGGCTATTTTCTACATCGTGATGCAGTGCCTGGGTGCTATTGTTGGCGCC GGCGTGGTGAAAGGTTTTGAGGGAAAGACCAAGTACGGAACTCTAGGAGGTGGTGCTAACTTTGTTGCCCCTGGTTACAC CAAGGGTGATGGTCTCGGTGCTGAGATTGTTGGCACCTTTGTTCTTGTTTACACCGTCTTCTCCGCCACCGATGCTAAGC GTAGCGCCAGAGACTCTCACGTCCCCGTAAGTACTCTCACAAGGCCGAGAAACTCACATTGATTAGAGATATGACCGAAT AAGTGTTTATATAGGGTAAAGCGACTCTCTCTCGGTTTTAACCTAGCTATTGTTATTTTGATCAGATTTTGGCACCTCTG CCTATTGGGTTCGCTGTGTTCTTGGTGCATTTGGCTACCATCCCCATTACAGGAACTGGTATCAACCCTGCTAGGAGTCT CGGTGCTGCCATTATCTTCAACAAGGACCGTGGCTGGGATGATCACGTACGTTGATAATTTTTTTGGTTTTTAAGAGAAT GAATCTGAACCGTTGGATCTCTGATTGA
CDS sequence (LotjaGi1g1v0080000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCGAAGGAGCAGGATGTGTCCTTGGGTGCGAACAAGTACCCGGAGAGGCAACCCATCGGCATAGCAGCTCAGAG CCAAGATGATGGCAAGGACTACCAGGAGCCACCACCTGCGCCGCTGTTTGAGCCGTCGGAGCTCACCTCATGGTCCTTCT ACAGAGCCGGTATTGCCGAGTTTGTTGCCACCTTTCTGTTCCTCTACATCACCGTCTTGACCGTCATGGGTGTCAGCGGT GCCGATAGCAAGTGCAAAACTGTTGGTATTCAAGGGATTGCTTGGGCTTTCGGTGGCATGATCTTCGCTCTCGTTTACTG CACCGCCGGAATCTCAGGAGGTCACATAAACCCGGCTGTGACTTTTGGGCTGTTTTTGGCGAGGAAGTTGTCCTTGACAA GGGCTATTTTCTACATCGTGATGCAGTGCCTGGGTGCTATTGTTGGCGCCGGCGTGGTGAAAGGTTTTGAGGGAAAGACC AAGTACGGAACTCTAGGAGGTGGTGCTAACTTTGTTGCCCCTGGTTACACCAAGGGTGATGGTCTCGGTGCTGAGATTGT TGGCACCTTTGTTCTTGTTTACACCGTCTTCTCCGCCACCGATGCTAAGCGTAGCGCCAGAGACTCTCACGTCCCCATTT TGGCACCTCTGCCTATTGGGTTCGCTGTGTTCTTGGTGCATTTGGCTACCATCCCCATTACAGGAACTGGTATCAACCCT GCTAGGAGTCTCGGTGCTGCCATTATCTTCAACAAGGACCGTGGCTGGGATGATCACGTACGTTGA
Protein sequence (LotjaGi1g1v0080000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAKEQDVSLGANKYPERQPIGIAAQSQDDGKDYQEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITVLTVMGVSG ADSKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAIVGAGVVKGFEGKT KYGTLGGGANFVAPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINP ARSLGAAIIFNKDRGWDDHVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 259 | 259 | 2.8E-168 | ||
| PANTHER | 1 | 259 | 259 | 2.8E-168 | – | |
| Phobius | 1 | 60 | 60 | - | – | |
| MobiDBLite | 1 | 39 | 39 | - | – | |
| Gene3D | 40 | 260 | 221 | 4.8E-82 | ||
| SUPERFAMILY | 47 | 256 | 210 | 9.42E-55 | ||
| Pfam | 47 | 259 | 213 | 1.0E-70 | ||
| PRINTS | 55 | 74 | 20 | 1.6E-58 | ||
| CDD | 55 | 259 | 205 | 5.37191E-68 | ||
| TMHMM | 56 | 78 | 23 | - | – | |
| TIGRFAM | 59 | 258 | 200 | 2.9E-57 | ||
| Phobius | 61 | 81 | 21 | - | – | |
| Phobius | 82 | 92 | 11 | - | – | |
| Phobius | 93 | 115 | 23 | - | – | |
| TMHMM | 93 | 115 | 23 | - | – | |
| PRINTS | 97 | 121 | 25 | 1.6E-58 | ||
| ProSitePatterns | 115 | 123 | 9 | - | ||
| Phobius | 116 | 134 | 19 | - | – | |
| PRINTS | 134 | 153 | 20 | 1.6E-58 | ||
| Phobius | 135 | 153 | 19 | - | – | |
| TMHMM | 136 | 153 | 18 | - | – | |
| Phobius | 154 | 212 | 59 | - | – | |
| TMHMM | 181 | 198 | 18 | - | – | |
| PRINTS | 184 | 202 | 19 | 1.6E-58 | ||
| TMHMM | 211 | 233 | 23 | - | – | |
| Phobius | 213 | 233 | 21 | - | – | |
| PRINTS | 220 | 242 | 23 | 1.6E-58 | ||
| Phobius | 234 | 261 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0080000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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