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LotjaGi1g1v0088000.5

Overview

Field Value
Gene ID LotjaGi1g1v0088000
Transcript ID LotjaGi1g1v0088000.5
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT2G39730.1 rubisco activase; Swiss-Prot: sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic; TrEMBL-Plants: tr|I1M841|I1M841_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0088000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:12771672..12774656) extracted from Lotus japonicus Gifu genome v1.2.

AGTTTGAATAGTAATAAAGGGTTTTTGTACTGTGATATTGCAGCTCAGCTTGAATAGCTCTGGAGCTGGTGTTTCAGTTC CTAGTTCAGCCTTCTTTGGTAGCAGCTTGAGGAAGGTTAACTCAAGGCTTCCAAACTCCAAGGTTTCCAATGGAAGTTTC AAAATTGTTGCTGCAGAGATTGATGAGAGCCAGCAGACTGACAAGGACAGATGGAAGGGTTTGGCCTATGATATATCAGA TGACCAGCAAGACATCACAAGGGGGAAGGGCATGGTTGATCCCCTCTTCCAAGCTCCACAAGGTGCTGGAACTCACTATG CAGTCATGAGCTCTTATGAGTACCTTAGCACTGGACTTAGACAGTGAGTGACACAAGATACTAGAAATTCTATACCAAAA TAGTGTTTGCTTAGGTATCGAGTTCTAGTTGTGTGTATGAAAAATACCCTCCCACCAAGATGTGGATGTTCCCAACTTGA ACAAGAGTATACCTGCATTAGACAAAAAAAAGTGTTTGCTTGTCATTTTCTTTAGTTGAAAAAAAAAGTGTGAAGTCCCC TTTTGATCTAAACCTGGTCATGATGATGTTGTTTCAGGTACAACTTTGACAACACCATGGATGGGTTTTACATTGCTCCT GCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCATGACCCTGCCCAACATCAAGGTATGTAAACAGATACA TGATTCCTGCGTATACTTCCTCAAGGATTTGATAAACTAGTGAATCATGTTTAATATTTTCATGATCTTTTTTCCAGGTT CCTCTCATTCTTGGTATCTGGGGAGGCAAAGGTCAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAAT CAAGTGAGTTATTGTATTATTAATTCTAGGCTTTCCTTAATGATCTTTACTACTATAGAACACATCAGCTATTTCTGTTT GCAACCAGTTCAAAATTGAAAATCTCCCTTGGAATAATTCTTATATGAACATATGTTTATTAGGTACAGCCAATCAATAC TCAGGAATTATTAAATTAATAATGTTTTGACACTTCTAAGTCAAAAGTGAGTGAGTCATTTGTAAAGTAAGTCATTAATA TGCTGGTCAACAAATCTATGGTCAAGTTTTTAAGAAGCACCATAATTTGTCATACATGTACATATATATATCATAATATA TGAACACAATCAAAATCGCTATTTCTAAATCAATGGATGTGATGATTTACTTGACCCTTTAAAGTGGCTCAGGAGCAAAA TCCATAATTGAAGACATCAAAACTGATGTTAAAGTTGTTTTAATATCATATGGAACTTGTACTTAATAGACTAATGGAGG CATTGCTGGTATCTTTTGTGCTTAATATTATCGTAATAGACTCATGTTTGGAAATCCTTCTACAATTGATTCTAAAGTTG AAAAGTTATGGAAAGAAGTTTTGATTGTAAGAAGTAATTCTGAGAAAAAAAGAAGCTAATTCAAACATGTTATTGATATT TCTTTGCTGCTTACTAACTTCTAGTCCCTATGATTTTCTTATTACAGCCCCATCATGATGAGTGCTGGAGAGCTAGAAAG TGGAAATGCAGGAGAGCCTGCAAAACTGATCAGGCAAAGATACCGTGAAGCTGCTGATATAATCAAGAAGGGGAAGATGT GCTGCCTCTTCATCAACGATCTTGATGCAGGAGCAGGTCGTATGGGTGGAACCACACAGTACACTGTCAACAACCAGATG GTGAACGCCACCCTCATGAACATTGCTGACAACCCGACGAACGTGCAGCTCCCTGGAATGTACAACAAGGAAGATAACCC GCGCGTGCCAATTATTGTCACTGGTAACGATTTCTCAACACTCTACGCTCCTCTCATCCGTGACGGGCGTATGGAGAAGT TCTACTGGGCACCTACGAGGGATGATCGTGTTGGTGTCTGCAAGGGGATTTTCCGCACTGACAATGTGCCTGAAGAAGAT GTTGTCAAGATTGTTGACACCTTCCCTGGCCAATCCATTGGTAAGTTCTCTCCCTGCTATAAATTGTTTACCCAAACATG GACTGTTGAGACTATGAGACTAATCGGCATTCCATGTATGATTGCAGATTTCTTTGGTGCACTCAGGGCAAGAGTATACG ATGACGAAGTAAGGAAGTGGATTTCTGGTGTTGGTATTGAAACAATTGGGAAGAAGCTTGTGAACTCAAAGGAAGGACCT CCAGTCTTTGAGCAGCCCAAGATGACTTTGGCGAAGCTCTTGGAGTATGGTAACATGCTTGTCCAAGAGCAAGAGAATGT GAAGAGAGTCCAGCTTGCAGACAAGTACTTGAACGAGGCTGCTCTTGGTGATGCTAATGAAGATTCTATTAACAGAGGAA CTTTCTACGGTTAGATCCCTTTGTCTTGAGTCCTTGATTGGAACTTCACATGTAGCTTTATATTAATTAGCCAATTTGAC ATGATATGATTGAATGTTAACAACCTACAACCAAACGAATACATTAACCAGCACGAGGTTATTTTAGCTTAAGTATAAGT CTTGGGTTCGAGTCATGCCCAAGTTAAATCTTGATAGGAAGAGCTTTGTCGCTCATCATGGTCCTACCTGACTCGAACAT GAATAAACAGTGGTTCAAACCAAAAGAAAGCTAACAATTTAAAACTTTTTGAATCAGTTTTTTTTTCCTAACCAATTAAA GGCTATAGCACTTAGCTAGAACTTAGAAGCTACAGTAAAAATCTTCTCCCGGAATTGATTTTGACTTTATAATAACTGTA GAAAATTTTCTAAACATGCTTTAAATATACCTAGGTCTAAACTTTTTGTTTGTTTCATTTTTTATGCAGGCAAAGCAGCC CAGCAAGTAAATGTTCCTGTTCCTGAAGGTTGTACTGATCCAAATGCCAAAAACTTCGACCCAACTGCTAGAAGTGATGA TGGAACATGCTTATACACATTCTAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0088000.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTGATCCCCTCTTCCAAGCTCCACAAGGTGCTGGAACTCACTATGCAGTCATGAGCTCTTATGAGTACCTTAGCAC TGGACTTAGACAGTACAACTTTGACAACACCATGGATGGGTTTTACATTGCTCCTGCTTTCATGGACAAGCTTGTTGTTC ACATCACCAAGAACTTCATGACCCTGCCCAACATCAAGGTTCCTCTCATTCTTGGTATCTGGGGAGGCAAAGGTCAAGGA AAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCCATCATGATGAGTGCTGGAGAGCTAGAAAGTGG AAATGCAGGAGAGCCTGCAAAACTGATCAGGCAAAGATACCGTGAAGCTGCTGATATAATCAAGAAGGGGAAGATGTGCT GCCTCTTCATCAACGATCTTGATGCAGGAGCAGGTCGTATGGGTGGAACCACACAGTACACTGTCAACAACCAGATGGTG AACGCCACCCTCATGAACATTGCTGACAACCCGACGAACGTGCAGCTCCCTGGAATGTACAACAAGGAAGATAACCCGCG CGTGCCAATTATTGTCACTGGTAACGATTTCTCAACACTCTACGCTCCTCTCATCCGTGACGGGCGTATGGAGAAGTTCT ACTGGGCACCTACGAGGGATGATCGTGTTGGTGTCTGCAAGGGGATTTTCCGCACTGACAATGTGCCTGAAGAAGATGTT GTCAAGATTGTTGACACCTTCCCTGGCCAATCCATTGATTTCTTTGGTGCACTCAGGGCAAGAGTATACGATGACGAAGT AAGGAAGTGGATTTCTGGTGTTGGTATTGAAACAATTGGGAAGAAGCTTGTGAACTCAAAGGAAGGACCTCCAGTCTTTG AGCAGCCCAAGATGACTTTGGCGAAGCTCTTGGAGTATGGTAACATGCTTGTCCAAGAGCAAGAGAATGTGAAGAGAGTC CAGCTTGCAGACAAGTACTTGAACGAGGCTGCTCTTGGTGATGCTAATGAAGATTCTATTAACAGAGGAACTTTCTACGG CAAAGCAGCCCAGCAAGTAAATGTTCCTGTTCCTGAAGGTTGTACTGATCCAAATGCCAAAAACTTCGACCCAACTGCTA GAAGTGATGATGGAACATGCTTATACACATTCTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0088000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVDPLFQAPQGAGTHYAVMSSYEYLSTGLRQYNFDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQG KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV NATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPEEDV VKIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGIETIGKKLVNSKEGPPVFEQPKMTLAKLLEYGNMLVQEQENVKRV QLADKYLNEAALGDANEDSINRGTFYGKAAQQVNVPVPEGCTDPNAKNFDPTARSDDGTCLYTF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32429:SF15
1 384 384 2.9E-257 –
PANTHER
PTHR32429
1 384 384 2.9E-257 –
Gene3D
G3DSA:3.40.50.300
33 217 185 2.2E-43 –
SUPERFAMILY
SSF52540
38 245 208 3.29E-21
IPR027417
Pfam
PF00004
73 214 142 3.9E-15
IPR003959
Gene3D
G3DSA:1.10.8.1070
218 330 113 1.0E-48 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0088000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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