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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0087600 |
| Transcript ID | LotjaGi1g1v0087600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone DnaJ; TAIR: AT5G02160.1 transmembrane protein; Swiss-Prot: sp|P47265|DNAJ_MYCGE Chaperone protein DnaJ; TrEMBL-Plants: tr|I3SFD1|I3SFD1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0087600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:12699556..12702860) extracted from Lotus japonicus Gifu genome v1.2.
TGATATCCAATAACTCAAAACAGTTTATTCAGTTCTCAGTTCAATTCTCACTTTCCAACTCTTACCACATTCTTCACTGT GAAAAGACAATTTGCTTGGAAAGATCATGGCATCCCTGATTCCCCTGCATACTATCATTCCCAGAAACACCACCGTTTCC AAAACTGGACTCTCATCTGCAGGCTTAACTGGTGTGCCATGTAGCAGGATTCAGAAGAACAAGAATAGAACTTTAACAGT GGTTTCTGCCGTTGGAGATGTGTCTGCTGATGGTAACACTTACCTCATTGCTGGTGCTATTGCTGTGGCTCTGGTTGGAA CAGCATTTCCTATCCTCTTCTCTCGCAAAGACACGTATGTAGCATCATCTTTACCAAATACCAACCTTTTATAGGATTGA TTTAGATTCAGTGCACGCAGTCACTTTGCAGTCAAGTTTATTTTATGGGAACTGCAAAACTTGACTGCAGTGACAGTAGG AACCAACACCAAGAGTAAATCCAAATTAGATTGTTTTTCATGCCTTCAATTGCTCTTTCATAATTGACCAGTAAATAAAT GATTGTATAGTGTAATTGTAGATGATAATGAATTTTGAAATTAATATTTTAGTGATTGACAATGAGATATATAGCAACAC AACCCTATGAATTATAGAGATGACATGAGAGAGCTATCTGCTTTTAAATTGTAATTTTTGTCTCATAGCATGTATGGATA ATTTCTTTTTCCTCATAATTAATTCTGAAATTCATAATTTACTCACAGAAGTTTCTCCTCAAAGTTGATTCTCCCTTTAG AACTATTTATATTAAAATATCCAAGCATACACCAAGGAATAGTTGTAGACTTGTAGTTGCATTCATTCTTAAAAGCTTGA TGTTTACTCTTGGAGAAATCATTTGATAGGCATTGTGTATTATGCACTCAAATACATGTGGTAAGGCATTTATAGAGATA GTAGCAGTTTTAACATGACTTTATTATTTATTTAAGCAACTATAATAGGTTATTTTTATCTAAGAACATCTTGAAGGATT CCGTGTCTTTCATTGATAAACAACTGAGTATTTATATACAAAGGTTCTAGGCTAATAGTTAACTAGAGAATAAATCTAAG AGAGAGATTACATGTGTAATTACATCAAAATAAATCAAGAATAAATATTATAATATTCTATTCTAACACATCTAATCTTA TTCTCATGTAAACATTTTTGAAATTGACAGTAATTTAGTATGCTTAGTGATTCTAGTTTGGGATGGTTTAAAATTGTCAA AATTGAAGATACACAGTATGTGCGTGCTGCTGAGGGTGATTTACAGCGGATCGATTTTTCTTTTCTCAGAATCAATTCTG AAATGTAGAAGCTATTCAGTATTCACAGACGTTCCCCCTAAATTGATTGTGACTTTAGAATCAATTATAGAAGAATTTCA AAACATGCACTTATAAATGATATGTATGTTGCAGATGCCCTGAATGTGATGGAGCAGGGTTTGTTCGGAAGTCTGGGAAG ACATTGAGAGCCAATGCAGCGCGAAAGGATCAAACTCAGATTGTTTGTGCTAACTGCAATGGTTTGGGCAAACTTAACCA AATTGACAAATAAACAGATTCACCTGCTTTTCTCTTCTCCTCTTGTTTTCATTTGCAGTTATTAAAGGTTTTGCTCCCCT CCTTGTATTTATTCCCTTGAGATGAACATCATAAGTGTCATGTTTGGAGGGAAAGACACAATTTTCCTTGTTCAGAAGCT GAAACTTTGCATTACAAGCCTAAATTGTTTTTCTCTCTCCCAGATCATGATATCATGGTGTTCCTACAAAGATTCCAATA ATTTTTTACTATGATCTTAAATATGATCTTGATGTTCTTTCGCCTATTTTTGACTGAGATCTGATTAAAATAAATTCTAT ATATTTTTAAATAGAATATTACATCTATAACACTATTAGTGTGTGTGTGTTTGGATATAACTTGAGTTAATGTGAAAGCA CATTCATCTCAATCTATCAATTCAGTTCTTTTCACATTTTGACTCGAACTGGGTGTTAACATGAAGGTATCCAAACATAC TAACTATATAGGTATGAATATGTGCCTTGATAAATTACATTCAGGGACATACCCCAAACCAGCACATAGGAGAATCTAAT ACCCCAAACCTTGAGGTGGCATAAAGCAGGATGAAGAGAAGGATCTGAAGAGTCAATGGCAAAACCAACGTAGAGGAAAA TGAACATGCAAGCAAAACAAAGCAATAGAAGAAGTTGCTGAAAATTAAATTCTACAGTCTCCAAATAGTAGTTTTCTATT TTTTTTTTCTTCATCGGAAAGTGAGTAGTTTTATGCTAAAGTGGGCATTTCGTAAGATTTCTATGCTAAAAGTACTTAAA ATCAGAAACATTAAAGCCATAATCCTATAAAATAAGCTCTTGTTTCAATAAGGAAAGTTCCAAAAAAGTGATACTGATAA CCCCAATTTTGGGAGGTAAATAACCAAGTCAATATAATACTAGTGTTCTTTACCCGTGCGTTGCACAGCGATTAAATTTA TTGTAAAGATGAATCAGTAGAAATATGTTTTAACTTAGTTAATTAGGCTCTTTTTAGTAAGTTGAACATATATGAAACCG AACATATGTTACAAACATGTAGATGAGTGGACCACAGTAAATATATTAATTTGATGAGGTTGTATAGACCTCATAATGGC AACACTTGAATAGTAATAAGAACTCAGTTTTTAAGGAATGCATTACATTGAAATTGAAATAAGATAAACATAACAATGAT AACAACATGAACCCTTATTAGAAGTTGTAGTCCATGATTAATGATAAAAAATTTATAACCAATCTTGTTGTCAATAAAGC ATATTTGAGCTATAGAACCTGATCAATTGATGTGTCCTTGATAGCGCATAAGCAAGACTGGGTTATAAGGAACAACAAAA CCATTATCGAGAGGAACTCCTTTCTTCAAAATTGTAATCCCAGTTCTTCTTCTTTTATAAATTGGATAACCATAATCATC AACTATTGTGCAATTCTGAATTTTTTTTGAAAAGTGTTTAGAACACTTTCCATCGACCATGCAAACTGACTTAGGGTCAA CAACACCACATGGACCATGCATCATGTATGATGATATTGCCTTGTATAAATTTGGATAAATTTTAGGATCATGAAGCTCT GTAGAAACATGTTTGTCTATATCCTCAATTTTTTTAATTTTGTGTTGAGGTTGAAGCCACAAAAGTATGTGTGGGGGCAG CTTCTTCTATGAGAGGATTAAAAAG
CDS sequence (LotjaGi1g1v0087600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCCCTGATTCCCCTGCATACTATCATTCCCAGAAACACCACCGTTTCCAAAACTGGACTCTCATCTGCAGGCTT AACTGGTGTGCCATGTAGCAGGATTCAGAAGAACAAGAATAGAACTTTAACAGTGGTTTCTGCCGTTGGAGATGTGTCTG CTGATGGTAACACTTACCTCATTGCTGGTGCTATTGCTGTGGCTCTGGTTGGAACAGCATTTCCTATCCTCTTCTCTCGC AAAGACACATGCCCTGAATGTGATGGAGCAGGGTTTGTTCGGAAGTCTGGGAAGACATTGAGAGCCAATGCAGCGCGAAA GGATCAAACTCAGATTGTTTGTGCTAACTGCAATGGTTTGGGCAAACTTAACCAAATTGACAAATAA
Protein sequence (LotjaGi1g1v0087600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLIPLHTIIPRNTTVSKTGLSSAGLTGVPCSRIQKNKNRTLTVVSAVGDVSADGNTYLIAGAIAVALVGTAFPILFSR KDTCPECDGAGFVRKSGKTLRANAARKDQTQIVCANCNGLGKLNQIDK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 58 | 58 | - | – | |
| PANTHER | 1 | 128 | 128 | 1.6E-58 | – | |
| TMHMM | 56 | 78 | 23 | - | – | |
| Phobius | 59 | 78 | 20 | - | – | |
| SUPERFAMILY | 78 | 123 | 46 | 4.05E-5 | ||
| Phobius | 79 | 128 | 50 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0087600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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