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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0081600 |
| Transcript ID | LotjaGi1g1v0081600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G16860.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860; TrEMBL-Plants: tr|G7I3D9|G7I3D9_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi1g1v0081600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11789793..11792809) extracted from Lotus japonicus Gifu genome v1.2.
TTTATGTTCAGATATTTCTATTCTTATAGTCATTTGTAATTTTTAATGTACTTAAAGTTGCATTTTGTTACTCCAAATCA AGCTTGTTTCTGAGAGGAAAAAACAATTTTGATTTATACCAACCTAACACCTTCAATTTCTTTTTTCTAAATGAGATTTA TCTCCAGTAATCCACTTTCAAAATCCTCTTCCACATTTTTTTTCAAACATGTGAATTAGTGACAACAAATTCTCTAGTAG TAGTTATTGTTGTCCTGTGTCTTTGTTCTTTTGGTGGGTTGTCTTTCAAGTTTCATCTTACATGTCCTTGATTTTGGAAC CCTTTTCTTTGCCACCATCAAAACCACCAATTCAAAATTCTACCAAACGAAAGAAACCACCTTGCTTATCCCTTGGTCCC TCAAACTCCACTACTGCACATGAAAACACAAAAACCCACTTGACCCTTCATGAGAGTTCTACCACAAACTATGCTTTGAT TCTTGAGTCCTGTGAATCCCTCAGTTTGGGAAAACAGGTGCATGCTCACTCCATAAAAGCTGGGTTTCATGGGCATGAGT TTGTTGAAACCAAGTTGCTTCAGATGTATTGTAGTAAAGGCTCTTTCGAAGATGCATGTATGGTGTTCGACACAATGCCC CTGAAGAATTTGCACTCTTGGACTGCACTCCTGCGTGTTCATGTTGACATGGGGTTCTTTGAAAAAGCGTTTTTCCTGTT TGAAGAACTGCTTCATGAGGAAAGGCTGGGAGTGGAATTGGAATTTTTCGTGTTCCCCGTGGTGCTGAACATTTGTTGTG GTCTAGGTGCTTTGGAGCTGGGGAGGCAGCTTCACGGGATGGTATTGAAACATGGGTTTGTTACCAATGTTTATGTGGGA AATTCTTTGGTAGATATGTATGGTAAATGTGGGAGCTTGGATGATGCCAAGAAAGTTCTACAAGGAATGCCCCAAAAGGA TCGTGTCTCATGGAATTCTATTATTACTGCTTGTGCTGCCAATGGGATGGTATATGAAGCATTGGATCTCTTGCACAATA TGTCTGAGGGTGAGTTGGCTCCCAACCTTGTTTCTTGGAGTGCGGTTATTGGAGGATTCTCGCAAAATGGTTATGATGTT GAGTCGATTCAACTGCTGGCCAAATTGCTAGGAGCAGGGATGAGGCCGAATGCTCGAACTCTTGCAAGTGTTCTTCCTGC TTGTGCCAGGATGCAATGGCTATGCCTTGGGAAAGAGTTTCATGGCTACATCGTTAGGCACGAGTTCTTCTCTAATGCTT TTGTTGTGAATGCATTAGTGGACATGTATCGAAGGTGTGGCGATATGAAAAGCGCCTTTAAAATATTTTCCAAGTATGCA AGAAAATGTGCAGCGACTTACAATACAATGATAGTTGGTTATTGGGAAAATGGAAATATCTTAAAGGCCAAGGAATTGTT TGATGAGATGGAGCAGGAAGGTGTAGTGAGGGACATGATATCATGGAATTCTATAATATCAGGGTATGTGGATAATTTCA TGCTTGATGAAGCCTTGAGGTTGTTCCGGGATTTACTGAATGAAGGAATTGAACCTGATTCCTTCACTCTTGGGAGTGTC CTTACTGGCTGTGCGGATACAGCTTCTATTCGACAAGGGAAAGAGATACATTCTCAAGCAATTGTCAGAGGTTTGCAGTC GAACTGTTTTGTTGGTGGAGCTTTGGTAGAAATGTACTCTAAATCTCAGGACATAGTGGCTGCTCAATTGGCATTTGATG AAGTGAGTGAAAGAGATCTAGCAACTTGGAACTCTTTGATATCCGGCTATGCCCGCTCTAATCGAATAGATAAGATGGGA GAGCTTCTTCAGCAAATGAAAGGGGATGGCTTTGAAGCCAATGTGCATACATGGAATGGTATTTTGGCTGGCTGTGTGGA AAATAGACAATACGATTCAGCAATGCAAATGTTCAATGAAATGCAAGTTTCAAATTTGAGGCCTGATATATACACAGTTG GAATAATTTTAGCAGCATGTTCCAAATTGGCTACAATCCAACGAGGAAAGCAGGTCCATGCATATTCCATAAGAGCCGGG CACGACTCTGATGTTCATATTGGAGCTGCCCTAGTGGACATGTATGCAAAATGTGGGAGTATTAAACACTGCTATGCAGT TTACAGCAAGATATCAAACCCTAATTTGGTTTGCCACAATTCCATGCTCACTGCTTGTGCCATGCACGGACACGGTGAAG AAGGAATCGCGCTTTTTCGCAGAATGTTGGATGGTGGAAAAGTTAGACCGGATCACGTGACTTTCCTATCAGTTCTTTCT TCATGTGTTCATGCAGGATCAATTGAGATTGGTCAGGAATGCTTTAATTTGATGGAAACGTATAATGTGACTCCCACATT GAAGCATTATACATGTATGGTTGATCTCATGAGTCGCGCAGGCAAGCTTGTCGAAGCATATCAACTTATCAAGAACATGC CGATGGAAGCTGATTCAGTGACCTGGAGTGCTATGCTTGGAGGTTGTTTTATTCATGGTGAAGTTACCTTTGGTGAAATT GCTGCAAAAAAGCTCATAGAATTGGAGCCGTATAACACTGGAAACTATGTTATGTTAGCAAACTTGTATGCTTCTGCAGG AAGATGGCATAATCTGGCTCAAACCAGACAATTGATAAAAGATAAGGGAATGCATAAGAATCCAGGATGCAGTTGGATAG AAGATAGAGATGGGGTTCATGTATTTCTTGCTAGTGATAAAGCACATAAAAGAGCATATGAGATATATTCTGTGCTGGAT AATTTGACTAATTTGATTAGAATAAAGCCTACGACTCATTCATAACATAAGCAAGTAGTCGTTAAATATTTAATTATGAA GAATGTGATTAATAAATTTGTCAATATATCATAAGCGCATACATCAACTTGACACAAGGTTGTTTTAACTTAAGCAGATG TCTCGAGTTCGAGTATCTATGAATACAATTTCGTTAAATACTTAGTAGGGAGAGTTA
CDS sequence (LotjaGi1g1v0081600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCTTGATTTTGGAACCCTTTTCTTTGCCACCATCAAAACCACCAATTCAAAATTCTACCAAACGAAAGAAACCACC TTGCTTATCCCTTGGTCCCTCAAACTCCACTACTGCACATGAAAACACAAAAACCCACTTGACCCTTCATGAGAGTTCTA CCACAAACTATGCTTTGATTCTTGAGTCCTGTGAATCCCTCAGTTTGGGAAAACAGGTGCATGCTCACTCCATAAAAGCT GGGTTTCATGGGCATGAGTTTGTTGAAACCAAGTTGCTTCAGATGTATTGTAGTAAAGGCTCTTTCGAAGATGCATGTAT GGTGTTCGACACAATGCCCCTGAAGAATTTGCACTCTTGGACTGCACTCCTGCGTGTTCATGTTGACATGGGGTTCTTTG AAAAAGCGTTTTTCCTGTTTGAAGAACTGCTTCATGAGGAAAGGCTGGGAGTGGAATTGGAATTTTTCGTGTTCCCCGTG GTGCTGAACATTTGTTGTGGTCTAGGTGCTTTGGAGCTGGGGAGGCAGCTTCACGGGATGGTATTGAAACATGGGTTTGT TACCAATGTTTATGTGGGAAATTCTTTGGTAGATATGTATGGTAAATGTGGGAGCTTGGATGATGCCAAGAAAGTTCTAC AAGGAATGCCCCAAAAGGATCGTGTCTCATGGAATTCTATTATTACTGCTTGTGCTGCCAATGGGATGGTATATGAAGCA TTGGATCTCTTGCACAATATGTCTGAGGGTGAGTTGGCTCCCAACCTTGTTTCTTGGAGTGCGGTTATTGGAGGATTCTC GCAAAATGGTTATGATGTTGAGTCGATTCAACTGCTGGCCAAATTGCTAGGAGCAGGGATGAGGCCGAATGCTCGAACTC TTGCAAGTGTTCTTCCTGCTTGTGCCAGGATGCAATGGCTATGCCTTGGGAAAGAGTTTCATGGCTACATCGTTAGGCAC GAGTTCTTCTCTAATGCTTTTGTTGTGAATGCATTAGTGGACATGTATCGAAGGTGTGGCGATATGAAAAGCGCCTTTAA AATATTTTCCAAGTATGCAAGAAAATGTGCAGCGACTTACAATACAATGATAGTTGGTTATTGGGAAAATGGAAATATCT TAAAGGCCAAGGAATTGTTTGATGAGATGGAGCAGGAAGGTGTAGTGAGGGACATGATATCATGGAATTCTATAATATCA GGGTATGTGGATAATTTCATGCTTGATGAAGCCTTGAGGTTGTTCCGGGATTTACTGAATGAAGGAATTGAACCTGATTC CTTCACTCTTGGGAGTGTCCTTACTGGCTGTGCGGATACAGCTTCTATTCGACAAGGGAAAGAGATACATTCTCAAGCAA TTGTCAGAGGTTTGCAGTCGAACTGTTTTGTTGGTGGAGCTTTGGTAGAAATGTACTCTAAATCTCAGGACATAGTGGCT GCTCAATTGGCATTTGATGAAGTGAGTGAAAGAGATCTAGCAACTTGGAACTCTTTGATATCCGGCTATGCCCGCTCTAA TCGAATAGATAAGATGGGAGAGCTTCTTCAGCAAATGAAAGGGGATGGCTTTGAAGCCAATGTGCATACATGGAATGGTA TTTTGGCTGGCTGTGTGGAAAATAGACAATACGATTCAGCAATGCAAATGTTCAATGAAATGCAAGTTTCAAATTTGAGG CCTGATATATACACAGTTGGAATAATTTTAGCAGCATGTTCCAAATTGGCTACAATCCAACGAGGAAAGCAGGTCCATGC ATATTCCATAAGAGCCGGGCACGACTCTGATGTTCATATTGGAGCTGCCCTAGTGGACATGTATGCAAAATGTGGGAGTA TTAAACACTGCTATGCAGTTTACAGCAAGATATCAAACCCTAATTTGGTTTGCCACAATTCCATGCTCACTGCTTGTGCC ATGCACGGACACGGTGAAGAAGGAATCGCGCTTTTTCGCAGAATGTTGGATGGTGGAAAAGTTAGACCGGATCACGTGAC TTTCCTATCAGTTCTTTCTTCATGTGTTCATGCAGGATCAATTGAGATTGGTCAGGAATGCTTTAATTTGATGGAAACGT ATAATGTGACTCCCACATTGAAGCATTATACATGTATGGTTGATCTCATGAGTCGCGCAGGCAAGCTTGTCGAAGCATAT CAACTTATCAAGAACATGCCGATGGAAGCTGATTCAGTGACCTGGAGTGCTATGCTTGGAGGTTGTTTTATTCATGGTGA AGTTACCTTTGGTGAAATTGCTGCAAAAAAGCTCATAGAATTGGAGCCGTATAACACTGGAAACTATGTTATGTTAGCAA ACTTGTATGCTTCTGCAGGAAGATGGCATAATCTGGCTCAAACCAGACAATTGATAAAAGATAAGGGAATGCATAAGAAT CCAGGATGCAGTTGGATAGAAGATAGAGATGGGGTTCATGTATTTCTTGCTAGTGATAAAGCACATAAAAGAGCATATGA GATATATTCTGTGCTGGATAATTTGACTAATTTGATTAGAATAAAGCCTACGACTCATTCATAA
Protein sequence (LotjaGi1g1v0081600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLILEPFSLPPSKPPIQNSTKRKKPPCLSLGPSNSTTAHENTKTHLTLHESSTTNYALILESCESLSLGKQVHAHSIKA GFHGHEFVETKLLQMYCSKGSFEDACMVFDTMPLKNLHSWTALLRVHVDMGFFEKAFFLFEELLHEERLGVELEFFVFPV VLNICCGLGALELGRQLHGMVLKHGFVTNVYVGNSLVDMYGKCGSLDDAKKVLQGMPQKDRVSWNSIITACAANGMVYEA LDLLHNMSEGELAPNLVSWSAVIGGFSQNGYDVESIQLLAKLLGAGMRPNARTLASVLPACARMQWLCLGKEFHGYIVRH EFFSNAFVVNALVDMYRRCGDMKSAFKIFSKYARKCAATYNTMIVGYWENGNILKAKELFDEMEQEGVVRDMISWNSIIS GYVDNFMLDEALRLFRDLLNEGIEPDSFTLGSVLTGCADTASIRQGKEIHSQAIVRGLQSNCFVGGALVEMYSKSQDIVA AQLAFDEVSERDLATWNSLISGYARSNRIDKMGELLQQMKGDGFEANVHTWNGILAGCVENRQYDSAMQMFNEMQVSNLR PDIYTVGIILAACSKLATIQRGKQVHAYSIRAGHDSDVHIGAALVDMYAKCGSIKHCYAVYSKISNPNLVCHNSMLTACA MHGHGEEGIALFRRMLDGGKVRPDHVTFLSVLSSCVHAGSIEIGQECFNLMETYNVTPTLKHYTCMVDLMSRAGKLVEAY QLIKNMPMEADSVTWSAMLGGCFIHGEVTFGEIAAKKLIELEPYNTGNYVMLANLYASAGRWHNLAQTRQLIKDKGMHKN PGCSWIEDRDGVHVFLASDKAHKRAYEIYSVLDNLTNLIRIKPTTHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 44 | 44 | - | – | |
| MobiDBLite | 15 | 44 | 30 | - | – | |
| Gene3D | 50 | 217 | 168 | 2.0E-21 | ||
| PANTHER | 55 | 179 | 125 | 2.6E-134 | – | |
| ProSiteProfiles | 85 | 115 | 31 | 6.61 | ||
| Pfam | 92 | 115 | 24 | 0.15 | ||
| ProSiteProfiles | 116 | 146 | 31 | 7.75 | ||
| Pfam | 119 | 144 | 26 | 0.027 | ||
| ProSiteProfiles | 154 | 188 | 35 | 6.336 | ||
| PANTHER | 158 | 255 | 98 | 2.6E-134 | – | |
| ProSiteProfiles | 189 | 219 | 31 | 8.484 | ||
| Gene3D | 218 | 285 | 68 | 1.3E-7 | ||
| Pfam | 219 | 267 | 49 | 2.2E-8 | ||
| ProSiteProfiles | 220 | 254 | 35 | 10.939 | ||
| TIGRFAM | 222 | 255 | 34 | 1.4E-5 | ||
| ProSiteProfiles | 255 | 289 | 35 | 9.12 | ||
| PANTHER | 293 | 388 | 96 | 2.6E-134 | – | |
| Gene3D | 309 | 456 | 148 | 2.3E-32 | ||
| ProSiteProfiles | 325 | 355 | 31 | 7.651 | ||
| Pfam | 328 | 351 | 24 | 0.14 | ||
| ProSiteProfiles | 356 | 390 | 35 | 11.082 | ||
| Pfam | 359 | 388 | 30 | 4.4E-8 | ||
| TIGRFAM | 359 | 391 | 33 | 2.4E-7 | ||
| ProSiteProfiles | 391 | 425 | 35 | 12.266 | ||
| Pfam | 391 | 438 | 48 | 9.7E-11 | ||
| TIGRFAM | 393 | 427 | 35 | 1.5E-7 | ||
| PANTHER | 394 | 563 | 170 | 2.6E-134 | – | |
| ProSiteProfiles | 426 | 460 | 35 | 6.862 | ||
| Gene3D | 467 | 625 | 159 | 3.2E-33 | ||
| ProSiteProfiles | 492 | 526 | 35 | 11.959 | ||
| TIGRFAM | 495 | 527 | 33 | 1.5E-7 | ||
| Pfam | 495 | 524 | 30 | 5.0E-7 | ||
| Pfam | 527 | 574 | 48 | 2.9E-12 | ||
| ProSiteProfiles | 527 | 561 | 35 | 11.674 | ||
| TIGRFAM | 529 | 563 | 35 | 7.5E-8 | ||
| ProSiteProfiles | 562 | 596 | 35 | 5.711 | ||
| PANTHER | 565 | 793 | 229 | 2.6E-134 | – | |
| ProSiteProfiles | 597 | 627 | 31 | 5.261 | ||
| Gene3D | 626 | 814 | 189 | 3.2E-31 | ||
| ProSiteProfiles | 628 | 662 | 35 | 9.065 | ||
| TIGRFAM | 630 | 664 | 35 | 2.3E-4 | ||
| Pfam | 630 | 657 | 28 | 6.3E-4 | ||
| ProSiteProfiles | 664 | 698 | 35 | 8.649 | ||
| Pfam | 666 | 695 | 30 | 0.68 | ||
| ProSiteProfiles | 699 | 729 | 31 | 7.245 | ||
| Pfam | 702 | 727 | 26 | 0.043 | ||
| ProSiteProfiles | 731 | 761 | 31 | 5.459 | ||
| ProSiteProfiles | 765 | 799 | 35 | 6.116 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0081600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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