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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0100500 |
| Transcript ID | LotjaGi1g1v0100500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SET domain group 40 protein; TAIR: AT5G17240.1 SET domain group 40; Swiss-Prot: sp|Q6NQJ8|SDG40_ARATH Protein SET DOMAIN GROUP 40; TrEMBL-Plants: tr|G7KFS1|G7KFS1_MEDTR SET domain group 40 protein; Found in the gene: LotjaGi1g1v0100500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:15267362..15271008) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAGATGGAGCAGCAACAAGGAAGCCTTGAAAGCTTCTTATCATGGGCAGCACAGCTTGGAATATCAGACTCCACAAA CACCGACCAACCTCAACACTCTCTCTCTTGTTTGGGCCATTCTTTATGTGTCTCTCTCTTTCCTCACTCTGGCGGGTACT CACCAAAATTTTCCTCTATTTTCATCATAGCTCATCGTATAAACTTTGCAATGAATTTATTTTCTTTATTATATAGTATC AATTTTATCACACAGTGACTGAATAAATTTCTTCTTGTTGATGAACAATTAACTGAATATTGTTAATGATAATAATCTAA ATGTTGATACTTTTGAATATTTTGTATTTACTAAGTCTGCCCTTTTTGCTGTATTATTTGGAGAATGTTGCAGTAGAGGT TTGGGTGCTGTGAGAGACCTTAGGAGGGGTGAAATTATATTGAGAGTTCCAAAATCTGCTTTGATGACTACAGAGAGTGT TATGGAAGATAATAAGCTCTGTCTTGCTGTCAATAAGCACTCTTCTCTCTCCTCAACTCAGGTTTCCTTCTTAACTTAGT GTGGTAATTTTGTTGCTGTTTACAATTGAATCTGTGAAAATGTACCAAGAACCTGTTTAGATAAACTTCTTTAGTTACAA GCACTTTTAGGAAAAGAGAAGTTAAAATGATATTGAATAATCATGATCTTTCTAAAGTACAGCTCTTGCATTAGCAAAAA CCATCCTGTTGCAAAGGTTAGAAAATGTTTTGGACTTATCGTAAGTTAAGGAACAAAATACTCATCTTTGTTGAAAAGCC CTCATAAGTTATAAGCTAATTCAAGCTGGGTCCAAAACATTAGGTTTTATTACCTTTCATTGGTTGTTGAACCAGACCAA GTATTTTATCTTAGAATTACTATAGTCTATAGGTATGTTTGAACTGAGCTCTGAACACACCTATTAATGGATATGGTTTC ATCATGTTGTTGTATTATTATTGTTGCTTATAATTTAGTCTTTTATGCTTTTGAACCTCTTATGCTTACTTCTAAGTTTG TGTATAATGCAGATATTGAGTGTTTGTTTGTTGTATGAAATGGGTAAAGGGAAGACTTCAAGATGGCATCCTTACCTCAT GCATTTGCCGCAAAGCTATGACGTGCTAGCCATGTTTGGTGAATTTGAGAAGCAGGCTCTTCAAGTTCAGTTTCTGTTAG AAATTTTAATTTATCTCATTAGGTTAGATTGTAGCATCTCAACTAATGGTATTTATCAGCACTCATTCCTACCTTATGTT AGAAATAATCTTTATGTTGTGACTGTTAGGTTGATGAGGCTATGTGGGTCACAGAAAAAGCTGTACTAAAAGCCAAATCA GAGTGGAAAGAAGCTCATGCTTTGATGGATGATCTCATGTTTAAGCCCCGGCTTTTAACATTTAAGGCTTGGGTTTGGGC TGCTGCAACGGTTCGAAACCTGGCCTTTTATACATATTATACAGCATATTTATATTAGTTTCGAGTAAATCACAAATCAA CTTTTTCTCTATCATTTAATCACATTTAAATTTTTTAAATTCTAGATTTCTTCCAGGACATTGCATATACCTTGGGATGA AGCTGGTTGTTTATGCCCTGTGGGTGACTTGTTTAATTATGATGCACCTGGAGAGGAGCCATCTGGTATTGAGGAGGTAG AGCATTTTCTATCTGATTCTTCAATCCATGTTGATGTATCAAAGGAGGATAATATCATGGTAGATGCAGAGCAGATTGAT TCTCATTCTCAGCGATTAACAGATGGTGGGTTTGATGAAGATGCTAATGCATATTGCTTTTATGCTAGGGAAAATTATAA GAAAGGAGATCAGGTATTGCACAACTCTTGCAAATTTTAACATATAAGTGGAGTATCTGTTTGCTTTCTGTTTTATTTTT ATATGGTTAAAGTTTATCTTCATTTTCCAGTTTTTATTTATCGTTTTACTATACTGTATTTGTCTTGTTTGAATTGCCTG TCCTTAGCTTAAGTTTATTCTTTATATCAAAATATGATGTTTATGCCCAATTGGTTAGGATTGTGTTTAGGAGCAGTGAT GCTTAATACTATCTTTTTTTAAGAGAAGTTTAGGTAGAGGGAGAGGCTACTTCATTTTAAGGTTGGGACATGTTATAAGT TTTGGAGAAGACTTACGAAGGACCTATTTTTGAAGGACCACTTGGAGGAACACAATGTAAGACCTACTAGTTGAACTAGT CCTTATTGGAGATGTTTAATGCAATTCAACTGTAGTCTAACTATGAAACTTATAAATGCTAGTTCAAATATGGGAGAAGC GTGTTGATAAATTATGTTTCAGCTCCGTTTTGAAATTCAACTCAACATCAGGCTCAATACATGACTGTGGGAGAGGCGTG TTTGGTGTTGATAAATTATGTTTCAGCATCATTTTGTTTTTTCTATATTTTGATTTGTCTTATCCAGTTATGTATTGCGA TGAAAGTCCATTCATGTTGCCCTCAACTAATATCCAAACACACTTAGAAGACAAGCTTATATTTAGGATATGCAGCTGTA AATATAACTGCTTTTGGTCTGCAGCTCTGCACATCAAATTTAGCATGAGATTATTACCAATTTATCTTTCCAAGAAATAT AATTTATCATAAATTCTAGGTACAAAGCATTACTTGTTTGTCTCCTAGATATTGACTGTGAAACTTTGCCAGGGCTGATG TACCTCCTTCCATTCGAATAATTTCATTTCTGTTTTCACTCTACCTTCTTTCCATTGTTTACATAATAGTGAATTATAAA TTACCTTGTTATCGCCAGGTTTTATTATGCTATGGAACCTACACAAATTTGGAGCTCCTTGAACACTACGGGTTTCTCTT ACCAGAAAATCCAAATGACAAAATTTGTATCCCTTTGGAACCTGCTATATATTCTTCCACTTCATGGTCTAAGGAATCAC TCTATATCCATCAAAACGGGAAGCCTTCCTTCGCACTACTAGCGGCACTGCGATTGTGGGCAACCCCTCAAAATAAAAGG CGGTCGGTTGGACATCTTGCATATTCTGGCTCTCAACTCTCTGCCGACAATGAAGTTTTTATAATGAAATGGCTATTAAA AGCCTGTGGTGCCGTCTTAAAGAATCTGCCAACATCTATTGAAGATGATAACTTGCTCATGAATGCAATTGATAGTCAAG ATATTTTCATGGAGTTCACAAAACTCATGTCTTCCAGGGATGAGGTTGATACCTTCTTAGAAGCTCATGATATAAAAGAT GCTCATGGTTGTACAGATACACTTCTATCTAGAAAAGCAAGAAGGTCCATGGATAGGTGGAGATTAGCTGTCCAATGGAG GCTTAGGTATAAGAAAGTCCTTGTTGATTGTATATCTTATTGCAATGAGAAACTAAATTCTTTGATGAAATAGTGCTCTG ATGGACTTGGTTGCAATAGTGAACTCTTTTCCTTTTCTGTTATCTTTCTTGAGATTTTAGTGGAAAAGCTTAAATAATAA AAACAGGAAAGCTAGCCTTATGCAACAGTACTTTTGGTTTGACCACATATATCTTCCGTGGGAAGCAATACTGTTCAAGC TGGAAGTATCCATATTTTTGTAGGATTAGCTCTCTCAACGTGTCAGC
CDS sequence (LotjaGi1g1v0100500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCAGCAACAAGGAAGCCTTGAAAGCTTCTTATCATGGGCAGCACAGCTTGGAATATCAGACTCCACAAACACCGA CCAACCTCAACACTCTCTCTCTTGTTTGGGCCATTCTTTATGTGTCTCTCTCTTTCCTCACTCTGGCGGTAGAGGTTTGG GTGCTGTGAGAGACCTTAGGAGGGGTGAAATTATATTGAGAGTTCCAAAATCTGCTTTGATGACTACAGAGAGTGTTATG GAAGATAATAAGCTCTGTCTTGCTGTCAATAAGCACTCTTCTCTCTCCTCAACTCAGATATTGAGTGTTTGTTTGTTGTA TGAAATGGGTAAAGGGAAGACTTCAAGATGGCATCCTTACCTCATGCATTTGCCGCAAAGCTATGACGTGCTAGCCATGT TTGGTGAATTTGAGAAGCAGGCTCTTCAAGTTGATGAGGCTATGTGGGTCACAGAAAAAGCTGTACTAAAAGCCAAATCA GAGTGGAAAGAAGCTCATGCTTTGATGGATGATCTCATGTTTAAGCCCCGGCTTTTAACATTTAAGGCTTGGGTTTGGGC TGCTGCAACGATTTCTTCCAGGACATTGCATATACCTTGGGATGAAGCTGGTTGTTTATGCCCTGTGGGTGACTTGTTTA ATTATGATGCACCTGGAGAGGAGCCATCTGGTATTGAGGAGGTAGAGCATTTTCTATCTGATTCTTCAATCCATGTTGAT GTATCAAAGGAGGATAATATCATGGTAGATGCAGAGCAGATTGATTCTCATTCTCAGCGATTAACAGATGGTGGGTTTGA TGAAGATGCTAATGCATATTGCTTTTATGCTAGGGAAAATTATAAGAAAGGAGATCAGGTTTTATTATGCTATGGAACCT ACACAAATTTGGAGCTCCTTGAACACTACGGGTTTCTCTTACCAGAAAATCCAAATGACAAAATTTGTATCCCTTTGGAA CCTGCTATATATTCTTCCACTTCATGGTCTAAGGAATCACTCTATATCCATCAAAACGGGAAGCCTTCCTTCGCACTACT AGCGGCACTGCGATTGTGGGCAACCCCTCAAAATAAAAGGCGGTCGGTTGGACATCTTGCATATTCTGGCTCTCAACTCT CTGCCGACAATGAAGTTTTTATAATGAAATGGCTATTAAAAGCCTGTGGTGCCGTCTTAAAGAATCTGCCAACATCTATT GAAGATGATAACTTGCTCATGAATGCAATTGATAGTCAAGATATTTTCATGGAGTTCACAAAACTCATGTCTTCCAGGGA TGAGGTTGATACCTTCTTAGAAGCTCATGATATAAAAGATGCTCATGGTTGTACAGATACACTTCTATCTAGAAAAGCAA GAAGGTCCATGGATAGGTGGAGATTAGCTGTCCAATGGAGGCTTAGGTATAAGAAAGTCCTTGTTGATTGTATATCTTAT TGCAATGAGAAACTAAATTCTTTGATGAAATAG
Protein sequence (LotjaGi1g1v0100500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEQQQGSLESFLSWAAQLGISDSTNTDQPQHSLSCLGHSLCVSLFPHSGGRGLGAVRDLRRGEIILRVPKSALMTTESVM EDNKLCLAVNKHSSLSSTQILSVCLLYEMGKGKTSRWHPYLMHLPQSYDVLAMFGEFEKQALQVDEAMWVTEKAVLKAKS EWKEAHALMDDLMFKPRLLTFKAWVWAAATISSRTLHIPWDEAGCLCPVGDLFNYDAPGEEPSGIEEVEHFLSDSSIHVD VSKEDNIMVDAEQIDSHSQRLTDGGFDEDANAYCFYARENYKKGDQVLLCYGTYTNLELLEHYGFLLPENPNDKICIPLE PAIYSSTSWSKESLYIHQNGKPSFALLAALRLWATPQNKRRSVGHLAYSGSQLSADNEVFIMKWLLKACGAVLKNLPTSI EDDNLLMNAIDSQDIFMEFTKLMSSRDEVDTFLEAHDIKDAHGCTDTLLSRKARRSMDRWRLAVQWRLRYKKVLVDCISY CNEKLNSLMK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 8 | 310 | 303 | 8.5E-42 | – | |
| PANTHER | 9 | 488 | 480 | 3.1E-137 | – | |
| PANTHER | 9 | 488 | 480 | 3.1E-137 | – | |
| ProSiteProfiles | 38 | 292 | 255 | 11.376 | ||
| Pfam | 50 | 292 | 243 | 5.4E-9 | ||
| SUPERFAMILY | 302 | 486 | 185 | 2.22E-8 | ||
| Pfam | 340 | 474 | 135 | 4.8E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0100500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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