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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0094800 |
| Transcript ID | LotjaGi1g1v0094800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor, putative; TAIR: AT5G37680.1 ADP-ribosylation factor-like A1A; Swiss-Prot: sp|Q8W4C8|ARL8C_ARATH ADP-ribosylation factor-like protein 8c; TrEMBL-Plants: tr|I3T1K5|I3T1K5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0094800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:14355863..14359395) extracted from Lotus japonicus Gifu genome v1.2.
GTTGTGTTGGAAAGTGAAACAAGCAAATATGTAACGAGGTTGAGTTGAAACATCGGTAGGTACTAGGTACTAGGTACTAG GTACTAGAACAAAACATACACATCTTATTGTTGTGTGTCGTATCGGCATTGTAGATTCCAACCCTTTGTTCCTTCCTTCC TTAACTTTTTGTTCGGCCAAGTTTCTCTGTTTCCTCATTCACCCTCATATCTCCACTTTCACTTTCAATTTCTCTTTGCT GCTTTTCCCCTATTCTCAATGGGTCTCTGGGATTCCATGCTCAACTGGCTCCGCAGGTAATTTTTTAGCACCCCACATAA TTTATTTTACTTTTTTGTGATAAAGTTTGTTTTTTTCCTTGTGAAATTTCATCCCAGTTGCTATGTCATGCTTACAGTTT CATATACTATTGATTGAGATTGAGAAAGCCTTAAAGTTGATACCCTTGAGTGTTAAACCCTTTCAATGGTGATGAATTTT GTGTCTTGTGTTGTGTCAGCTTGTTTTTCAAACAGGAGATGGAACTTTCCCTTGTGGGGCTTCAGAATGCTGGCAAGACA TCTCTTGTCAATTCAATTGCTGTGAGTTTATGAATTTATATTGCAATGCAAAACCCTGAAAATTAGTATTGTTATTCTAC TGGTTGGATATTGATTTTTTGGTTTTGTTTACCAGACTGGGGGTTACAGTGAGGACATGATTCCAACTGTGAGTATCTTT TTGTTTTCTTCATCGAATGTTGAATTGCATATTTGAAGATTGTAGCTTTGGAAGTGTGTATTTGTAATTTGAAGCCTAAA CCTTGCTGTTAAACTCAGGTTGGGTTCAACATGCGGAAAGTGACTAAGGGAAATGTCACCATAAAGCTTTGGGACCTTGG TGGACAGAGGAGGTTCCGGACAATGTGGGAGCGCTACTGTCGCGGCGTCTCTGCTATTGTGTATTGTCTCTTTTCATGTT CTTTCTTGCAAGCATTTTTTCATATGTTATGTACAGGCATATGTTCATACATTTACACATGCATATCTTTCTTTCTTGTT CCTTTTCGTAAGAGCCTGTTTGGTACTTTGGTTGGATAAACTTCTCAATAGGAGAATAAGTTTAATTGCTCTTGCAATAA TGATGGTTCTTCTAAAATATAGCTTGGGTAAGTTAAAATTAACGTATCCACCTTAATCTTTTAAGAAGCTATCTCATTCT ACTTCTCTATGAGCTCCAATAAAGTCATAAGGGTGTTTTTGTAAGATAGTAACTAAATACCTATCTCAATTGTAAAGCTC CCATAACTAACGGGTGGTTGGTTCAAGTGGTCTATGTTTGATTTCTCTAAGGCTTTGTTTGTGAGTTTTTAAGAGAGGGG ATGGGAAGACTTTGAGGGGAAGGGAAGGGGAGGGCAAGGGAGGGGGAAGGGGGGTAAGCCATTCCCTTGTTTGCAAGCCC ATAACCCCCCAATTTGAGGGAACAAAAAAATATAACTACAAGAGGGTTTTGAAGGGTTTTTAGAAATACCCCAAACCCTT CCCCCTTCCTAAAGTCTCACAAGCAAGGGGGCAGCTTCTCATAAGCCTCTCCCTTCCCTTCCCTCCCCTCTAATACTCAA CTCAAAAATACACCTTTAAGTAAAGTCTGTGGTTTGAGTCTTGACTGTGAGAAAAACCCTCATTGAGAGAGCTAGTCCCA CGAGAGTGTGGATGTCCAGGACTCAAATAGAATTGCATCCTGCCTGTGTTAGATATCAAAATAAATAAATTGAGAAGCTC CTATAGTGTAGACCAGTTGTAAGTTTTGGTTTTAGATAACTGCATGTTGTTGGTTGTGTTTTCTTTCCTGTTTATGTCGA AACCTTAGGAAGAAAACTTGATACTTGGTTTTATCAATATTTTTTCTGATGATCAAAAGGGAGTTTCGGCATCCATACTT CATCTTGTGTTGTGTATTTTAGCCCCTTTAAGTAATTCGGGGTGGTGTTTCATCATGCTATATGCCTTCTACAATTTTGC TTCTTTTTCACTGATGGATGGAAAGACAGGTATGTTGTAGATGCTGCGGATAGAGACAGCGTTCCGATATCTCGAAGTGA GTTACATGAACTCTTCACAAAACCCTCTTTGAGTGGGATTCCTTTGCTTGTTCTTGGCAACAAAATTGACAAGTCAGAAG CTCTTTCCAAGCAAGCGTTGGTCGATCAGCTGTGAGTTCATATAATAGAGGAAGTTGTTCCATAAATCGTTATATATATA TATATATATATATTATTTATTGAAACTTGTCTTGATTCCTTGTGTAACTCATTAATTCTTTGTTTTTATTCAGAGGACTA GAGTCGATTAAAGACAGAGAGGTCTGCTGCTATATGATTTCATGCAAGGATTCTGTAAACATAGATGCGGTCATTGACTG GCTTATCAAACACTCAACAACTGCAAAATGATCCTCGGGTTTGCTAGTATTTGATTTTTGGCCATAGATGCAAGGTGTTG ATGGAATCCTTCCAGGTAGGTGAGTAGGTATCAAACACACCTTTTAGTTGTGGTTCAAGTAGGTGAGTTTGTACTTTGTA CAGTAATCAAACTTTGGTTAAATCTTCCATGCGATGTTATTATGTTTGGTTAAACTGGTTAGTTGATATTGTACAAGTTT TTTACAGCTTCTGTTTATTTGATTAAAAATATTTAACATTATTATGATCATTATATGATGAAAAATGTTATTTTTTTATG ATTGCTTCTCAACTTGAAAAAAATCGTCATTTAAAAGTGTACTATCACTGGAAACAAATCACTTCCTGAATTTGAAATCT TGAATGATAGTTGTTTTAATATTCCAATCCCATATAGTGTTGCACTATGCTAGGCTTTGAAGGTAGCAATACGTGTGGTT TTCTAGTGATGTGTGTGTGTGTCTCTGTTGTTTTTCTTTCTAGCAATACGCCCTCTTTTACGGTGTCCTCTTTTACTTAC TCTTTACATACCTATGCCCTTTGTCTGTGAAGAAATAGAACCTCGCATAAATGTAAAGTGTGATTGTGATCAACTAGTTC TTGTCATCATATAAAATGTTTTCAGCCTATAATTTTCTGAACTAGATAGTTTATCATTGTTCAAGCTCGAATTCAATTTT GTAATGGTCCCCTTACCTTTTGATGAAGTGCATGTTTGAAAACTTTTGTACAATTGATTCTGAAGCTATAATCAATTCTG GGAAAAGCTTATGCGAGTTGTTCGGTTTGAGAACTGACTGGTAGCTACTTCTAACCTTATGTTCTCTTTGAGAAAGAGAC TCAACGCGCCTAAAAGCTTGAAGCTCATCCTGTAAATATTGCATTCCCATTTAGAGATTGAGTATAGAACCTTCTGATGG TGATGCTATTTAGGGTGTTCATGGATGGGTTATGATGGATTTCTTTTTATCATTCACAGGACACTAATGTTTTAGAGTCA ATTCCTTAGCGTGTTTAAATATTATTTTCTGTATTAGTGCATTGGAATATTAAATTTAAATTTCAAAGTGAAAAAAAAAA GTTGAAATGAGGG
CDS sequence (LotjaGi1g1v0094800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCTCTGGGATTCCATGCTCAACTGGCTCCGCAGCTTGTTTTTCAAACAGGAGATGGAACTTTCCCTTGTGGGGCT TCAGAATGCTGGCAAGACATCTCTTGTCAATTCAATTGCTACTGGGGGTTACAGTGAGGACATGATTCCAACTGTTGGGT TCAACATGCGGAAAGTGACTAAGGGAAATGTCACCATAAAGCTTTGGGACCTTGGTGGACAGAGGAGGTTCCGGACAATG TGGGAGCGCTACTGTCGCGGCGTCTCTGCTATTGTGTATGTTGTAGATGCTGCGGATAGAGACAGCGTTCCGATATCTCG AAGTGAGTTACATGAACTCTTCACAAAACCCTCTTTGAGTGGGATTCCTTTGCTTGTTCTTGGCAACAAAATTGACAAGT CAGAAGCTCTTTCCAAGCAAGCGTTGGTCGATCAGCTAGGACTAGAGTCGATTAAAGACAGAGAGGTCTGCTGCTATATG ATTTCATGCAAGGATTCTGTAAACATAGATGCGGTCATTGACTGGCTTATCAAACACTCAACAACTGCAAAATGA
Protein sequence (LotjaGi1g1v0094800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLWDSMLNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTM WERYCRGVSAIVYVVDAADRDSVPISRSELHELFTKPSLSGIPLLVLGNKIDKSEALSKQALVDQLGLESIKDREVCCYM ISCKDSVNIDAVIDWLIKHSTTAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 184 | 184 | 4.0E-28 | – | |
| Gene3D | 1 | 181 | 181 | 5.9E-55 | – | |
| PANTHER | 1 | 184 | 184 | 6.9E-122 | – | |
| PANTHER | 1 | 184 | 184 | 6.9E-122 | – | |
| SMART | 8 | 180 | 173 | 8.2E-15 | – | |
| Pfam | 9 | 178 | 170 | 5.4E-45 | ||
| ProSiteProfiles | 13 | 180 | 168 | 18.269 | – | |
| SUPERFAMILY | 17 | 179 | 163 | 1.09E-45 | ||
| TIGRFAM | 18 | 174 | 157 | 1.6E-19 | ||
| SMART | 20 | 183 | 164 | 3.3E-8 | – | |
| CDD | 21 | 179 | 159 | 1.02792E-102 | – | |
| PRINTS | 21 | 44 | 24 | 7.4E-15 | ||
| PRINTS | 77 | 102 | 26 | 7.4E-15 | ||
| PRINTS | 122 | 143 | 22 | 7.4E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi1g1v0094800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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