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LotjaGi1g1v0088000.1

Overview

Field Value
Gene ID LotjaGi1g1v0088000
Transcript ID LotjaGi1g1v0088000.1
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT2G39730.1 rubisco activase; Swiss-Prot: sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic; TrEMBL-Plants: tr|A0A0S3RKS8|A0A0S3RKS8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0088000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:12770360..12775326) extracted from Lotus japonicus Gifu genome v1.2.

GATAAACACAAATTTTCTTCCAGTGAAACAAACAGAAGCTAATGATTGGAGTTGATGAGATGAGCTTGACTGCTCTAGCA GCTTTGTGTGGTAATAAGCTCTCCTTGAAACTGATAGAGCATGCAGGAAAATGATTCAATCCAAACCGCAAAATCTATGA CTCTAAGTGGCTGAGATCTTCCAGGCACTATTTTGTTGCCACGTGGCTTTAAAGCCATCCTCATTGTGTGGACGTTATGG ATTCACAACTAATCTTTTGGATATGAATTTCTGTACACTCAACTCAGCCACTGCTATAAGTTCTGCTTCCCTGTGGTTTA TTCTGCTTGCCTCAAGGGACCATATCTGCATTTGTTTGAAGTAGCTCTCTTTCTCTACACAGTCATGGCTGCCTCAGTCT CTACTATTGGAGCTGTCAATGGAACTCCAGTATGATGTTTTTCCCTTCTTTTTAACCTTATTAGTTGCTCTTGTCCTAAC TTCTCAAATCATTCTTAGGTAAAATTTAGTTACTAATATAGATATGTTTACATTATTTAGATGCCAATAACAAGTCTGGT AGACCTTATTTATCTAATGGAGCATGGTCATTATTTTGTGTGTCTATAAATATTACTGACTCTAACGTGAACAGACTTTT ATCTCGATCCATAAAAAGAATTTCACTCGCTTTTTACCGGGAAGTGAGTGCTAGTATCTCTTTAGCTTAGTGCGTGCGTA TTCCAAACATAGTCTTTGAAGTTCTTGATCTAAGAAAATGGAATCCTACTTTCCAATACAATGAAAAGCATTTGTGTCAC AAACCATATACACACTAAGACGTTTTGAAGTACTTGTTTAATATTTTTTTGTATGAGTATGTTACATTTTCAAAACCAAG ATTAGAATAAATTTGAAGAATGAGTTTTTTATAGGAAAAAGAAACCTACTCTTAAAACTTTTTCCCCTCATTTATACTGG CTTTTGTTGCTGTTCTTGTATAATGTTGATGACTTGATTGTAAGCTCACTATTAGTAATTTGGTGTTGTGTAATATAAAA AACACAATTATGATACCAAGGTAGAGAATAATTACTATGTGAGAGGCAAGCTAATTGGAAATTGGAACCAATGATAAGTG AGTGCACTTTGGACATGGATCCCCCCTACCATAGGAAAATCCTAAATTTCAGTCAGTGAAGGAATCTGACGGTCGTTTGA TCTAAGTGGAATATTTTAACCATCGGATCTTAATTGAATGACTCTGAATCACTAGATGCGTGAATTTAGGATTTTTCTGA CTACAGTTAGAAACCAAATCCACTATCTAAATAGTTTGAATAGTAATAAAGGGTTTTTGTACTGTGATATTGCAGCTCAG CTTGAATAGCTCTGGAGCTGGTGTTTCAGTTCCTAGTTCAGCCTTCTTTGGTAGCAGCTTGAGGAAGGTTAACTCAAGGC TTCCAAACTCCAAGGTTTCCAATGGAAGTTTCAAAATTGTTGCTGCAGAGATTGATGAGAGCCAGCAGACTGACAAGGAC AGATGGAAGGGTTTGGCCTATGATATATCAGATGACCAGCAAGACATCACAAGGGGGAAGGGCATGGTTGATCCCCTCTT CCAAGCTCCACAAGGTGCTGGAACTCACTATGCAGTCATGAGCTCTTATGAGTACCTTAGCACTGGACTTAGACAGTGAG TGACACAAGATACTAGAAATTCTATACCAAAATAGTGTTTGCTTAGGTATCGAGTTCTAGTTGTGTGTATGAAAAATACC CTCCCACCAAGATGTGGATGTTCCCAACTTGAACAAGAGTATACCTGCATTAGACAAAAAAAAGTGTTTGCTTGTCATTT TCTTTAGTTGAAAAAAAAAGTGTGAAGTCCCCTTTTGATCTAAACCTGGTCATGATGATGTTGTTTCAGGTACAACTTTG ACAACACCATGGATGGGTTTTACATTGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCATGACC CTGCCCAACATCAAGGTATGTAAACAGATACATGATTCCTGCGTATACTTCCTCAAGGATTTGATAAACTAGTGAATCAT GTTTAATATTTTCATGATCTTTTTTCCAGGTTCCTCTCATTCTTGGTATCTGGGGAGGCAAAGGTCAAGGAAAATCTTTC CAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAAGTGAGTTATTGTATTATTAATTCTAGGCTTTCCTTAATGATCTTT ACTACTATAGAACACATCAGCTATTTCTGTTTGCAACCAGTTCAAAATTGAAAATCTCCCTTGGAATAATTCTTATATGA ACATATGTTTATTAGGTACAGCCAATCAATACTCAGGAATTATTAAATTAATAATGTTTTGACACTTCTAAGTCAAAAGT GAGTGAGTCATTTGTAAAGTAAGTCATTAATATGCTGGTCAACAAATCTATGGTCAAGTTTTTAAGAAGCACCATAATTT GTCATACATGTACATATATATATCATAATATATGAACACAATCAAAATCGCTATTTCTAAATCAATGGATGTGATGATTT ACTTGACCCTTTAAAGTGGCTCAGGAGCAAAATCCATAATTGAAGACATCAAAACTGATGTTAAAGTTGTTTTAATATCA TATGGAACTTGTACTTAATAGACTAATGGAGGCATTGCTGGTATCTTTTGTGCTTAATATTATCGTAATAGACTCATGTT TGGAAATCCTTCTACAATTGATTCTAAAGTTGAAAAGTTATGGAAAGAAGTTTTGATTGTAAGAAGTAATTCTGAGAAAA AAAGAAGCTAATTCAAACATGTTATTGATATTTCTTTGCTGCTTACTAACTTCTAGTCCCTATGATTTTCTTATTACAGC CCCATCATGATGAGTGCTGGAGAGCTAGAAAGTGGAAATGCAGGAGAGCCTGCAAAACTGATCAGGCAAAGATACCGTGA AGCTGCTGATATAATCAAGAAGGGGAAGATGTGCTGCCTCTTCATCAACGATCTTGATGCAGGAGCAGGTCGTATGGGTG GAACCACACAGTACACTGTCAACAACCAGATGGTGAACGCCACCCTCATGAACATTGCTGACAACCCGACGAACGTGCAG CTCCCTGGAATGTACAACAAGGAAGATAACCCGCGCGTGCCAATTATTGTCACTGGTAACGATTTCTCAACACTCTACGC TCCTCTCATCCGTGACGGGCGTATGGAGAAGTTCTACTGGGCACCTACGAGGGATGATCGTGTTGGTGTCTGCAAGGGGA TTTTCCGCACTGACAATGTGCCTGAAGAAGATGTTGTCAAGATTGTTGACACCTTCCCTGGCCAATCCATTGGTAAGTTC TCTCCCTGCTATAAATTGTTTACCCAAACATGGACTGTTGAGACTATGAGACTAATCGGCATTCCATGTATGATTGCAGA TTTCTTTGGTGCACTCAGGGCAAGAGTATACGATGACGAAGTAAGGAAGTGGATTTCTGGTGTTGGTATTGAAACAATTG GGAAGAAGCTTGTGAACTCAAAGGAAGGACCTCCAGTCTTTGAGCAGCCCAAGATGACTTTGGCGAAGCTCTTGGAGTAT GGTAACATGCTTGTCCAAGAGCAAGAGAATGTGAAGAGAGTCCAGCTTGCAGACAAGTACTTGAACGAGGCTGCTCTTGG TGATGCTAATGAAGATTCTATTAACAGAGGAACTTTCTACGGTTAGATCCCTTTGTCTTGAGTCCTTGATTGGAACTTCA CATGTAGCTTTATATTAATTAGCCAATTTGACATGATATGATTGAATGTTAACAACCTACAACCAAACGAATACATTAAC CAGCACGAGGTTATTTTAGCTTAAGTATAAGTCTTGGGTTCGAGTCATGCCCAAGTTAAATCTTGATAGGAAGAGCTTTG TCGCTCATCATGGTCCTACCTGACTCGAACATGAATAAACAGTGGTTCAAACCAAAAGAAAGCTAACAATTTAAAACTTT TTGAATCAGTTTTTTTTTCCTAACCAATTAAAGGCTATAGCACTTAGCTAGAACTTAGAAGCTACAGTAAAAATCTTCTC CCGGAATTGATTTTGACTTTATAATAACTGTAGAAAATTTTCTAAACATGCTTTAAATATACCTAGGTCTAAACTTTTTG TTTGTTTCATTTTTTATGCAGGCAAAGCAGCCCAGCAAGTAAATGTTCCTGTTCCTGAAGGTTGTACTGATCCAAATGCC AAAAACTTCGACCCAACTGCTAGAAGTGATGATGGAACATGCTTATACACATTCTAGGAATCTATGCATTCTCCACCTAT TAGGTTAAAGGAGAAGCTGAGACTTGAGATATTCAAATAAATTTTTATCTTGTTCATATATTGGATTGTCAGACTCTGTG GTTTTGAGTTGATTGTGTAAAATGTTATCTTGTTTTTCTCATTTTGCTAATGCATGTCTACGTTCTTCTCCTCTTTCTCT CAATCCCAGTAAACTCCAAGCATGAAAGATCATTCTTTGATGGGTTCAACTTCAGCTAGGAACATGAGCATAAACGGTAG TGTAGTGATTGAGCACAACGACCTCCTCCGCCTCATAACAACACTCTATACTTGTCAGTAAGGTCGTCACAAGATCCGTC ACTAACTTTGTTACAAATAATCGACACAGAATCCGTCACTAAATTTTGTCAAAGAAATCTGTCACTAATAAATCGGTCAC AGGATCCATCACTAAATGCTTAGGTTTTCATTTCTAGGTTTTATTTATTTTGAGGGTGGTTTAGTCTAGGATTTTGAAGG ATGAAGAGAAGATGAAAATGAAGATGAAGATGGGGATGAAGGATTAGAGATTACTAGTTATTTAGGTGTCATTTAATTCT GATATTTTTAATTAATAAATTTATTTTTACTAGTTATTTATGTGTCATTTAATTCATATATTTTTTAATGAATAAATTTA TTTTCAC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0088000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGCCTCAGTCTCTACTATTGGAGCTGTCAATGGAACTCCACTCAGCTTGAATAGCTCTGGAGCTGGTGTTTCAGT TCCTAGTTCAGCCTTCTTTGGTAGCAGCTTGAGGAAGGTTAACTCAAGGCTTCCAAACTCCAAGGTTTCCAATGGAAGTT TCAAAATTGTTGCTGCAGAGATTGATGAGAGCCAGCAGACTGACAAGGACAGATGGAAGGGTTTGGCCTATGATATATCA GATGACCAGCAAGACATCACAAGGGGGAAGGGCATGGTTGATCCCCTCTTCCAAGCTCCACAAGGTGCTGGAACTCACTA TGCAGTCATGAGCTCTTATGAGTACCTTAGCACTGGACTTAGACAGTACAACTTTGACAACACCATGGATGGGTTTTACA TTGCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCATGACCCTGCCCAACATCAAGGTTCCTCTC ATTCTTGGTATCTGGGGAGGCAAAGGTCAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAACCC CATCATGATGAGTGCTGGAGAGCTAGAAAGTGGAAATGCAGGAGAGCCTGCAAAACTGATCAGGCAAAGATACCGTGAAG CTGCTGATATAATCAAGAAGGGGAAGATGTGCTGCCTCTTCATCAACGATCTTGATGCAGGAGCAGGTCGTATGGGTGGA ACCACACAGTACACTGTCAACAACCAGATGGTGAACGCCACCCTCATGAACATTGCTGACAACCCGACGAACGTGCAGCT CCCTGGAATGTACAACAAGGAAGATAACCCGCGCGTGCCAATTATTGTCACTGGTAACGATTTCTCAACACTCTACGCTC CTCTCATCCGTGACGGGCGTATGGAGAAGTTCTACTGGGCACCTACGAGGGATGATCGTGTTGGTGTCTGCAAGGGGATT TTCCGCACTGACAATGTGCCTGAAGAAGATGTTGTCAAGATTGTTGACACCTTCCCTGGCCAATCCATTGATTTCTTTGG TGCACTCAGGGCAAGAGTATACGATGACGAAGTAAGGAAGTGGATTTCTGGTGTTGGTATTGAAACAATTGGGAAGAAGC TTGTGAACTCAAAGGAAGGACCTCCAGTCTTTGAGCAGCCCAAGATGACTTTGGCGAAGCTCTTGGAGTATGGTAACATG CTTGTCCAAGAGCAAGAGAATGTGAAGAGAGTCCAGCTTGCAGACAAGTACTTGAACGAGGCTGCTCTTGGTGATGCTAA TGAAGATTCTATTAACAGAGGAACTTTCTACGGCAAAGCAGCCCAGCAAGTAAATGTTCCTGTTCCTGAAGGTTGTACTG ATCCAAATGCCAAAAACTTCGACCCAACTGCTAGAAGTGATGATGGAACATGCTTATACACATTCTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0088000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAASVSTIGAVNGTPLSLNSSGAGVSVPSSAFFGSSLRKVNSRLPNSKVSNGSFKIVAAEIDESQQTDKDRWKGLAYDIS DDQQDITRGKGMVDPLFQAPQGAGTHYAVMSSYEYLSTGLRQYNFDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPL ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGI FRTDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGIETIGKKLVNSKEGPPVFEQPKMTLAKLLEYGNM LVQEQENVKRVQLADKYLNEAALGDANEDSINRGTFYGKAAQQVNVPVPEGCTDPNAKNFDPTARSDDGTCLYTF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32429:SF15
1 475 475 5.6E-293 –
PANTHER
PTHR32429
1 475 475 5.6E-293 –
Gene3D
G3DSA:3.40.50.300
124 308 185 3.6E-43 –
SUPERFAMILY
SSF52540
129 335 207 6.56E-21
IPR027417
Pfam
PF00004
164 305 142 6.0E-15
IPR003959
Gene3D
G3DSA:1.10.8.1070
309 421 113 1.5E-48 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0088000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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