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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0083000 |
| Transcript ID | LotjaGi1g1v0083000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/FYVE/PHD zinc finger superfamily protein; TAIR: AT5G05830.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1; TrEMBL-Plants: tr|G7KBU1|G7KBU1_MEDTR RING/FYVE/PHD zinc finger protein; Found in the gene: LotjaGi1g1v0083000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11932070..11937251) extracted from Lotus japonicus Gifu genome v1.2.
GAATTTTGTGCTTTTTACAAATTTATTCAGCTTGTGCCAGCTGCAAAAGAAAGAGCTTTTTCAGATAGCCTGTATCATAA GCATCCTCTTTCAAGATCATTCCCAATTCTCATTTCCCTTCTTTGTTCCATTTTCACTCCTCTGGCATCTCATAGTAGAA ACAAACACTGTATTTTCCTCCCTGAACTCATCAAGAGAAAGAGAAAGGTAGGGCCCACCCTTTATCTCACATCATAAACT CACATCATGTCACTTCACCATGACCCGTGTTGGAGAATCTCCTCTATTTTTAAGGTTTCTTATTGCTTGTTATTATTATT GTTATCACGGTATGGACATGGATATGGAGAAAATAACATCATTAAATAATTTTTCAAGTCCCTGAACTTTTCCTAAATTA TATTTTTCACCCCAGAAACAAACAAAACAAAAATGGAGGAAAAGGAAAATTTTGCTAAATTTCACCCATCAGATCACACT GCAATAATCATAATAATGCTGTTTCTCTTCCAACATCTTTTCTGAATTCTCATCACTCTCTCTCTCTCTCTCAAAAGTCT TGTGACTGTGAGTGACACAAGAAGAGAGAGATTCAGATCACCACCTACCACAGTTGAGTTACACACCTTGCACACAGTTC TTCACATTTTGACATTACCCTTTTGCTTCTCTGTGAAAGAGGTTGACAAAGATTGAAACTTAACTCATCAAAGCTTGGTG GGTATTGATCATTTTTGTCACCTTGTGTCATTACATGAAGATTCTCAACTTGGGTGTTCAAAATGCTGCTCAATGAGGAT GAAAAGTTGCATCATGTTGCTGTTGATATAGACAATGGCGGTGGTCACCGGAGCTCTGAAGGGTGTTCCGGCGACCGGGA GGAGGAGGAGCGAAGGGGGTGTTCTGATGGTTCTGGTGCTGAGATTGTGGGAGTGTGTGAAAAGGAGAGAGGAAGAGGAT CCTCTGCTTCAGATTCAGAGTGTTCTGTGGAGGTGGTGGATCTGGAAGGTGGTGGAGAGGAAGTCACAGATGGGAAGGTG CATTTGGCTAAGGTGGAGAGGGATTGCAGGATTTGCCATCTCAGCATGGATATGAGTATGAGCAATCAGGAATCTGGTAC TCCCATTGAGCTGGGGTGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAACAGTGTGCTGAGGCTTGGTTCAAGATCA AGGGTAACAAGTGAGTATGCTTACAAAGAAACTTGTATTTGTGTGTGTGTGTGTGTGTGTTTTTTTCTGAATGGTTTATG TTTTGGGGCAGAGTATTGATCCTTCTTGTGTGTGATGAATTTTGAGATTGATGAGTGCTGTTAACTATTTCAAGTGCTGT GTTTTTGTTTTTGGGTGAAATTATGGATAAGGCACTTAAGTGGCTCTAACATTTAGATGCTATTTTTCCAAATCTGGAGC TATTTGTCTTGTCTATTATACTCTATTTTGTTGCTTACCCTAACCCTTTGCATATGTGGTGCGCATAATGTGAAGAGAAC TTGGAATAGTGCTTGATGAAGTGTCTTTATAGTGGGGTGTGAATCTGATTCTTCTTTTGCAATATTAGACATAGTGTGAA CTAATATAAGCTACATTATTGCAAAAAGGGTTTTGGTAAAAAAATTGTTGGAGGAGAGGTGAAAGTATCCTCCTATTTGC AGGTCAAGGATCCAACTGTGCAAGCATACTTATCAGTGTTTCCAATATTTGTTTGATTTGTTTCTCCACCTTTCTGAACA GATTAGGTTTTGACTACCATAAGTCAACTTACATGGACTTTCTTGTGAGGCTCCACCATTTATTTATTGAATAGGTCATC ATTCTCCTTAAGAAAAATTCAATAAACAGATGTATGATCAACTTAGGACTTTTGAGATGTATGCATTTCATGATAGTTTC TCCCAGTGTTATCAAATATCCGCCATGGCAGTTTCTCATGGAGGTTTTTTGGCTTTCCGCCATGGCCAATATCCCGCCAT ATTTCACCATATCCTGCCATATTCCGCCATTATTTGTCATGTATGGTGGGATTTCGGCTTTCCGCCATGATCCGCCATCC TCAATTAACAACACTGGTTTCTCCTATTTTTCATCTTTAATTGTATACGGGTTCTGGTAATTTGTGAACTCCAAAATCAA CTAAATGATAGTCAAAAGTGGTGGATATGCCCAATGAAAGAAAAAGGTGTGCTTGGTTAACTAGTGAAAAGACTGAAGAG TGTTACCTTATTGCGAAGAGGAAGAAACAGTTTAGTCACTTATGTGCTTATTTATGTCTGGTACTGTTATGGTGGAGTGC ATGCTAAAATATTGCCCTAGTCAAATTATACATCTGCCAAATCTGATTTGATCTGGCTTAGTGGCCTTTCACTACTGGTC AACTCCAAATTGATTTGACGGCTAGAAAGTATATAACTTGGTTATATAACCTTCATCTTTTTATTTCTTATTCTTTATTT GCCAATTTTGGTTTCTAGCTTTTCACTCTGCTCTGTTTTTGTGGTCTGAAGCCTTAAAAATAAGCCGATATCTTTCATTT TAGGGATCCCACATGTTAGTTGTTATTGACCTTCAAAATCAGTTTTTATTTTGTTTTTGGAACCTTTTACTTATGAGTTA GGCATTGCATTGCTTTCTGGAATATGTCTTAGTACATTCGGACTTTCAGGAAGACTTACATCTCTGCTGTAACTTACAGC AGAGCCAGTGTCTTCCATATCTGTTGGTCTTTGGCTTTGCAGTATTTTGTAGACTGGCCAAATATCCTGTTTAAGGTGGA ATTGTGAAGAAGAAAAAAATCTGTTATTTTTGTTTTAGAGAGTTTTTGAGCTTTGAGATTGTAAAAGCAGATGTATGTGC TTCTACTTTGTATAATCTTCAGCAACTCCTAAGGGACATTGAGCTTTTCACATCTGCATCAAGCTCCTGAAAACCTAGTA ATAAGGCAAATTTGCATAAATCTGATGGTTGAGCCATAGGAAGAAACATTAAAAAATGCAGGGTCTAGATTGTTCTCCTG TTCCTGAATGATGCTTCCTCCTTTCTACAATTCTATTTCTCAGCAAAAGAAAGGAAAAGTTTTTGGGGTGGAAGAGCATA AGAACAAGTCACTAACTTGAATTCAACAGGGTGAGAAGGAGATAGGAGCCACTGATAATCAGAAAAGAAAAAAGATGTTC ATCAGGAAATTTTCTTTATGACATCCTGTTATTCTTGGCTTTTCCTTATAAACATGCTAATTGAATTTAAAGGATTAGTG CATTAAGTGCAAATAGAATTTGTTAATTGTTATTGATAGAAAGTTCTAGTTATTTGATGTTTGATCTGAGTTTATGACAC TTTACTCTCTAGTTTATTTGTGCATGGCCGTATATTTACTGATATGGAATGAAATATTAAGTTCTAAAGAGTTTTAGTTA TTGTAGAGAATAATATTAAGATGGAAATAATGGCTAAAGTTTCTTTTTTCCTTTCTAATTCACATTGTTTTCTTATTCTG TGCTAGTGAGTAATGACAACGTGTCTAATTCTAAGCATTTAGTTTTAGCTGGATTTAATGGCTACTCTCTATGGGATCAA AATCTAGCAGCTTCTTTCATCTGATGACAGTTTTGATGATTTCTAAATTACTTGTGTTGCAAATTGGTATGACTCTGATG TGCAGTTGAGCTTTCTGGCTTCAGTTTCCCTTATTTCTGGTTTTCATGATTCACTTTAATCTTATCTCTAGTTAAGAATA TTATGGTCAGGAATCTGGATCTTCTTTTCTTACCAGACATATATTTGCCTTAGATCAATTACTCTGTTTTACCTTTATCT TTATGTTTGGAAGCTCTCTAGTAACAAAATCACATCAGGAAGTCGGGCACTATGAAGCATTGAAGCTTCAAGATCTTTAA CAATGAATTGTTGGACAATTCTATGTGCAATTGTTAATCCCTATTTTTCAAGATTTGAATAGATTTACTTGTTTTTGGGT AAAAAATGGCTCAAGATCAGTCACTTTCTGGTTTGAATAGATTTACTTGTTTTTGAGTAAAATATTGCTCAAAAGATCAA TCATTTTCATTATAAGCATCATCAATATATTGGTCATGTAATTGCATATATTGTTGGGGTGGGGAAGGTTGGAGTGATAG ATATTGTGCAACTATTTTCTCAGTAATCATACTTAGGCATTTAAGCAGTGTAGACACGCCATAGACACCATGTCTTTCTT TCTATCTCATTTTTCTTAACACATTCATCATATATCACAACCATTACTTCTCTCCCTTTTCTTCCTTTCTCAATCTGGGT GCTTGTTGCGCTTCTACACTACGTGAATGTCTGCAAATCATTTTCCTTCTTTTTTGAGATTTTTTCATTTAGGAAAAAAT AATTGAAGGCACTTTGATGGGCAGGCTGGTGTGCCTCCATCTTTTAACTTTTGGATTAACACATTGAATGCAGCTTCTAC TAATCCATGCAACTGGTTCACTTCCACATGTGTATCTAAACCATTAGAAAATTTCTTGACTTATGTTTCACCTTCAGTTT TTAACTCCACTATTATTCTACTTGCATGATTAACAGAACTTGTGAAATCTGTGGATCAATTGCACACAATGTAGCTGGCG CTATTGAAGTTCAAATGACAGAACAGTGGAATGAGGCAAATGATCCTTCTTTGGCCCCACCAACTGGACCTGCACCCCCG GCCGAAACTCGAAATTTCTGGCAAGGTCACCGGTTTCTGAATTTCCTGTTAGCCTGCATGGTCTTTGCTTTTGTTATATC CTGGCTTTTTCACTTCAATGTTCCCTCTTGAATTCCAGAGGATGAAGCAGGTAAGATGATGGAGGGTTATTTAGAACACA CTGGTATCAAACTCAATACCATGTGTCTCCATAGTTGTATTAGTAGCTGGTATTTTACATGTATGATGTTCATATGTGTA TTTTTCCTGTACTTTTCTTATTTTGTTCAACCAGGAATGGTATCATGGATGGTTATCTTTCTTTCCTGAGTTAAATTTGT ATATCATTGTAGTGTTTTCTCTGCATCATGTGGAAATTATATTGGAATGGATATACAAGCTGGACATGTGGAGAAAATAT ATATTTGATGTTTGTGTTTAGTGTACATATTAACTAAGTATTAATAAGGAAATGAAGAAAAT
CDS sequence (LotjaGi1g1v0083000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGCTCAATGAGGATGAAAAGTTGCATCATGTTGCTGTTGATATAGACAATGGCGGTGGTCACCGGAGCTCTGAAGG GTGTTCCGGCGACCGGGAGGAGGAGGAGCGAAGGGGGTGTTCTGATGGTTCTGGTGCTGAGATTGTGGGAGTGTGTGAAA AGGAGAGAGGAAGAGGATCCTCTGCTTCAGATTCAGAGTGTTCTGTGGAGGTGGTGGATCTGGAAGGTGGTGGAGAGGAA GTCACAGATGGGAAGGTGCATTTGGCTAAGGTGGAGAGGGATTGCAGGATTTGCCATCTCAGCATGGATATGAGTATGAG CAATCAGGAATCTGGTACTCCCATTGAGCTGGGGTGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAACAGTGTGCTG AGGCTTGGTTCAAGATCAAGGGTAACAAAACTTGTGAAATCTGTGGATCAATTGCACACAATGTAGCTGGCGCTATTGAA GTTCAAATGACAGAACAGTGGAATGAGGCAAATGATCCTTCTTTGGCCCCACCAACTGGACCTGCACCCCCGGCCGAAAC TCGAAATTTCTGGCAAGGTCACCGGTTTCTGAATTTCCTGTTAGCCTGCATGGTCTTTGCTTTTGTTATATCCTGGCTTT TTCACTTCAATGTTCCCTCTTGA
Protein sequence (LotjaGi1g1v0083000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLNEDEKLHHVAVDIDNGGGHRSSEGCSGDREEEERRGCSDGSGAEIVGVCEKERGRGSSASDSECSVEVVDLEGGGEE VTDGKVHLAKVERDCRICHLSMDMSMSNQESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIAHNVAGAIE VQMTEQWNEANDPSLAPPTGPAPPAETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 17 | 17 | - | – | |
| MobiDBLite | 1 | 45 | 45 | - | – | |
| Phobius | 1 | 195 | 195 | - | – | |
| PANTHER | 7 | 220 | 214 | 1.9E-82 | – | |
| PANTHER | 7 | 220 | 214 | 1.9E-82 | – | |
| MobiDBLite | 26 | 42 | 17 | - | – | |
| Gene3D | 80 | 158 | 79 | 1.4E-12 | ||
| ProSiteProfiles | 87 | 155 | 69 | 17.748 | ||
| SUPERFAMILY | 92 | 151 | 60 | 2.12E-10 | – | |
| SMART | 94 | 149 | 56 | 2.8E-18 | ||
| CDD | 95 | 149 | 55 | 1.1813E-10 | – | |
| Pfam | 95 | 148 | 54 | 3.7E-9 | ||
| TMHMM | 196 | 218 | 23 | - | – | |
| Phobius | 196 | 214 | 19 | - | – | |
| Phobius | 215 | 220 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0083000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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