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LotjaGi1g1v0088000.4

Overview

Field Value
Gene ID LotjaGi1g1v0088000
Transcript ID LotjaGi1g1v0088000.4
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT2G39730.2 rubisco activase; Swiss-Prot: sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic; TrEMBL-Plants: tr|I1M841|I1M841_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0088000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:12771666..12774198) extracted from Lotus japonicus Gifu genome v1.2.

CTAAATAGTTTGAATAGTAATAAAGGGTTTTTGTACTGTGATATTGCAGCTCAGCTTGAATAGCTCTGGAGCTGGTGTTT CAGTTCCTAGTTCAGCCTTCTTTGGTAGCAGCTTGAGGAAGGTTAACTCAAGGCTTCCAAACTCCAAGGTTTCCAATGGA AGTTTCAAAATTGTTGCTGCAGAGATTGATGAGAGCCAGCAGACTGACAAGGACAGATGGAAGGGTTTGGCCTATGATAT ATCAGATGACCAGCAAGACATCACAAGGGGGAAGGGCATGGTTGATCCCCTCTTCCAAGCTCCACAAGGTGCTGGAACTC ACTATGCAGTCATGAGCTCTTATGAGTACCTTAGCACTGGACTTAGACAGTGAGTGACACAAGATACTAGAAATTCTATA CCAAAATAGTGTTTGCTTAGGTATCGAGTTCTAGTTGTGTGTATGAAAAATACCCTCCCACCAAGATGTGGATGTTCCCA ACTTGAACAAGAGTATACCTGCATTAGACAAAAAAAAGTGTTTGCTTGTCATTTTCTTTAGTTGAAAAAAAAAGTGTGAA GTCCCCTTTTGATCTAAACCTGGTCATGATGATGTTGTTTCAGGTACAACTTTGACAACACCATGGATGGGTTTTACATT GCTCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCATGACCCTGCCCAACATCAAGGTATGTAAACA GATACATGATTCCTGCGTATACTTCCTCAAGGATTTGATAAACTAGTGAATCATGTTTAATATTTTCATGATCTTTTTTC CAGGTTCCTCTCATTCTTGGTATCTGGGGAGGCAAAGGTCAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGAT GGGAATCAAGTGAGTTATTGTATTATTAATTCTAGGCTTTCCTTAATGATCTTTACTACTATAGAACACATCAGCTATTT CTGTTTGCAACCAGTTCAAAATTGAAAATCTCCCTTGGAATAATTCTTATATGAACATATGTTTATTAGGTACAGCCAAT CAATACTCAGGAATTATTAAATTAATAATGTTTTGACACTTCTAAGTCAAAAGTGAGTGAGTCATTTGTAAAGTAAGTCA TTAATATGCTGGTCAACAAATCTATGGTCAAGTTTTTAAGAAGCACCATAATTTGTCATACATGTACATATATATATCAT AATATATGAACACAATCAAAATCGCTATTTCTAAATCAATGGATGTGATGATTTACTTGACCCTTTAAAGTGGCTCAGGA GCAAAATCCATAATTGAAGACATCAAAACTGATGTTAAAGTTGTTTTAATATCATATGGAACTTGTACTTAATAGACTAA TGGAGGCATTGCTGGTATCTTTTGTGCTTAATATTATCGTAATAGACTCATGTTTGGAAATCCTTCTACAATTGATTCTA AAGTTGAAAAGTTATGGAAAGAAGTTTTGATTGTAAGAAGTAATTCTGAGAAAAAAAGAAGCTAATTCAAACATGTTATT GATATTTCTTTGCTGCTTACTAACTTCTAGTCCCTATGATTTTCTTATTACAGCCCCATCATGATGAGTGCTGGAGAGCT AGAAAGTGGAAATGCAGGAGAGCCTGCAAAACTGATCAGGCAAAGATACCGTGAAGCTGCTGATATAATCAAGAAGGGGA AGATGTGCTGCCTCTTCATCAACGATCTTGATGCAGGAGCAGGTCGTATGGGTGGAACCACACAGTACACTGTCAACAAC CAGATGGTGAACGCCACCCTCATGAACATTGCTGACAACCCGACGAACGTGCAGCTCCCTGGAATGTACAACAAGGAAGA TAACCCGCGCGTGCCAATTATTGTCACTGGTAACGATTTCTCAACACTCTACGCTCCTCTCATCCGTGACGGGCGTATGG AGAAGTTCTACTGGGCACCTACGAGGGATGATCGTGTTGGTGTCTGCAAGGGGATTTTCCGCACTGACAATGTGCCTGAA GAAGATGTTGTCAAGATTGTTGACACCTTCCCTGGCCAATCCATTGGTAAGTTCTCTCCCTGCTATAAATTGTTTACCCA AACATGGACTGTTGAGACTATGAGACTAATCGGCATTCCATGTATGATTGCAGATTTCTTTGGTGCACTCAGGGCAAGAG TATACGATGACGAAGTAAGGAAGTGGATTTCTGGTGTTGGTATTGAAACAATTGGGAAGAAGCTTGTGAACTCAAAGGAA GGACCTCCAGTCTTTGAGCAGCCCAAGATGACTTTGGCGAAGCTCTTGGAGTATGGTAACATGCTTGTCCAAGAGCAAGA GAATGTGAAGAGAGTCCAGCTTGCAGACAAGTACTTGAACGAGGCTGCTCTTGGTGATGCTAATGAAGATTCTATTAACA GAGGAACTTTCTACGGTTAGATCCCTTTGTCTTGAGTCCTTGATTGGAACTTCACATGTAGCTTTATATTAATTAGCCAA TTTGACATGATATGATTGAATGTTAACAACCTACAACCAAACGAATACATTAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0088000.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTGATCCCCTCTTCCAAGCTCCACAAGGTGCTGGAACTCACTATGCAGTCATGAGCTCTTATGAGTACCTTAGCAC TGGACTTAGACAGTACAACTTTGACAACACCATGGATGGGTTTTACATTGCTCCTGCTTTCATGGACAAGCTTGTTGTTC ACATCACCAAGAACTTCATGACCCTGCCCAACATCAAGGTTCCTCTCATTCTTGGTATCTGGGGAGGCAAAGGTCAAGGA AAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCCATCATGATGAGTGCTGGAGAGCTAGAAAGTGG AAATGCAGGAGAGCCTGCAAAACTGATCAGGCAAAGATACCGTGAAGCTGCTGATATAATCAAGAAGGGGAAGATGTGCT GCCTCTTCATCAACGATCTTGATGCAGGAGCAGGTCGTATGGGTGGAACCACACAGTACACTGTCAACAACCAGATGGTG AACGCCACCCTCATGAACATTGCTGACAACCCGACGAACGTGCAGCTCCCTGGAATGTACAACAAGGAAGATAACCCGCG CGTGCCAATTATTGTCACTGGTAACGATTTCTCAACACTCTACGCTCCTCTCATCCGTGACGGGCGTATGGAGAAGTTCT ACTGGGCACCTACGAGGGATGATCGTGTTGGTGTCTGCAAGGGGATTTTCCGCACTGACAATGTGCCTGAAGAAGATGTT GTCAAGATTGTTGACACCTTCCCTGGCCAATCCATTGATTTCTTTGGTGCACTCAGGGCAAGAGTATACGATGACGAAGT AAGGAAGTGGATTTCTGGTGTTGGTATTGAAACAATTGGGAAGAAGCTTGTGAACTCAAAGGAAGGACCTCCAGTCTTTG AGCAGCCCAAGATGACTTTGGCGAAGCTCTTGGAGTATGGTAACATGCTTGTCCAAGAGCAAGAGAATGTGAAGAGAGTC CAGCTTGCAGACAAGTACTTGAACGAGGCTGCTCTTGGTGATGCTAATGAAGATTCTATTAACAGAGGAACTTTCTACGG TTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0088000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVDPLFQAPQGAGTHYAVMSSYEYLSTGLRQYNFDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQG KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV NATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPEEDV VKIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGIETIGKKLVNSKEGPPVFEQPKMTLAKLLEYGNMLVQEQENVKRV QLADKYLNEAALGDANEDSINRGTFYG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32429:SF8
1 347 347 8.1E-238 –
PANTHER
PTHR32429
1 347 347 8.1E-238 –
Gene3D
G3DSA:3.40.50.300
33 217 185 1.7E-43 –
SUPERFAMILY
SSF52540
38 245 208 2.43E-21
IPR027417
Pfam
PF00004
73 214 142 3.1E-15
IPR003959
Gene3D
G3DSA:1.10.8.1070
218 330 113 8.5E-49 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0088000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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