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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0094500 |
| Transcript ID | LotjaGi1g1v0094500.1 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT1G66250.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9C7U5|E132_ARATH Glucan endo-1,3-beta-glucosidase 2; TrEMBL-Plants: tr|G7K1P2|G7K1P2_MEDTR Glucan endo-1,3-beta-glucosidase-like protein; Found in the gene: LotjaGi1g1v0094500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:14250414..14253872) extracted from Lotus japonicus Gifu genome v1.2.
ATTCTCCTACAGCTTTACCCCACTTTCCCCCTTTCCATTATTCTTTCACTTGTGTTTCATTTTCCACACACTCCTTGTCT CTCACCCTTTCTCTCTCTCATTCATTGATTCATTATTTGAGTTTCTCTAGATTTCTCAGATAGATTTTGAATCTATGGCT TTGCATTTTCTTCTTCTGCTGCTTTTTGCAGTTTCTGTTGTTGCAGCTGATGAGGGTGAGTGTGGTGTGAACAGTATTTC TTTGCTATTTGCTGTTTGTGCTTTCTCTGCTGCCAAGTTTTCTCTAGAGATTATGTGTTTTCCACTTTTTAAAGTTATGC TTCCATTCTGAATCTCTCATTGCCATTTGTTTTCTCAACATGGGTTAGCATTATTCAGAAATTACATTTGAAAAAGTTAC ATTTTTTTGAACTGTTTGGTTCTTCTCAAGCCATTACTTACTTGTTCTGTTCTCTCCCTCAAGCAGAGGAGTTTTGTTGA TTCCTTGTTGTTTTTTTGCTTTGTTGTGTGAAAACCCTTATAGACCCTTACATTGCTTCCATTTTCACACCTTTCCTAGC ATTATTAGCACAACATTGATGTGTGTTAGAGTGTTGTTATCTGAGATTTAGTTAGTGTTATGTTCAGACCCAAGGTTTGT TGGGCATGTTATGACTGAGTTAATGAGTCATTGTGATATAGTGTTATCTGAGATTTAGTTATTGTTTGACCATTTTCTTT TTGGTTCACAAGACATTTCTAGGAGCATGCATTTTTCTTAACATGTTCACTCTTTCTGGGATTATAGTTTTGGCCAATAA GTAATACATGTACAATAAATTAAAATAGTAGCTAGGTTTTTATTGGCTGTTCTTCTTGAATGTGGTCCACCTATAGGATT CAGAAATATTATATTCATATGGAGCAAGAATGCTTTTTTATCCTTCTTATCAGTCAAATATTGTCGTTCTTTATAGTTCC AAACATGTGGATTTGTCATGTGTACTAGTGTGTATCAATTTGTAGGAAGATTGAAGAAGTTAGTTTTGAAAAAAAAAGCT TTTTTATTTTATTTTGAGGGAACTGTCTGTTGTTTAAGAATTTTGCTGGCAATCTTCAAAAGAAAGGAGGTAGACTAGTC ATATTAAATTTGGATTGGTTTGAACAAACATAATGTGCAAAAGAGTATGCCTGCAATGCTTCCCAATCCAACATTGTGTT ATTGGATTGGTTTATCAAGTGAGGACTTGAATCTTATTCTAACATTTGAACCTTGCAGAACCATTTATTGGAGTGAACAT TGGAACAGATCTCTCAGATATGCCACACCCTACCCAAGTAGTGGCTCTACTTAAAGCTCAGAAGATTCGAAATGTTCGGT TGTATGATGCTGACCAAGCTATGCTCATTGCACTGGCAAAGACAGGCATTCAAGTTGTTGTAACTGTTCCTAATGAAGAG CTCTTAGGAATTGGTCAATCGAATTCCACAGCTGCCAACTGGGTTTTCCGCAATGTGGTAGCACATTACCCTGCCACCAA TATCACCGCCATTTGTGTCGGTTCTGAGGTTCTAACCACCCTGCCTAATGCAGCAAAAGTGCTTGTCAATGCGATCAAGT ACATTCATTCAGCCCTTGTCGCGTCGAATCTCGATCGCCAAGTTAAAGTCTCAACGCCTCTTTCCTCTTCAATCATCCTT GATTCATTTCCACCTTCACAGGCTTTTTTTAACCGCTCAATGAATTCAGTTTTGGTCCCGATTCTCGATTTCCTCCAATC CTCTGGCTCTTATCTCATGCTCAACATTTACCCTTACTATGATTACATGCAATCAAATGGTGTGATTCCATTAGATTATG CACTCTTCAAGCCTCTCCCTCCGAACAAAGAAGCCGTTGATTCTAACACCCTTCTCCATTACTCAAATGTCTTTGATGCC ATGGTTGATGCAGCATACTTTGCCATGGCTTTTCTAAATTACACTAACATCCCTGTGGTGGTGACGGAGTCCGGCTGGCC CTCAAAAGGCGACTCCGACGAGCCTGATGCAACTGTGGACAATGCTAATACTTACAACAGCAATTTGATCCAGCATGTGA TTAACAAAACTGGAACCCCCAAACACCCTGGAATTGCTGTTAGTACTTACATCTATGAGCTCTACAATGAGGACATGAAA ACCGGGCCGCTGTCGGAGAAGAATTGGGGGCTGTTTGATGCTAATGGGGTACCTATTTACATTCTACACTTGACAGGTTC AGGAGCTGTCCTAGCTAATGATACCAGCAATCAAACTTTCTGCATTGTGAAGGATGGTGCCGACCCGAAGATGGTGCAGG CTGCACTGGATTGGGCATGTGGCCCTGGCAAGGTGGAATGTTCTTCATTGCTGCAGGGTCAACCATGCTATGAACCAGAC AATGTGATTTCACATGCAAGTTATGCTTTTGACAGTTACTATCATAAGATGGGAAACACTCCTGATTCATGTGACTTCAA GGGAGTGGCAACAATCACCACCTCTGATCCAAGTAATTACTATTCCCCAATATTGGGTTGGATTTGGGTTCCTGCAGTTC AGGGCAATCCTAAATTCACACAATCAAGGAATCCGAGACATTTGATCAAAAGTTGGACGACTCATTTTTCATTGAGAACA GACAGCAGAGATGAGCTCAAAATTTGAGATGGTCCAGATTTTGACCTAGGGCTCAGATTCCTTGACTGCATGAATTTATT ATTTCCCTTACAACTCAGATTCCTTGACCGTGTGAATTTATGATTTCCTTGACTGCTGCGGTGAATCCCTATTCGGCTGG GTTGGATTAGCTTTTAGCATTTTATTTAGTTCCATTGATAACTTCTAGGATGACTAACACCTTTTGCATGATTAATTGCA GGTCATGGTTCTTGTAAATTTCCAGGAAGGTATGATATTTTGCTTCTTTGATTCATTTTTACTATCCAATGTTTGCTAAC ATCATATATACTTATAAGTGGTTTCTGGATATGTGCAGTCTTGGCAAAAATGGCACCTTTGGTAACTTCACTGCTCCATC AATGAACTCAAGTTCAGATTCTTCAGCCTACAACCTCCAGAGCTGTGAAATGAGAGCTAGAAACCTTCTAATGGTGACAG GATTTCTTCTGATGGGACTAGTTTTGATGTAAAGGGGTACATGTCAGAATATTTGATCATTCAAATTTTTTGTGGTGGAT GATAATGCCTTCTCGGGTGGCATTGTGTTGTACGTCCATTCAATTTTGTACAAAATCCAGTTAAGGATTTGGACTGAATG AGGCTGTAACAGAATCATCATTATTATTCTTTTCAAGTGGAATTGATTCAATCTTTTATCAACCATTGATATTTCGTAGT TTCAAACGTGTTCCTTATAATCTCCTTATGTTGATATAAAGTTATATGGCACACACTATAAATAACTATGCACATTGTAC CCGTTCATTTTGTGACACA
CDS sequence (LotjaGi1g1v0094500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTGCATTTTCTTCTTCTGCTGCTTTTTGCAGTTTCTGTTGTTGCAGCTGATGAGGAACCATTTATTGGAGTGAA CATTGGAACAGATCTCTCAGATATGCCACACCCTACCCAAGTAGTGGCTCTACTTAAAGCTCAGAAGATTCGAAATGTTC GGTTGTATGATGCTGACCAAGCTATGCTCATTGCACTGGCAAAGACAGGCATTCAAGTTGTTGTAACTGTTCCTAATGAA GAGCTCTTAGGAATTGGTCAATCGAATTCCACAGCTGCCAACTGGGTTTTCCGCAATGTGGTAGCACATTACCCTGCCAC CAATATCACCGCCATTTGTGTCGGTTCTGAGGTTCTAACCACCCTGCCTAATGCAGCAAAAGTGCTTGTCAATGCGATCA AGTACATTCATTCAGCCCTTGTCGCGTCGAATCTCGATCGCCAAGTTAAAGTCTCAACGCCTCTTTCCTCTTCAATCATC CTTGATTCATTTCCACCTTCACAGGCTTTTTTTAACCGCTCAATGAATTCAGTTTTGGTCCCGATTCTCGATTTCCTCCA ATCCTCTGGCTCTTATCTCATGCTCAACATTTACCCTTACTATGATTACATGCAATCAAATGGTGTGATTCCATTAGATT ATGCACTCTTCAAGCCTCTCCCTCCGAACAAAGAAGCCGTTGATTCTAACACCCTTCTCCATTACTCAAATGTCTTTGAT GCCATGGTTGATGCAGCATACTTTGCCATGGCTTTTCTAAATTACACTAACATCCCTGTGGTGGTGACGGAGTCCGGCTG GCCCTCAAAAGGCGACTCCGACGAGCCTGATGCAACTGTGGACAATGCTAATACTTACAACAGCAATTTGATCCAGCATG TGATTAACAAAACTGGAACCCCCAAACACCCTGGAATTGCTGTTAGTACTTACATCTATGAGCTCTACAATGAGGACATG AAAACCGGGCCGCTGTCGGAGAAGAATTGGGGGCTGTTTGATGCTAATGGGGTACCTATTTACATTCTACACTTGACAGG TTCAGGAGCTGTCCTAGCTAATGATACCAGCAATCAAACTTTCTGCATTGTGAAGGATGGTGCCGACCCGAAGATGGTGC AGGCTGCACTGGATTGGGCATGTGGCCCTGGCAAGGTGGAATGTTCTTCATTGCTGCAGGGTCAACCATGCTATGAACCA GACAATGTGATTTCACATGCAAGTTATGCTTTTGACAGTTACTATCATAAGATGGGAAACACTCCTGATTCATGTGACTT CAAGGGAGTGGCAACAATCACCACCTCTGATCCAAGTCATGGTTCTTGTAAATTTCCAGGAAGTCTTGGCAAAAATGGCA CCTTTGGTAACTTCACTGCTCCATCAATGAACTCAAGTTCAGATTCTTCAGCCTACAACCTCCAGAGCTGTGAAATGAGA GCTAGAAACCTTCTAATGGTGACAGGATTTCTTCTGATGGGACTAGTTTTGATGTAA
Protein sequence (LotjaGi1g1v0094500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALHFLLLLLFAVSVVAADEEPFIGVNIGTDLSDMPHPTQVVALLKAQKIRNVRLYDADQAMLIALAKTGIQVVVTVPNE ELLGIGQSNSTAANWVFRNVVAHYPATNITAICVGSEVLTTLPNAAKVLVNAIKYIHSALVASNLDRQVKVSTPLSSSII LDSFPPSQAFFNRSMNSVLVPILDFLQSSGSYLMLNIYPYYDYMQSNGVIPLDYALFKPLPPNKEAVDSNTLLHYSNVFD AMVDAAYFAMAFLNYTNIPVVVTESGWPSKGDSDEPDATVDNANTYNSNLIQHVINKTGTPKHPGIAVSTYIYELYNEDM KTGPLSEKNWGLFDANGVPIYILHLTGSGAVLANDTSNQTFCIVKDGADPKMVQAALDWACGPGKVECSSLLQGQPCYEP DNVISHASYAFDSYYHKMGNTPDSCDFKGVATITTSDPSHGSCKFPGSLGKNGTFGNFTAPSMNSSSDSSAYNLQSCEMR ARNLLMVTGFLLMGLVLM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 17 | 17 | - | – | |
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| PANTHER | 6 | 458 | 453 | 2.8E-269 | – | |
| PANTHER | 6 | 458 | 453 | 2.8E-269 | – | |
| Phobius | 14 | 18 | 5 | - | – | |
| Phobius | 19 | 478 | 460 | - | – | |
| Pfam | 24 | 343 | 320 | 1.6E-80 | ||
| SUPERFAMILY | 24 | 343 | 320 | 4.5E-86 | ||
| Gene3D | 24 | 345 | 322 | 1.3E-117 | – | |
| ProSitePatterns | 258 | 271 | 14 | - | ||
| SMART | 360 | 445 | 86 | 3.8E-48 | ||
| Pfam | 361 | 432 | 72 | 1.0E-18 | ||
| Phobius | 479 | 497 | 19 | - | – | |
| Coils | 496 | 498 | 3 | - | – | |
| Phobius | 498 | 498 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0094500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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