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LotjaGi1g1v0091600.1

Overview

Field Value
Gene ID LotjaGi1g1v0091600
Transcript ID LotjaGi1g1v0091600.1
Lotus japonicus genome version Gifu v1.2
Description Myb transcription factor; TAIR: AT1G22640.1 myb domain protein 3; Swiss-Prot: sp|P81393|MYB08_ANTMA Myb-related protein 308; TrEMBL-Plants: tr|A0A151U1C0|A0A151U1C0_CAJCA Transcription repressor MYB4; Found in the gene: LotjaGi1g1v0091600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:13275653..13277830) extracted from Lotus japonicus Gifu genome v1.2.

AGCTTCCACACACACTCACTCTCTCTAGCTATCAATCAATATATACATTTTTCTAGCGTTTTATCTGCTACAAACTCCCC CAGCCACGTAGAGAAGAGAGATCAAAGAACGAAAATAACAATGAGAAAACCTTGTTGTGACAAAGAAAACATCAACAAAG GTGCTTGGTCGAAGCAAGAAGATCAAAAGCTCATCGATCACATTCGAGTTCATGGTGAAGGCAGTTGGCGCTCCATTCCA AAAGCTGCTGGTTAGTTACTTGATCATCATTATTATCTACCTCATACATACAACAATGCACTTCCTTCCGTTACATTAAG TGGCCAAAACATCTAATAGCATGTTTGGTGTAGCTACTTCTGGCTCTCAAAATCAATTCTGAAATTCAGAAGTCACTCAC ATGAGTTTCTCGCTAGAATTGGTTTGAAATCATTTTTTTTTTTAATAATTCAAAACATAAAAGATATACTAAGTGTGTGT TTTACATGTTGTCATTAACACTCATCCATACTGAATTCAATGAAATAAAATCATGTTTTTCTTTTGTGCTTTGGTATTTT AAAAATTATGTTTGGGATGATACACAATTTTCCAAACAAGCACCAATTCAACATGTGATCATTCAATATAATACATTTTT CAGGGCTGTATCGTTGTGGCAAAAGTTGTAGGCTAAGATGGTTAAACTACTTGCGGCCAGACATCAAACGGGGAATCTTT GCCCAAGATGAAGAAGACCTCATCATCAAGCTCCATGCCCTTCTTGGCAACCGGTACCTTCCTTCTTCTCCAAAGCTCTC AGTGTTTTAAGAGTATTGATTAGAAAGTGTAATTGATTTTTTCACTATCAAGGGATTAAATGTTATACTATAACTAATAA ATAACTTTTTAAGACATTTTAGTCTATGCTTGAATGTTAGTTAAGTGCAATCTTTTTTTTATCACAAGTAAAATAGTTCA TTGATCAATTTCTAGCTTAAAGCGAGTGTTAACATCTATTTGTACTTATCACAATATATATATTCAAACATGTATAATAA TGTGCCATTGTTTATATTAGTGCACCATTGTTTAGTTAGAGAATAACCACCAATAAGCTAGAAAATTAAAAAGCCAGGCT TGTTTCCATTTTTTGTTGATATAAGCAACTTGTTTCCATATTTAATTTCTTAAGTATTCGATCAGTCTAAAATTAACTTG TACATGATCACATCACCAATTAGCTAATAGTGTATGTTTGAATCCCCATGTTACTACAGTTTTGGTAATGAAATTAATTT TGTTGGATGTATATATATGTGTAGGTGGTCACTCATAGCTGGAAGGTTGCCTGGACGTACAGACAATGAGGTGAAGAATT ATTGGAATTCTCACATCCGAAGGAAGCTAATAAAGATGGGAATTGATCCAAATAACCACAAGCTACATCAAAGCCTTCAT CGATCTCATGTCCACCCACTTTCTGTTGCGGATGCATCATCATCAGAGTCCATGAACAAAGAGCAAAAAATCCCTTGCTT CAAATCCTGTGGTACCTCTATTGATCAAATTTCCAGAAATAGTTGTCTTGAAGAAGAAAAAGCAATCATTTCTTCATCTC CTTTGAATCTTGACCTAACCATTGCTTTACCTTCGCCTAACAGGCTTCCTATTGTTGAAGACAAGCTCACGCCAAATTCT AAATCCAAGACCTTGGACATAGATATAGATCTTAATTGTTAAATACTTCTTGGTAGTGTTCCCTTTGGATATATATCATA ACTTAATATATAATCCAAATAAGGAATAACAAGTAGGGTTTTTCTGTAGAATGTTAGTATTTCTTACTACTTTCGTGATC AAATATTCAAATTTGTGCCGTGCACCCACTAGAGAGATTAGTTTTCCCAATATCTCAAATGGATATATATAGATGTCTCA TTAATTTATTTCATGCATATGCTGTATACAGTATATACGTATAGCTTATAGGACAAGGGAAGTTGAACATGATTGAGAGT CTTAAATTTAGTTCATGTATATGGCTAGAAGTGTCCTTTCGATCTATTTCTATACCATGATTGTAAGACTTAAATTTAGT TCATGTATCTGGCCATACAACTACAAGTATCCTTTGTGGAAATGAGATTTGACTCGGGTAAATTAAGTCATCATAATTAT TAATTAAGGTCTGAAATA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0091600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGAAAACCTTGTTGTGACAAAGAAAACATCAACAAAGGTGCTTGGTCGAAGCAAGAAGATCAAAAGCTCATCGATCA CATTCGAGTTCATGGTGAAGGCAGTTGGCGCTCCATTCCAAAAGCTGCTGGGCTGTATCGTTGTGGCAAAAGTTGTAGGC TAAGATGGTTAAACTACTTGCGGCCAGACATCAAACGGGGAATCTTTGCCCAAGATGAAGAAGACCTCATCATCAAGCTC CATGCCCTTCTTGGCAACCGGTGGTCACTCATAGCTGGAAGGTTGCCTGGACGTACAGACAATGAGGTGAAGAATTATTG GAATTCTCACATCCGAAGGAAGCTAATAAAGATGGGAATTGATCCAAATAACCACAAGCTACATCAAAGCCTTCATCGAT CTCATGTCCACCCACTTTCTGTTGCGGATGCATCATCATCAGAGTCCATGAACAAAGAGCAAAAAATCCCTTGCTTCAAA TCCTGTGGTACCTCTATTGATCAAATTTCCAGAAATAGTTGTCTTGAAGAAGAAAAAGCAATCATTTCTTCATCTCCTTT GAATCTTGACCTAACCATTGCTTTACCTTCGCCTAACAGGCTTCCTATTGTTGAAGACAAGCTCACGCCAAATTCTAAAT CCAAGACCTTGGACATAGATATAGATCTTAATTGTTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0091600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRKPCCDKENINKGAWSKQEDQKLIDHIRVHGEGSWRSIPKAAGLYRCGKSCRLRWLNYLRPDIKRGIFAQDEEDLIIKL HALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKLHQSLHRSHVHPLSVADASSSESMNKEQKIPCFK SCGTSIDQISRNSCLEEEKAIISSSPLNLDLTIALPSPNRLPIVEDKLTPNSKSKTLDIDIDLNC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641:SF550
2 207 206 6.6E-97 –
PANTHER
PTHR10641
2 207 206 6.6E-97
IPR015495
ProSiteProfiles
PS51294
8 60 53 18.18
IPR017930
Gene3D
G3DSA:1.10.10.60
10 66 57 1.6E-18 –
SUPERFAMILY
SSF46689
10 107 98 1.09E-28
IPR009057
SMART
SM00717
12 62 51 3.1E-14
IPR001005
Pfam
PF00249
13 60 48 3.2E-15
IPR001005
CDD
cd00167
15 60 46 4.19718E-11
IPR001005
ProSiteProfiles
PS51294
61 115 55 25.059
IPR017930
SMART
SM00717
65 113 49 4.0E-14
IPR001005
Pfam
PF00249
69 110 42 7.4E-13
IPR001005
Gene3D
G3DSA:1.10.10.60
69 137 69 6.2E-19 –
CDD
cd00167
71 111 41 2.26348E-10
IPR001005

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0091600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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