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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0094700 |
| Transcript ID | LotjaGi1g1v0094700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT1G66230.1 myb domain protein 20; Swiss-Prot: sp|Q50EX6|ODO1_PETHY Protein ODORANT1; TrEMBL-Plants: tr|I3T4S0|I3T4S0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0094700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:14322303..14325859) extracted from Lotus japonicus Gifu genome v1.2.
TATTCATCAATGAAATAAAATAAGAGATAAATTGAGATAGTGGGTTTGTGGGGCTATGGGGACTATAGAGGTTAGATTAA TAGTGGGGGTGATGATCTCTATATATAAATAAGTAGGTGATGGCATTGGTGCTCTATCCTAAGATGTAATGTGCATATAA TTCTCAAAGATTCTCAACTCCCTTAGACTCTCTCTTTCTATCATTTTTCTTAAGTCTCTTTTCTCTTTCAATAATATAAG CTTATTTGAACCTTCAAGAGTTGATCATTTATAACTAGGCTTTATTGTGACATTTTTGTTTTGGTGAGAAAAAATGGGAA GGCAACCTTGCTGTGACAAAGTTGGGTTGAAGAAGGGGCCATGGAGTGCAGAGGAGGACAAGAAGCTCATCAACTTCATT CTCACTAATGGTCAATGTTGCTGGAGAGCTGTCCCTAAACTAGCAGGTTTCCTTTCACAGCTCTTAATACATGTTTGGAA GGATAGAAGCTTCTCTAACTAGCTTTGAGTTTCAGAATTGATTCTGAAAATTCAGAAGCTAATCCAAACATGCTATTATT GTTAGAGCATTTCTTCAACAATGATGAGCACATAGAGATTTAACCCTTAAAAATGCTGGAGTTTCATGCTTTATTAGCAA TTTGGCTATATCTTTAAAAGATTAAAAAAAGTGTTTTTCATTATGATCAATGGGGTTTTGGTCTTTTTAACTACCTTGGT TTCCTGCTTGGTTCCTCTGTCTTGTTTATTTGTTTTCCATTCTGTCCAAGACAAGGAAACCAAGAACTGAAAACTGGCTA CAAAACATGTTTCAGCATTCCCTTTTAAAGCAAGTCTTCAAAACATGTTTCAGCATTTTGAAGTTTGATTATATGGAATC AACAAATGTGATAGCTTTCTTGTTTATTTGGGTAAAAGGGTGTGTTAAATTAATGCATTGGCTTCATAATTTTGAATTCA AATGCTTACAAGAAAAAACCACTTCAAGTTTAACAATTTGGTTGACTCTATGCAGGGCTGTTAAGGTGTGGGAAGAGTTG CAGGCTCAGGTGGACAAATTACCTGAGGCCAGACTTAAAGAGAGGCCTTTTATCAGAATCTGAAGAGAAAATGGTGATTG ATCTCCATGCTCAACTTGGCAACAGGTTCTTCTTCCACCAACCATTTTCCCCTGTTCACTCTGTTCTGCATGTTAATTCT TCCTTGATGAACCTTACTAATGATTAAATCAAATAATTGACAAAGTGCTTTTATAAAATTTTTTACTAGGATGGAAAAGA TTTGAATCAAAACTAAGGATATCTTAATGTCACCAAAGGCACTACCTTAGTTGAATTTGTTATATTTTTCTAACCATGCC CCTCAACTTGTAATTTGTTTATTTGTTGGAGAGAAAAGACGTGGTCCCATGTCTCACAAGTCACACCTGCTAGGAGAGGG AGGCGTGTGAAAATTGGACTAATTTCATTTTCATGTTTTTTCAGTTTTTTATTTCCTTCATTTTTTCACTAAAAAAAGTT GAAAAGGAACTTTTTTTGACTGCAGTTAAAGTTGACTGGAAAATAATATCATAAATATAAAAAAGTAACTAATATAGAAA GTAAATAGAGGCCAAATTTGTCTTGTAGGCTATTTTTCTTATTTCTTTGCTTGCATGACATTGGAAGATGGAGCTTTATA GTGACTATAAAGTCATTCTTCCTTTTAAGTGATGCCAGTATTCCGTATGTACCTCATCTTCATGTTTGTAAATTCTTATA AAATTGATCATGAAGTTAAATCTAAAGGTGTGTTTGGATCTTGCATAATTGATTTTGATAGAGTTGGTTCTGACATAGTT GTGTTTTATAAATGTGAGTTAACATGATTTATATTTGGATACCTTTTAAAAAAAGTTAGTTTTGTATGGTAATATTATGA AATTCTGTTTTTTTTTTTCGATAAAGCAGAATTGCATTGATAGGAAAATCCTTGAGACCAACCCTCTCAAGTAGGCAAAA TACAAGTGACAATTAGTAGCTTCTGAACAGCCCTATCAAAATAAAATACAAGCAGAAAATAAAAACCAGTAACAGCGGAA CAAAGAAAAAAACAGGGGAAGAAGGGGAAAAGCTAGATAGAACCAAAGAAAACACTAAGGGGTATGGCTCTATCAACCCC AGACTTTGCAAAGTGATCAGCTTTTGGTATTTGCTTCTCTGAAAATATGAGTTAAATCCACAGCATCAACTTCAGTCATT ATTAAATTCTGTTGTAAAATCTTTATACTACGGGTGCACTCAAATATCATTTCAACTTGTTAGAATTGATTTTAACCGAG TAAAATTGATTCTATAGAATTGATTGTGGCTTCCAAAAATGCTCTTATGTAGTTTATGAATATCAGATATATTTTGAGGA AAGAAAAGTTGATCCCATACTAATTATGATTAACTCTTTCTTCAGTCACTATTATATTACTGATTACTAATGTTTTTTTT CTTTTTCTTCTGTCCTTATTTTCATTCTACAGATGGTCTAAGATTGCAACTCATCTTCCTGGAAGAACAGATAATGAGAT TAAAAACCATTGGAACACCCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTGTCACACACAAACCACTCCCCA ATGTAACAGAGCAAACACAGATTCAACCCAAAGAACAACAACAACTAGTAGAAGAACAACCTTTGCTGGTTGACTTTGAC CTGAAATTTGAACATGAAATTGACCAAAACAAGGAGCCAGAAAAGCCAGAGACTTCAATTGAGTCATCCATCATCACTGA AACCAAAGAGGAAGAAAAAATCATAACACCCTTATTTGACACAATGGAGGTAATGGATGGGTTTTGTACAGAGGATGTTC CAATAATTGAACCTGATGAGATTCTAGTGCCATGTGCTTCTTCCTCTTCATCAACCTCTACATCATCTTCTTCCAATTCA AACAATTTCCTTGAAGATTTGCAGCTCCCAGATTTTGAGTGGTCTTGTGATTACACTGAAAATTGTATTATTAGCAATTA CAATGAAGACGCCAATAATAACAACATGGACTTTTGGGTTGATGACTTTATTAGCAGTTTGGATTTGCTGATTAATGATG ATGAAGGTGATGGAAATGGAAAGCAAGCATTTGATGCTCCACTCAGCAAGAACAACTCAAGAATGGTCATGGATTCAGAA CCTTGGGCATATGGGCTGTTTTGATTTGAATTTTTTTTCTCCCCTTTCCTTCTGTCTTAATTACTTGTGATTTGCTTCTA AGTTGTCATCATGAAGAATAAGCAGTGAATCATCAATTAAGAAGAACACAACTCTTGTTTAATGTTTAGCATTATCAAAT TCGTTTTTTTTTTCTAAACTTTTCACCTTATATTGTAAAAGGTTATATACATGAAAATGGAAATGTTTTCAACTATGATA TCCGTTTCACAAATGAGCTTAGCATATAAATTAGGCTTAAATATGTTGGATGTCCCTCTAAAATAGGGGTCCTTTGGTTA AGGCCCCTACAAATTTTTTTGGGTGGAATAAGCCCCT
CDS sequence (LotjaGi1g1v0094700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGGCAACCTTGCTGTGACAAAGTTGGGTTGAAGAAGGGGCCATGGAGTGCAGAGGAGGACAAGAAGCTCATCAA CTTCATTCTCACTAATGGTCAATGTTGCTGGAGAGCTGTCCCTAAACTAGCAGGGCTGTTAAGGTGTGGGAAGAGTTGCA GGCTCAGGTGGACAAATTACCTGAGGCCAGACTTAAAGAGAGGCCTTTTATCAGAATCTGAAGAGAAAATGGTGATTGAT CTCCATGCTCAACTTGGCAACAGATGGTCTAAGATTGCAACTCATCTTCCTGGAAGAACAGATAATGAGATTAAAAACCA TTGGAACACCCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTGTCACACACAAACCACTCCCCAATGTAACAG AGCAAACACAGATTCAACCCAAAGAACAACAACAACTAGTAGAAGAACAACCTTTGCTGGTTGACTTTGACCTGAAATTT GAACATGAAATTGACCAAAACAAGGAGCCAGAAAAGCCAGAGACTTCAATTGAGTCATCCATCATCACTGAAACCAAAGA GGAAGAAAAAATCATAACACCCTTATTTGACACAATGGAGGTAATGGATGGGTTTTGTACAGAGGATGTTCCAATAATTG AACCTGATGAGATTCTAGTGCCATGTGCTTCTTCCTCTTCATCAACCTCTACATCATCTTCTTCCAATTCAAACAATTTC CTTGAAGATTTGCAGCTCCCAGATTTTGAGTGGTCTTGTGATTACACTGAAAATTGTATTATTAGCAATTACAATGAAGA CGCCAATAATAACAACATGGACTTTTGGGTTGATGACTTTATTAGCAGTTTGGATTTGCTGATTAATGATGATGAAGGTG ATGGAAATGGAAAGCAAGCATTTGATGCTCCACTCAGCAAGAACAACTCAAGAATGGTCATGGATTCAGAACCTTGGGCA TATGGGCTGTTTTGA
Protein sequence (LotjaGi1g1v0094700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRQPCCDKVGLKKGPWSAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSESEEKMVID LHAQLGNRWSKIATHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLPNVTEQTQIQPKEQQQLVEEQPLLVDFDLKF EHEIDQNKEPEKPETSIESSIITETKEEEKIITPLFDTMEVMDGFCTEDVPIIEPDEILVPCASSSSSTSTSSSSNSNNF LEDLQLPDFEWSCDYTENCIISNYNEDANNNNMDFWVDDFISSLDLLINDDEGDGNGKQAFDAPLSKNNSRMVMDSEPWA YGLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 259 | 257 | 2.5E-108 | – | |
| PANTHER | 3 | 259 | 257 | 2.5E-108 | ||
| ProSiteProfiles | 9 | 61 | 53 | 13.194 | ||
| Gene3D | 11 | 67 | 57 | 8.1E-17 | – | |
| SUPERFAMILY | 11 | 108 | 98 | 1.95E-26 | ||
| SMART | 13 | 63 | 51 | 3.8E-12 | ||
| Pfam | 14 | 61 | 48 | 2.1E-12 | ||
| CDD | 16 | 61 | 46 | 9.96102E-9 | ||
| ProSiteProfiles | 62 | 116 | 55 | 26.677 | ||
| SMART | 66 | 114 | 49 | 2.4E-15 | ||
| Gene3D | 70 | 147 | 78 | 9.6E-21 | – | |
| Pfam | 71 | 111 | 41 | 1.1E-13 | ||
| CDD | 71 | 112 | 42 | 1.05782E-11 | ||
| MobiDBLite | 164 | 184 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0094700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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