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LotjaGi1g1v0086200.2

Overview

Field Value
Gene ID LotjaGi1g1v0086200
Transcript ID LotjaGi1g1v0086200.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description WD repeat-containing protein; TAIR: AT5G05970.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|B3H5K9|NEDD1_ARATH Protein NEDD1; TrEMBL-Plants: tr|A0A1J7HQG3|A0A1J7HQG3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0086200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:12482275..12485058) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCGTTGTTGGCAGCAAGCGGCGGCGACACCGTTAAGCTATTCGACGCCTCCGTCAAGCCCGGCGATCCTTGTACTCT CAGCTTCACCCCTTCTCCTGGTTCTCAAGTCCACTCAGTGAAGTGGAATCACACCAGTGAGTTCAATTTTTTTTTTGCTT TCTAGGGTTTGCATTTTCTAATTCTGATGGGTTCTGGTTATGTTGGATTCGTTTGTGAAATTGGATGTTGCATTGTTTTT TCTGCTGCTGAATTTGGTTTCTTCGCAGATTTGGTTGTGGCCAGTGCTGGGGATGACAAGAGGATCTCCTTGTGGCGTAA GAATGGGCACAGCATGGGGACCATTCCGCTCGCCGGTACTGACAGCGGTGACAACATTGAGGTAGTTTTTGCTTTTGGAT GTGGAATATGTATTGTAGTGTATTGTACAGAAATTTAAATGTTTCATTTTAGTGTTGCTGAAACATTGTAAATTTTGCAC TTATTTGAAGTGGTTTTTATAAGAATTTAGGACTAATTAAATGCGTTGTCGTTATCAAAATAAACTTGCTTGCGAGATCC TTGGTGTAATTTTTATAGTGTTTTTTTAAGAATTGAATTAATAAAAAAAACACTTTGAAGAATTTCCTTTGGCTATCTTG CCATAGTTGGTTCTTGATGGATTTTTCAGGAGAATGAACAAAGACAGGGAAACCCCTTAGTATGATACATTAATTTCTTC TTTGATGTATCTCCTCCAACTCTATAAGAGCATTTATAGAGACTAACTAGAGTTACTTTCCTGCCTGAGCAAGTTCTTTC TTTTCTTTTGTTTGCCGTAATTATGTGCTCACTCCGGTGTGTTAGTGGTACTGGTAGTTCATGATTGCAGCACAATCGAT AACTTTCTTTTTGTTCTTTCTGGGTTACTTCATGTTTTTTTTTTCACTTTAACCTTCTTCGGTAGGAATCTATATCGGCT ATCAGCTTCAGCAACAAGGCATCCAGATATATATGTTCGGGAGGAAGTGGTCAAGTTGTAAGGATATGGGATTTGCAAAG GAAGCGCTGTATTAAATGGCTCAAAGGTCATACTAATACTATCACAGGAGTAATGTACAATTGCAAAGATGAATATTTGG CTTCTATCAGTCTTAGTGGGGACCTTATACTTCATAGCCTTGCTTCAGGCCAAAGGGCTGCTGAACTTAAAGATCCCAAT CAACAGGTTTTTCTTCTTTGTTTTAAGTGAAATCCTCTGCTTCTTCGTGTTTTGGCTTTGTGTATGTGTATATGGACTAA TCTGCCATTTTTGACATTGTAAGACCAGGTGTTGAGAGTTCTTGATTATTCGCGGGTGAATCGCCACCTTCTTGTTACTG CCGGTGATGAGGGGACAGTACATTTGTGGGATACAACTGGTCGCAGTCCCAAGGTATGGGACGTGACAACTCCATGATTA TATAACATGCTGCAACATTCTACAGTTGTGAACTTGGTTAATAGTTGAGCAATCAATTGGTCTTCTATGTTCAAAATAGT AAATTAGTAATTAGTAATAGAGAACAACTTGTACTCGTTAGTCATAACATTTGTCTCTCATAAAACCTTTATAGTCGTGG TTTGATTGTATTGAAAAGCAACTTTTTTTTTCTGTTAGAAATATAATATATAACCATTCATGTGACCTTTACTCAACATC TTAAGCTTCTGGGATAATTGGTTGTTTGACATGATATCAAAGCCTCTATGACTAAGTGGTCTAGAGTTGAATCCTTGCCG GCCCCAATACTTCTAAGAAAAAAAAGTTGAATTTAAGCACATGGTATGTGAGCATGTGCATTGTCCACGCTTCTTGCATG AGGGGGCGTGTTAGAAATACAATATAAAACCATTCATGTGGCTTTTACACAACAACCTAAGCTTTTAGGAATTTAGGATA ATTGGATTATCATTTAAACCATGTTTTGGGATCCAAAATTATCTTCAAACATAAACCCAACCTTAGATTTGTCAACCATG TTAGTTTTTTATGAAACTCGGTTTGAGGCATGTAAACTATTATCTAAACATGCTATTAATAATCAGTTTTGTCTTATTGT AGTTTAACGAATTATCTCTTTATGTAGGAAGTTTTCCTTTTTTGACGTCTCCTTTTTTTGTTATTATTTCAAATGTATAC ATTGAAATTGACTATATATTTTTCTTTCTTTTCCCTTTGCTTTTGAAAAAAAAGGTTTCTTGGATGAAGCAGCATTCTGC ACCAACTGCTGGTATTAGCTTCTCTCCATCCAATGACAAGGTTTCTTTTTTCATGGATTGTTTTAATTTTATATACATAA CGAGGCTGTTTCATTCTGCTGTGAAGTCGTGACCCTTTATGATAAATTTGCTCTCTGATATCTTCCAATTGACAGATCAT TGCTAGTGTTGGACTTGATAAAAAATTATACACTTATGACATTGGATCTAGAAGACCATCATCTTGCATTTCTTATGAAT CGCCTTTTTCTTCACTGGCCTTTCGAGATGATGGATGGATGCTGGCTGCTGGAACTGGCAATGGCCGTGTGGCATTCTAT GATGTCCGCGGAAAACCACAACCTTTTGTTGTTCTTCATGCTTTTGGTAGTTCAGAGGTATTTTTTTGCTTCATTTACAG TGTTTTGTCTTGTCTTCATGGTTTAATGTTTTTAAGCCTTCAATTATTTACTGTTTAATATTTGCCTCACCTGATAATGA GATGTACATGGACTCATGGAAGTGGAAGTATTTGGGAACTACTTTGCATCTAACACTAGCATAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0086200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGTTGTTGGCAGCAAGCGGCGGCGACACCGTTAAGCTATTCGACGCCTCCGTCAAGCCCGGCGATCCTTGTACTCT CAGCTTCACCCCTTCTCCTGGTTCTCAAGTCCACTCAGTGAAGTGGAATCACACCAATTTGGTTGTGGCCAGTGCTGGGG ATGACAAGAGGATCTCCTTGTGGCGTAAGAATGGGCACAGCATGGGGACCATTCCGCTCGCCGGTACTGACAGCGGTGAC AACATTGAGGAATCTATATCGGCTATCAGCTTCAGCAACAAGGCATCCAGATATATATGTTCGGGAGGAAGTGGTCAAGT TGTAAGGATATGGGATTTGCAAAGGAAGCGCTGTATTAAATGGCTCAAAGGTCATACTAATACTATCACAGGAGTAATGT ACAATTGCAAAGATGAATATTTGGCTTCTATCAGTCTTAGTGGGGACCTTATACTTCATAGCCTTGCTTCAGGCCAAAGG GCTGCTGAACTTAAAGATCCCAATCAACAGGTGTTGAGAGTTCTTGATTATTCGCGGGTGAATCGCCACCTTCTTGTTAC TGCCGGTGATGAGGGGACAGTACATTTGTGGGATACAACTGGTCGCAGTCCCAAGGTTTCTTGGATGAAGCAGCATTCTG CACCAACTGCTGGTATTAGCTTCTCTCCATCCAATGACAAGATCATTGCTAGTGTTGGACTTGATAAAAAATTATACACT TATGACATTGGATCTAGAAGACCATCATCTTGCATTTCTTATGAATCGCCTTTTTCTTCACTGGCCTTTCGAGATGATGG ATGGATGCTGGCTGCTGGAACTGGCAATGGCCGTGTGGCATTCTATGATGTCCGCGGAAAACCACAACCTTTTGTTGTTC TTCATGCTTTTGGTAGTTCAGAGGCCTCACCTGATAATGAGATGTACATGGACTCATGGAAGTGGAAGTATTTGGGAACT ACTTTGCATCTAACACTAGCATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0086200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MALLAASGGDTVKLFDASVKPGDPCTLSFTPSPGSQVHSVKWNHTNLVVASAGDDKRISLWRKNGHSMGTIPLAGTDSGD NIEESISAISFSNKASRYICSGGSGQVVRIWDLQRKRCIKWLKGHTNTITGVMYNCKDEYLASISLSGDLILHSLASGQR AAELKDPNQQVLRVLDYSRVNRHLLVTAGDEGTVHLWDTTGRSPKVSWMKQHSAPTAGISFSPSNDKIIASVGLDKKLYT YDIGSRRPSSCISYESPFSSLAFRDDGWMLAAGTGNGRVAFYDVRGKPQPFVVLHAFGSSEASPDNEMYMDSWKWKYLGT TLHLTLA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45096
2 303 302 4.0E-205 –
Gene3D
G3DSA:2.130.10.10
2 166 165 2.3E-22
IPR015943
SUPERFAMILY
SSF50978
7 295 289 1.58E-45
IPR036322
SMART
SM00320
22 62 41 0.011
IPR001680
Pfam
PF00400
28 61 34 0.024
IPR001680
ProSiteProfiles
PS50294
30 251 222 22.913
IPR017986
SMART
SM00320
64 112 49 0.66
IPR001680
SMART
SM00320
115 154 40 0.015
IPR001680
SMART
SM00320
157 198 42 0.71
IPR001680
Gene3D
G3DSA:2.130.10.10
167 303 137 5.2E-23
IPR015943
SMART
SM00320
202 242 41 0.15
IPR001680
SMART
SM00320
245 283 39 0.54
IPR001680

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0086200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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