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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0085700 |
| Transcript ID | LotjaGi1g1v0085700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-related protein, expressed; TAIR: AT1G07410.1 RAB GTPase homolog A2B; Swiss-Prot: sp|Q40193|RB11C_LOTJA Ras-related protein Rab11C; TrEMBL-Plants: tr|I1M812|I1M812_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0085700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:12424733..12426869) extracted from Lotus japonicus Gifu genome v1.2.
GGCTTCTCGCCCGTTAATTCTGTTTTGGCTCAAACTCATTGTTGGCCTTGCAATGCGCCCTTTCTTCTCTCTCTCTATCC CTTTCTCTCTCCTCCCCTGTTCCTTGTTGCACAAACTTTGAATCTTTATCTGTTTGATTTGGTGGGTGTTGCAACCGAAT CATGGCGTACAAAGTAGACCATGAATATGACTATCTCTTCAAGGTTGTTTTGATTGGGGATTCTGGTGTTGGAAAATCCA ATATCCTTTCAAGGTTTACGCGAAATGAGTTCTGCTTGGAGTCTAAATCTACCATTGGGGTCGAATTTGCAACCAGAACA TTGCAGGTTGGTCCACATCTTAAATTTATGCAACTGTTATTGATTGTGATTATTGTTAATTACCCTTCTGTTGGTTTGTC TCATTGTTTGTAACTCAATTGATGCAGGAAACTATAATGAAAAATTCTCATGGAATTTTAGAATAATGCGAGTATTGGTT TAAATTCTATTGTAACTATTATAATCTGAATTTGTAATGTTTTGATTAGATTTTATGCTCACCGTGATTGGTTACACCAG TATATCACTAATTCTAAGAGCTAGGATGGTTTTATGGGTATGGTGATGACTGATCAATATAGGTATGAGGGCATTGGTGT TTCTAATTTCTTCAAATTTGTTAAGTAAGATTGCAATTTCGAGGCGTCTTGTGTATGGAAAACATTTCGCTGGCGGAGTT ATCCTCAGGAGAATGTAGATAAAAATATCACTATTATCTTCCATGGAGGATACCTATGTTACTAACATAATTTATGGATG TGTTAGTTTCAGAAGGTTTGAACATCTATTTAAGAGTTTTACTGCCCAAAGAGGTCATACTCTGGCTTGAACAAATTGCC TTAGTGGAGGATGCTTGGGGTTTAAAAAAAAAAGATAAAATGTTAAGATAGATTGGTATTTTTGAGGAGCAAGGTTAGTT TTATGGGAAAGGTACTAAATTTGAGTTCCCAAAAAAATTTGATGTTTAGTTCTAGAAGAAATGTTTGAAAGTAAGTTTTT TTTTTCATTTCTCTTGCATGTTGATGATTTGCTTGAGTGAAGAAACTGAATTTCTATTGCTAAATATATTTTTGAGGTCT TATCTTCTTTTGGAATGCAGGTGGAGGGAAAGACTGTAAAGGCACAAATATGGGACACTGCTGGCCAAGAGAGGTACAGA GCAATCACTAGTGCATACTACAGAGGAGCTGTTGGTGCCTTGTTAGTCTATGACATAACCAAGAGACAAACATTTGACAA TGTTCAAAGGTGGCTTCGCGAGCTACGGGACCATGCCGACTCCAACATCGTTATCATGATGGCTGGAAACAAATCCGACT TGAATCATCTCAGAGCGGTATCAACTGAAGATGCTCAAAGTCTGGCAGAGAAGGAAGGTTTGTCCTTTCTAGAGACTTCA GCATTGGAGGCATTTAATGTTGAGAAGGCATTCCAAACCATTTTGTTTGATATATATCACATTGTAAGTAAAAAAGCACT GGCGGCACAAGAGGCTACTTCCGGTACTGGCGTTCCTCAAGGAACTACCATAAATGTCTCAAACATGTCAGGTAATACAG GCAACAAAACTTGTTGCTCTAACTAACAGGGTAGCTGTGTAGAAAAGAAGAGGAAAACAAAGGTTTTTCAGAAAATTGTT ATCTGAAAACACATGAAGAATAGTTGTTAGTTGTGCTACCTTTTGCCAGATTTATAGCATGTTTGGATCAGCTTCTCGTT TCTCATAACCAATTCTGACACCTAAAAGCTATTACAGAAGCTTCTTTCCATAAATGATTTTGACTTTAGAATCAATTGTA GAAAGATTTTCAAATATGCACTTATTCCGGGAGAGCTTTTATCCCTTTAGTCTTCAAGAATTTCAATTGAAACTTGAAAG TGAATATGGAGGCTTACAAGTTACAATTTAGATACTTCACTTTGGTGTTAAGTGGTGCTGAAATTTATGCATTCAGAGTT AGGATCATAGTGGTCAAGTCTGAGTTTAGTCATAAGCAGAAATATTGTAAATCTAGTTTATCAGTTAATTTGCTCCTGTT CTTTATAGTGTATATGTTTCACTCTCAATAACATATTGGAGTTTTTTCTAATTCTAA
CDS sequence (LotjaGi1g1v0085700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTACAAAGTAGACCATGAATATGACTATCTCTTCAAGGTTGTTTTGATTGGGGATTCTGGTGTTGGAAAATCCAA TATCCTTTCAAGGTTTACGCGAAATGAGTTCTGCTTGGAGTCTAAATCTACCATTGGGGTCGAATTTGCAACCAGAACAT TGCAGGTGGAGGGAAAGACTGTAAAGGCACAAATATGGGACACTGCTGGCCAAGAGAGGTACAGAGCAATCACTAGTGCA TACTACAGAGGAGCTGTTGGTGCCTTGTTAGTCTATGACATAACCAAGAGACAAACATTTGACAATGTTCAAAGGTGGCT TCGCGAGCTACGGGACCATGCCGACTCCAACATCGTTATCATGATGGCTGGAAACAAATCCGACTTGAATCATCTCAGAG CGGTATCAACTGAAGATGCTCAAAGTCTGGCAGAGAAGGAAGGTTTGTCCTTTCTAGAGACTTCAGCATTGGAGGCATTT AATGTTGAGAAGGCATTCCAAACCATTTTGTTTGATATATATCACATTGTAAGTAAAAAAGCACTGGCGGCACAAGAGGC TACTTCCGGTACTGGCGTTCCTCAAGGAACTACCATAAATGTCTCAAACATGTCAGGTAATACAGGCAACAAAACTTGTT GCTCTAACTAA
Protein sequence (LotjaGi1g1v0085700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYKVDHEYDYLFKVVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSA YYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSTEDAQSLAEKEGLSFLETSALEAF NVEKAFQTILFDIYHIVSKKALAAQEATSGTGVPQGTTINVSNMSGNTGNKTCCSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 185 | 185 | 0.0096 | – | |
| PANTHER | 4 | 214 | 211 | 9.6E-123 | – | |
| PANTHER | 4 | 214 | 211 | 9.6E-123 | – | |
| SUPERFAMILY | 8 | 178 | 171 | 1.57E-59 | ||
| ProSiteProfiles | 8 | 214 | 207 | 36.409 | – | |
| SMART | 10 | 176 | 167 | 4.5E-28 | – | |
| CDD | 10 | 174 | 165 | 5.2517E-128 | – | |
| Gene3D | 10 | 197 | 188 | 3.5E-68 | – | |
| TIGRFAM | 11 | 169 | 159 | 6.3E-40 | ||
| PRINTS | 13 | 34 | 22 | 2.2E-40 | – | |
| SMART | 13 | 176 | 164 | 4.2E-113 | – | |
| Pfam | 14 | 173 | 160 | 2.8E-61 | ||
| SMART | 15 | 172 | 158 | 6.5E-11 | – | |
| SMART | 18 | 213 | 196 | 9.9E-8 | – | |
| PRINTS | 36 | 52 | 17 | 2.2E-40 | – | |
| PRINTS | 54 | 76 | 23 | 2.2E-40 | – | |
| PRINTS | 116 | 129 | 14 | 2.2E-40 | – | |
| PRINTS | 151 | 173 | 23 | 2.2E-40 | – | |
| MobiDBLite | 196 | 216 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi1g1v0085700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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