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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0085700 |
| Transcript ID | LotjaGi1g1v0085700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras family protein; TAIR: AT1G07410.1 RAB GTPase homolog A2B; Swiss-Prot: sp|Q40193|RB11C_LOTJA Ras-related protein Rab11C; TrEMBL-Plants: tr|I1M812|I1M812_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0085700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:12425861..12426358) extracted from Lotus japonicus Gifu genome v1.2.
TTTGGAATGCAGGTGGAGGGAAAGACTGTAAAGGCACAAATATGGGACACTGCTGGCCAAGAGAGGTACAGAGCAATCAC TAGTGCATACTACAGAGGAGCTGTTGGTGCCTTGTTAGTCTATGACATAACCAAGAGACAAACATTTGACAATGTTCAAA GGTGGCTTCGCGAGCTACGGGACCATGCCGACTCCAACATCGTTATCATGATGGCTGGAAACAAATCCGACTTGAATCAT CTCAGAGCGGTATCAACTGAAGATGCTCAAAGTCTGGCAGAGAAGGAAGGTTTGTCCTTTCTAGAGACTTCAGCATTGGA GGCATTTAATGTTGAGAAGGCATTCCAAACCATTTTGTTTGATATATATCACATTGTAAGTAAAAAAGCACTGGCGGCAC AAGAGGCTACTTCCGGTACTGGCGTTCCTCAAGGAACTACCATAAATGTCTCAAACATGTCAGGTAATACAGGCAACAAA ACTTGTTGCTCTAACTAA
CDS sequence (LotjaGi1g1v0085700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGGTGGAGGGAAAGACTGTAAAGGCACAAATATGGGACACTGCTGGCCAAGAGAGGTACAGAGCAATCACTAGTGC ATACTACAGAGGAGCTGTTGGTGCCTTGTTAGTCTATGACATAACCAAGAGACAAACATTTGACAATGTTCAAAGGTGGC TTCGCGAGCTACGGGACCATGCCGACTCCAACATCGTTATCATGATGGCTGGAAACAAATCCGACTTGAATCATCTCAGA GCGGTATCAACTGAAGATGCTCAAAGTCTGGCAGAGAAGGAAGGTTTGTCCTTTCTAGAGACTTCAGCATTGGAGGCATT TAATGTTGAGAAGGCATTCCAAACCATTTTGTTTGATATATATCACATTGTAAGTAAAAAAGCACTGGCGGCACAAGAGG CTACTTCCGGTACTGGCGTTCCTCAAGGAACTACCATAAATGTCTCAAACATGTCAGGTAATACAGGCAACAAAACTTGT TGCTCTAACTAA
Protein sequence (LotjaGi1g1v0085700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLR AVSTEDAQSLAEKEGLSFLETSALEAFNVEKAFQTILFDIYHIVSKKALAAQEATSGTGVPQGTTINVSNMSGNTGNKTC CSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 161 | 161 | 7.0E-85 | – | |
| PRINTS | 1 | 23 | 23 | 2.2E-22 | – | |
| SMART | 1 | 123 | 123 | 8.4E-11 | – | |
| SMART | 1 | 123 | 123 | 6.5E-63 | – | |
| PANTHER | 1 | 161 | 161 | 7.0E-85 | – | |
| ProSiteProfiles | 1 | 161 | 161 | 26.875 | – | |
| Gene3D | 1 | 145 | 145 | 1.6E-48 | – | |
| SMART | 1 | 119 | 119 | 6.3E-6 | – | |
| Pfam | 2 | 120 | 119 | 1.6E-43 | ||
| TIGRFAM | 2 | 116 | 115 | 5.4E-26 | ||
| SUPERFAMILY | 2 | 125 | 124 | 3.3E-40 | ||
| PRINTS | 63 | 76 | 14 | 2.2E-22 | – | |
| PRINTS | 98 | 120 | 23 | 2.2E-22 | – | |
| MobiDBLite | 143 | 163 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi1g1v0085700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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