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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0081800 |
| Transcript ID | LotjaGi1g1v0081800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase, putative; TAIR: AT3G55780.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q9FJU9|E1313_ARATH Glucan endo-1,3-beta-glucosidase 13; TrEMBL-Plants: tr|G7KBV7|G7KBV7_MEDTR Glycoside hydrolase family 17 protein; Found in the gene: LotjaGi1g1v0081800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11798798..11800461) extracted from Lotus japonicus Gifu genome v1.2.
GCCAGAAAGCCAAAGCCAAAGCAACCAAATATATATAGTAGAGTGATACTTGTGAAGACAAGTTAAGTTGAACGAAAATG ATTCTTCATCATATAATAATACACATTCTTCATTATATGTGTAGTGGGTACCAAATTCAGAAATAGCTAAATCAGTAGCA AAATCCCGCCATATTGTTGAAATTTCGAAACTACTTTCTAACTAACTATTTCACTCACTCTGTCACTCTCCCCGCTCAAT CCAAGAAGAAGCAATGCAGCATCACCACCACCACCTCCCAATGTTCATCTCCCTAACCCTCTCCCTCCTCCTCCTCCTCC TCCTCCCAACCACCGCCTCTCTCGGCGTCACCTACTCCAACAACCGCCAACAACCCCCACCTCCAGACCACATCACCACC GCACTCCAAACCCTCAAACTCACCTCCATCCGCCTCGAAGAACCTGACCCATCCATCATGCGCTCCCTCCTCTACTCCAA CATCTCCATCTTCCTCACCGTCCCCAACTACATCGTCACCTCCTTCGCCAACAACCGCTCCACCGCACGCGCCTGGCTCT ACACCCACGTCGTCCCGTACTACCCACGCGCCAAGATCACCACCATCTCCGTCGGTAACGCCTTCACCGATGTCTACCCT AACGCCGCCGATAATCTCCTCCCGGCGATCTCCAATATCCAGATCTCCCTCCGCGACCTCGGTATCCGGAAAATCGCCGT CTCCACTTCGTTCTCATTCGTCACCGCCGTAACTTCCCCCTTCCCGCCGTCCTCCGCCACTTTCCAAGATCCCGCCGGCG TTAACCTCATGGGGCCGCTGCTGCAATTCTTGAGCGATACGAACTCCTCGTTCTTGATCAACCTCTACCCGTACAATCTC TACCGCCTCCGCCCGGAGATTCCTCTCGGAATCGCGCTGTTTCAAGAACACTCGTTCAACTTCCGGGATGACGTCACCAC CGGAGTTCGCTACAAGAACCTCTTCGACATGATGGTCGACGCTGTTGCTTCCGCCATGGCCGTCGCTGGGTACGAGACGA TTCCGATTATCGTGACGGAGACTGGGTGGCCGAGCTCCGGCGCCGGCGATGAGTTTGATGCGAATTTGGGGTATGCTGAG ACCTATTTGAGGGGTTTGGTGAATCATCTGAGTTCTGGGTCGGGAACGCCTCTGTTGAAAGATGGGGTTCGAGAGGTTTA TGTGTACGAGCTTTTTGACAGGGAAGGAGCAACAACGGGTCGTGATTGGGGGCTTCTGAACCCGAATGGTACTGCCAAGT ACCACGTTGATTTCTCTGCTGCTTCATCAGGTTCTTCCATTACAGTGGCTCTGGTAATTTTCTGGATTCTGGTTCAGTTG GTCTGTAATGAATAGTGGAATCTACTGACACTGTTTCTTAGTTCAGGTTCTTTGATTTCATAGTTTTCTTTCAATCTGAG CTTGTTGGTTCATAGTGTCAATTCAGATATGGTGTACATTTTGTTCCAATTTTAGGGAGCTGTAGATATTGACTTGTGTC AACACTTTTAGATTCAGGGGTTAGTTGAGTAGCTATATACATTGTTTGTAATCAGAAATTGCTATGTGAAGAACAAAAGA GAAAGATGTTGATGATGGTCTTATTCTGTAGAGACCTATGTCAATTCAATTGTATTCAATTCTG
CDS sequence (LotjaGi1g1v0081800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCATCACCACCACCACCTCCCAATGTTCATCTCCCTAACCCTCTCCCTCCTCCTCCTCCTCCTCCTCCCAACCAC CGCCTCTCTCGGCGTCACCTACTCCAACAACCGCCAACAACCCCCACCTCCAGACCACATCACCACCGCACTCCAAACCC TCAAACTCACCTCCATCCGCCTCGAAGAACCTGACCCATCCATCATGCGCTCCCTCCTCTACTCCAACATCTCCATCTTC CTCACCGTCCCCAACTACATCGTCACCTCCTTCGCCAACAACCGCTCCACCGCACGCGCCTGGCTCTACACCCACGTCGT CCCGTACTACCCACGCGCCAAGATCACCACCATCTCCGTCGGTAACGCCTTCACCGATGTCTACCCTAACGCCGCCGATA ATCTCCTCCCGGCGATCTCCAATATCCAGATCTCCCTCCGCGACCTCGGTATCCGGAAAATCGCCGTCTCCACTTCGTTC TCATTCGTCACCGCCGTAACTTCCCCCTTCCCGCCGTCCTCCGCCACTTTCCAAGATCCCGCCGGCGTTAACCTCATGGG GCCGCTGCTGCAATTCTTGAGCGATACGAACTCCTCGTTCTTGATCAACCTCTACCCGTACAATCTCTACCGCCTCCGCC CGGAGATTCCTCTCGGAATCGCGCTGTTTCAAGAACACTCGTTCAACTTCCGGGATGACGTCACCACCGGAGTTCGCTAC AAGAACCTCTTCGACATGATGGTCGACGCTGTTGCTTCCGCCATGGCCGTCGCTGGGTACGAGACGATTCCGATTATCGT GACGGAGACTGGGTGGCCGAGCTCCGGCGCCGGCGATGAGTTTGATGCGAATTTGGGGTATGCTGAGACCTATTTGAGGG GTTTGGTGAATCATCTGAGTTCTGGGTCGGGAACGCCTCTGTTGAAAGATGGGGTTCGAGAGGTTTATGTGTACGAGCTT TTTGACAGGGAAGGAGCAACAACGGGTCGTGATTGGGGGCTTCTGAACCCGAATGGTACTGCCAAGTACCACGTTGATTT CTCTGCTGCTTCATCAGGTTCTTCCATTACAGTGGCTCTGGTAATTTTCTGGATTCTGGTTCAGTTGGTCTGTAATGAAT AG
Protein sequence (LotjaGi1g1v0081800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQHHHHHLPMFISLTLSLLLLLLLPTTASLGVTYSNNRQQPPPPDHITTALQTLKLTSIRLEEPDPSIMRSLLYSNISIF LTVPNYIVTSFANNRSTARAWLYTHVVPYYPRAKITTISVGNAFTDVYPNAADNLLPAISNIQISLRDLGIRKIAVSTSF SFVTAVTSPFPPSSATFQDPAGVNLMGPLLQFLSDTNSSFLINLYPYNLYRLRPEIPLGIALFQEHSFNFRDDVTTGVRY KNLFDMMVDAVASAMAVAGYETIPIIVTETGWPSSGAGDEFDANLGYAETYLRGLVNHLSSGSGTPLLKDGVREVYVYEL FDREGATTGRDWGLLNPNGTAKYHVDFSAASSGSSITVALVIFWILVQLVCNE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | - | – | |
| SignalP_EUK | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 11 | 24 | 14 | - | – | |
| PANTHER | 16 | 355 | 340 | 1.0E-155 | – | |
| PANTHER | 16 | 355 | 340 | 1.0E-155 | – | |
| Phobius | 25 | 29 | 5 | - | – | |
| Gene3D | 28 | 354 | 327 | 7.1E-92 | – | |
| Pfam | 30 | 347 | 318 | 8.9E-61 | ||
| SUPERFAMILY | 30 | 347 | 318 | 1.02E-61 | ||
| Phobius | 30 | 346 | 317 | - | – | |
| ProSitePatterns | 263 | 276 | 14 | - | ||
| Phobius | 347 | 367 | 21 | - | – | |
| TMHMM | 348 | 370 | 23 | - | – | |
| Phobius | 368 | 373 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0081800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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