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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0086000 |
| Transcript ID | LotjaGi1g1v0086000.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48484|PP14_ARATH Serine/threonine-protein phosphatase PP1 isozyme 4; TrEMBL-Plants: tr|C6TII4|C6TII4_SOYBN Serine/threonine-protein phosphatase; Found in the gene: LotjaGi1g1v0086000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:12453407..12455234) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGCGCACAAGGGCAAGGGCAAGTGATTGAGGAGGCGGTGCTGGACGACATAATCCGGCGACTCACGGAGGTCCGTTT GGCCCGACCGGGGAAGCAGGTTCAGCTCTCTGAGGCGGAGATCAAGCAGCTTTGTGTCGCTTCCAGAGAGCTCTTCATTC AGCAGCCCAATTTGCTCGAACTTGAAGCACCCATTAAGATTTGTGGTACATATTCTGTGTTTTGCTTTTCAATTTCGCCT ACCCATTTGGCTCTTTTTTGTTTTTAGGGTTTAAAGATTTTTTTTTGGGATTGCATGCTGGTGAGTATCCTTTGTTTGTT GCAAGTTAGAGCCTTTCAGTTTTAGGGTATACTTGGTTAGTTGGTTGCTTGGTAGGGATGGGTGAAAGAAAATGTGGGTT ACCCTTTTATTTTTAAGGCATGTAAAACTAAAATTTGGGGGATTGACGATATAGATAATGAGATTAATTTCTATGCAGTG ACGGTGTAAATAAGTTTTACACAATCGTTCAATCACAACCGTTTATTTTGTTAGCTCATAATTAACTTTGAATTTAATAA TATTTAAAATAAGAAATTGAATGATGTGATTGAATGACTGTGTAATACTTTTTAGTTTTTACACTGTTAGTGTATAGAAA TTAATCTCATAAATAATTGTTTATGAACTTTTGTATGTCATTTTGTTCACTCCTTGTTTTAAGTATATGGTGTTTACATG CACTTTGTGTTGTAGATTAGTGATTGTTATGTTGCTAGTTTATTTGGGGTGTGTTTTTATTAGGGTTTCCTTGTTCATTT GTGGTATGTTTGAAGTCTCTTTTTGCTTTTTCAGGTGACATTCATGGGCAGTACAGTGATTTGTTGAGGCTCTTTGAGTA TGGGGGTTTGCCTCCAAGTGCTAATTATCTCTTTTTAGGGGACTATGTGGATCGTGGGAAGCAGAGCTTAGAAACCATAT GTCTTTTGCTTGCTTATAAAATCAAATATCCTGAAAACTTTTTCCTTTTGAGGGGGAATCATGAGTGTGCTACCATTAAC AGGATATATGGATTTTATGACGAATGTAAGCGGAGGTTTAATGTCAGGCTTTGGAAAGCCTTTACGGACTGTTTTAACTG CCTTCCTGTGGCAGCCCTTATAGATGATAAGATATTGTGCATGCATGGTGGTCTTTCCCCTGAACTCACAAACTTGGATC AAATCAGGAATCTACCCCGTTCAACTCCTATTCCAGACACTGGTTTGCTTTGTGATTTGCTTTGGTCTGATCCGGGTAGA GATGTGAAAGGTTGGGGTATGAATGACAGAGGAGTCTCGTACACCTTCGGTCCCGATAAGGTGTCTGAGTTTTTGACAAA GCATGACTTGGACCTTATTTGTCGTGCTCATCAGGTCAGTCTACATTTTATGCCTCTCTCCGTCTCCTTTTTTGAAGTCA TTCATTCACCTTCTCGTAGAGAAAGGGTATAGTTATGGTGCTTTACTGTAAACTGACACTATAATCTTTCTATAGGTTGT TGAGGATGGGTATGAATTCTTTGCCGACAGGCAACTTGTTACGATATTTTCAGCTCCAAACTACTGTGGTGAATTTGACA ATGCTGGTGCAATGATGAGTGTGGATGAGAACTTGATGTGCTCTTTCCAGATTCTTAAGCCTGCAGTGCAAAAAACAAAG TTCGTGATGCCAAACAAGATTTGATGGTTGGCTTATCACTATTGCTTAATGAACTAAGGTGTGGTTATTGTTGCATTTGT CTCGTATGGTATTATAGTTAAGGGTAATCAATTATACATTCTGAAGTGCAAAATATTTTTCTACGTAG
CDS sequence (LotjaGi1g1v0086000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCGCACAAGGGCAAGGGCAAGTGATTGAGGAGGCGGTGCTGGACGACATAATCCGGCGACTCACGGAGGTCCGTTT GGCCCGACCGGGGAAGCAGGTTCAGCTCTCTGAGGCGGAGATCAAGCAGCTTTGTGTCGCTTCCAGAGAGCTCTTCATTC AGCAGCCCAATTTGCTCGAACTTGAAGCACCCATTAAGATTTGTGGTGACATTCATGGGCAGTACAGTGATTTGTTGAGG CTCTTTGAGTATGGGGGTTTGCCTCCAAGTGCTAATTATCTCTTTTTAGGGGACTATGTGGATCGTGGGAAGCAGAGCTT AGAAACCATATGTCTTTTGCTTGCTTATAAAATCAAATATCCTGAAAACTTTTTCCTTTTGAGGGGGAATCATGAGTGTG CTACCATTAACAGGATATATGGATTTTATGACGAATGTAAGCGGAGGTTTAATGTCAGGCTTTGGAAAGCCTTTACGGAC TGTTTTAACTGCCTTCCTGTGGCAGCCCTTATAGATGATAAGATATTGTGCATGCATGGTGGTCTTTCCCCTGAACTCAC AAACTTGGATCAAATCAGGAATCTACCCCGTTCAACTCCTATTCCAGACACTGGTTTGCTTTGTGATTTGCTTTGGTCTG ATCCGGGTAGAGATGTGAAAGGTTGGGGTATGAATGACAGAGGAGTCTCGTACACCTTCGGTCCCGATAAGGTGTCTGAG TTTTTGACAAAGCATGACTTGGACCTTATTTGTCGTGCTCATCAGGTTGTTGAGGATGGGTATGAATTCTTTGCCGACAG GCAACTTGTTACGATATTTTCAGCTCCAAACTACTGTGGTGAATTTGACAATGCTGGTGCAATGATGAGTGTGGATGAGA ACTTGATGTGCTCTTTCCAGATTCTTAAGCCTGCAGTGCAAAAAACAAAGTTCGTGATGCCAAACAAGATTTGA
Protein sequence (LotjaGi1g1v0086000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAQGQGQVIEEAVLDDIIRRLTEVRLARPGKQVQLSEAEIKQLCVASRELFIQQPNLLELEAPIKICGDIHGQYSDLLR LFEYGGLPPSANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECATINRIYGFYDECKRRFNVRLWKAFTD CFNCLPVAALIDDKILCMHGGLSPELTNLDQIRNLPRSTPIPDTGLLCDLLWSDPGRDVKGWGMNDRGVSYTFGPDKVSE FLTKHDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMSVDENLMCSFQILKPAVQKTKFVMPNKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 7 | 315 | 309 | 3.9E-138 | ||
| PANTHER | 11 | 314 | 304 | 6.2E-202 | – | |
| PANTHER | 11 | 314 | 304 | 6.2E-202 | – | |
| CDD | 14 | 304 | 291 | 0.0 | – | |
| Pfam | 15 | 62 | 48 | 8.5E-20 | ||
| SUPERFAMILY | 25 | 307 | 283 | 1.47E-118 | – | |
| SMART | 36 | 306 | 271 | 4.6E-175 | ||
| Pfam | 64 | 255 | 192 | 4.8E-41 | ||
| PRINTS | 64 | 91 | 28 | 6.8E-95 | ||
| PRINTS | 93 | 120 | 28 | 6.8E-95 | ||
| PRINTS | 126 | 150 | 25 | 6.8E-95 | ||
| ProSitePatterns | 127 | 132 | 6 | - | ||
| PRINTS | 160 | 186 | 27 | 6.8E-95 | ||
| PRINTS | 189 | 216 | 28 | 6.8E-95 | ||
| PRINTS | 246 | 266 | 21 | 6.8E-95 | ||
| PRINTS | 268 | 284 | 17 | 6.8E-95 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi1g1v0086000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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