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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0098400 |
| Transcript ID | LotjaGi1g1v0098400.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane 9 superfamily member; TAIR: AT1G14670.1 Endomembrane protein 70 protein family; Swiss-Prot: sp|Q940S0|TMN2_ARATH Transmembrane 9 superfamily member 2; TrEMBL-Plants: tr|V7B7Y7|V7B7Y7_PHAVU Transmembrane 9 superfamily member; Found in the gene: LotjaGi1g1v0098400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:14982800..14986838) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAAAAGTCAATGACATGTTTGGGTGGTGCCATTGTGATCCTATGTTGCTGCATAAGACATGTCACATCTGATGCATT AGATCATCGTTACAAAGAAGGAGATTCAGTCCCTTTTTATGCCAACAAGGTGGGACCCTTTCACAATCCCAGGTCAGATT TTCAATCTCTCTCACTCTCACTATCATTTCTGCTTCAAAACATTTCAATCCCAATGTTCCTGAAATGATATTAGAGGGGG GAAAAACATTTTTTTTGGGTTGTGTTGTGATGGGGTTATTACCATTCTAGAATGAGATTTCCTCTGGGATTTGGATGCAT TGGCTCTTTCATCCCAAAGTGTTGTTCTGAGTTTTATGTAATAAACATCCAATAACCGTGTCAATTTATGGTGTGGATTT AGAACATGTGCTAGAATGATGGCGCCAATCAAAACAATGTGTTGAATTCTGGTTTTCTTTGATCACTGAGAACTAGTCAT TTGAATGAACCAATTGAATGAATTCTTCAAGCTGTGACATCAGTTATGACTTATTAATTATTATAGTGAGACCTCCAGTT TCACTGTAAAATCTCAAAATCAGATTTATTAGTTTGCTTTGCTTCAATGTCAAATTGTAGACAGTGTTCAATGTAAGCTT TTAAAGAATTCAAGCCACCAGGATGGCAGAGTTTAGCTCAAATTGTTTTAATATGACTTACCTTGATAATCAAGTAATGC TGTAATGTAACACATCTCTTCCATTTGATCACACACCATTTCATTCTATTTCTTTTACTAAAGTTTGATTTACTATTTTT TATGCGAAAGAATATTGCATTTCTGTTTCGCTGAAAGGCTACTGAATTCTTGAATTTTGCATTAGAAAATAATCTACATC CTTATGTATAAGAATGGATATTAAAATAGTGTAACACTTATTAATTTCTAAAGCATTAAGTTATCATGACTTTCTTCCTT ATAATAGGCTGACTTTGATAATTCTTTGTGCTTTCCCTGATTCCTTTGAATGCCACAGTGAGACATACAGATACTATGAC CTTCCCTTTTGCTCACCAGGTTAGCCAACGAGGATCATTCTTTTTCTTTTTCCCTTCATTTCCTACTATATTGTCTTTGT TTCTCACTACTCCTTATAATTCCAAAGCTTGTTGGATGCAGCTAATGTGGAAGAAAAGAAAGAAGATCTTGGTGAAATTT TGAATGGGGATCGTTTAGTTGTTGCTCCTTTTAAATTGGATTTCCAAATTGATAAAGAACCTGAGAGCTTCTGCAGAAAG AGGCTAACAAGAAAAGAGGTTGCTCAATTCAGATTTGCAGTCTTGAAGGACTATTTTTACCAGATGTACTATGATGACTT GCCAATTTGGGGTTTCCTTGGAAGATTTGACAGTGATGACAAAGATGATCCAACTGTGGCTACTTCAGTATATCTTTTCA AGCATGTCCACTTTGAGATCCTGCACAATAAAGATCGAATCATCGATGTTTTCATTCGAAATGATCCGAATGAAGTTGTG GACTTGACAGAAAATAGAGAAGTGAATGTGGACTTCACATATTCTGCTAAATGGACTCAAACAGATATTCCATTTGAGAA GAGGCTTGAGAAATACTCACAGACGTCCTCATTGTCAGACCACTTGGAAATCCATTGGTTTTCTATCATTAACTCATGTG TGACTGTTATCCTCTTGACTGGATTCCTTGCCATAATTCTCATGCGTGTGCTCAAGAATGATTTTGTCAAGTAAGAGAAT CATTCTCATTCACTGATCTCAGCTGTGTGTATTTTCATTGATTTAGGGTTCTTAGGGTAATCAGCTTATGGAAATAAACG CTTATCACATAAGCATTTTTTCCTAAATATACTCAAAATAGATTATAGGTAGGTGTAAGTGCTTATTCATTTGTTAATCT GAGCAGCTTATGAAAATAAACTCCTTATACGTAGGTCATGAGCTATTTGCATATACTCTGCTAGACATTTGCATAAGTGT TTGTGAGAGTGGATGGAAGCTTATGCTATAAAATAAATTTAAATTAGCTCTTCCAACTGAGGCTTTGAATTTTTTAGCTT GTGGAACTTATTGCCTCAACTATTCCAAATATGACAGATTTGCTCCCGATGAGGAGGCACATGATGAACAGGATGAGAGT GGATGGAAGTATATTCATGGTGATGTGTTCAGGTACCCAAGATACAAGTCTTTGTTTGCAGCAGCACTTGGAACAGGCTC CCAGCTATTTACACTGTAAGTTAGTTAACCTCTCAATTACGTGTTCGGATTCTTTGCACTCAGGAAATCTTGCATTTGGT CAAGTTAGGGGGGTCCACAGTCGTCCGACCAAGATTGTATGGTTCAGATTTAAAGAAATTACTTTAAGTGTGTAGTAACT TCTTTAGTTCTGAGCCGACCAATCTTTATCGGACGACTGTAGACCCTAACTTCACCATCTAGGATTCTTGGACAGCAGGG AATTCGGGTACCTCAAGCACTTATCTTTCAAAGTTTTTTTTTTTTCTTGGCCTTGTATTGTTCAGCTCTTGTAACCATGT ATCTTTGCTCCTGTTTCAGTGCAATATTCATCTTTATGCTAGCTCTAGTTGGTGTTTTCTATCCATACAACAGGGGAGCT CTGTTTACTGCACTTGTTGTCATATATGCACTAACATCTGGCATTGCTGGCTACTCTGCATCTTCTTTCTATTACATGAT TGAAGGGAAAAACTGGGTACATCACCACACCTTTGACAGCATATATCATTGCGGCTCCACATACTTGTTTTGACTACTTA ACTCAGTGTTCACATTCTTGCTAAATTTCTTCATGATAGCAGCATATTGTCTAGTTTACTGGTTTTGAAATCCCATAACT CTCCACATGGATCAAACAGATTCTTGATGATAATCCTAAACCATGTTCTTTTTTTTTACTTTCTAGTCAATGTTTTGATT AGGTAAACTGATAATCAAGGAATCTGTTTGATAAAAGCATGTCTGGAACAGCTTCGCGTTCCTCATAATCAATTCTAACA CCCTGAAACTACTCACAAAAACTTCTCCCCTTAATTGATTTTGGCTTCAGAAATTAGAATCAATTGTAAAGAATTTCTAA ACACATACTTAGTTGCCTTTCCCTTACAGTTACCACAGTTGAAATTTGAAAGAACACTGCAGAAAGCACAAGCCTAAATG AAACACACTGATCAAGTTTTGGTTTCTTGCTTGCCAGGTGAAAATTTTGGTGCTAACTGGGAGCCTGTTCTCTGGACCTT TGTTCTTGACATTCTGCTTTCTCAATACTGTTGCACTTGCCTATAACTCCACTGCAGCACTACCATTTGGAACAATTGTC GTTATTTTCCTCATATGGACTCTTGTAACCTCACCTTTACTAGTATTGGGTGGGATTGCTGGTAAGAATAGCCGATCAGA GTTTCAGACTTCCTGTCACACCAACAAGTACCCCAGAGAGATCCCACAACTACCTTGGTACCGTAGAACTCTTGCTCAAA TGGCCATGGCAGGGTTTTTGCCATTCAGTGCCATTTACATTGAACTCTTCTACATATTTGCTAGTGTGTGGGGTCACCAG ATTTACACCATATACAGCATTTTGTTCATTGTTTTCATCATCCTCTTGATTGTCACTGCCTTCATCACTGTAGCATTGAC ATACTTTCAGCTTGCTGCTGAGGATCATGAATGGTGGTGGAGGTATATGTATAATGCAACATCAAGAGTTCATCACTATT TTGTCTTGTAATTCAAGTTCCCCAATTCTTTAACTTATTCATTTTTGGCATAATTTCAGGTCTTTCCTTTGTGGTGGATC AACCGGCTTGTTCATATATGGGTACTGCATATATTACTACCATGCAAGATCAGATATGTCTGGATTCATGCAAACCTCTT TCTTTTTTGGCTACATGGCATGCATTTGCTATGGTTTCTTTCTCATGCTTGGAACAGTCGGTTTCCGGGCTTCTTTTATC TTTGTTCGTCACATATATTGTTCTATCAAGTGTGAATAG
CDS sequence (LotjaGi1g1v0098400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAAGTCAATGACATGTTTGGGTGGTGCCATTGTGATCCTATGTTGCTGCATAAGACATGTCACATCTGATGCATT AGATCATCGTTACAAAGAAGGAGATTCAGTCCCTTTTTATGCCAACAAGGTGGGACCCTTTCACAATCCCAGTGAGACAT ACAGATACTATGACCTTCCCTTTTGCTCACCAGCTAATGTGGAAGAAAAGAAAGAAGATCTTGGTGAAATTTTGAATGGG GATCGTTTAGTTGTTGCTCCTTTTAAATTGGATTTCCAAATTGATAAAGAACCTGAGAGCTTCTGCAGAAAGAGGCTAAC AAGAAAAGAGGTTGCTCAATTCAGATTTGCAGTCTTGAAGGACTATTTTTACCAGATGTACTATGATGACTTGCCAATTT GGGGTTTCCTTGGAAGATTTGACAGTGATGACAAAGATGATCCAACTGTGGCTACTTCAGTATATCTTTTCAAGCATGTC CACTTTGAGATCCTGCACAATAAAGATCGAATCATCGATGTTTTCATTCGAAATGATCCGAATGAAGTTGTGGACTTGAC AGAAAATAGAGAAGTGAATGTGGACTTCACATATTCTGCTAAATGGACTCAAACAGATATTCCATTTGAGAAGAGGCTTG AGAAATACTCACAGACGTCCTCATTGTCAGACCACTTGGAAATCCATTGGTTTTCTATCATTAACTCATGTGTGACTGTT ATCCTCTTGACTGGATTCCTTGCCATAATTCTCATGCGTGTGCTCAAGAATGATTTTGTCAAATTTGCTCCCGATGAGGA GGCACATGATGAACAGGATGAGAGTGGATGGAAGTATATTCATGGTGATGTGTTCAGGTACCCAAGATACAAGTCTTTGT TTGCAGCAGCACTTGGAACAGGCTCCCAGCTATTTACACTTGCAATATTCATCTTTATGCTAGCTCTAGTTGGTGTTTTC TATCCATACAACAGGGGAGCTCTGTTTACTGCACTTGTTGTCATATATGCACTAACATCTGGCATTGCTGGCTACTCTGC ATCTTCTTTCTATTACATGATTGAAGGGAAAAACTGGGTACATCACCACACCTTTGACAGCATGTAA
Protein sequence (LotjaGi1g1v0098400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKSMTCLGGAIVILCCCIRHVTSDALDHRYKEGDSVPFYANKVGPFHNPSETYRYYDLPFCSPANVEEKKEDLGEILNG DRLVVAPFKLDFQIDKEPESFCRKRLTRKEVAQFRFAVLKDYFYQMYYDDLPIWGFLGRFDSDDKDDPTVATSVYLFKHV HFEILHNKDRIIDVFIRNDPNEVVDLTENREVNVDFTYSAKWTQTDIPFEKRLEKYSQTSSLSDHLEIHWFSIINSCVTV ILLTGFLAIILMRVLKNDFVKFAPDEEAHDEQDESGWKYIHGDVFRYPRYKSLFAAALGTGSQLFTLAIFIFMLALVGVF YPYNRGALFTALVVIYALTSGIAGYSASSFYYMIEGKNWVHHHTFDSM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 7 | 19 | 13 | - | – | |
| PANTHER | 8 | 361 | 354 | 3.0E-222 | ||
| PANTHER | 8 | 361 | 354 | 3.0E-222 | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 227 | 203 | - | – | |
| Pfam | 54 | 361 | 308 | 3.4E-83 | ||
| Phobius | 228 | 251 | 24 | - | – | |
| TMHMM | 229 | 251 | 23 | - | – | |
| CDD | 245 | 345 | 101 | 0.00228231 | – | |
| Phobius | 252 | 292 | 41 | - | – | |
| Phobius | 293 | 321 | 29 | - | – | |
| TMHMM | 294 | 316 | 23 | - | – | |
| Phobius | 322 | 326 | 5 | - | – | |
| TMHMM | 326 | 348 | 23 | - | – | |
| Phobius | 327 | 347 | 21 | - | – | |
| Phobius | 348 | 368 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0098400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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