Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0100700.1

Overview

Field Value
Gene ID LotjaGi1g1v0100700
Transcript ID LotjaGi1g1v0100700.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Ras family protein; TAIR: AT5G45130.1 Ras small GTP-binding family protein; Swiss-Prot: sp|P31583|RHN1_NICPL Ras-related protein RHN1; TrEMBL-Plants: tr|I3S087|I3S087_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0100700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:15290430..15296310) extracted from Lotus japonicus Gifu genome v1.2.

CTGCATTTTCTTAATTGAAATACGTACTGAAGTTAAAAAAAAGAAAAGAAGCAAAATTGGAATCTAACAACGACATAAAA CATTTTAGAAAGTAACCAAATAAAAATACTTTAGGAAAAAAAGTTCAAAAGCGCGTTTACACGCAAGCAACCACCGCAGG CAAAGAGCAATAAATAAAACTGTGAGAAGGACTGTGTTTTTGGCTTCGTTCTTCTTCATCATCAATCATCATCTTCTTCC TCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCCTTCATCATCTTCTGATTTCCAATTCCTTCTTCTAGAAGCTTCTCTCC TTTCCATTCTTCCCTTCCGATCGTTCATGGCTACGGTCGGACACAACAATCTCAATGCCAAATTGGTCTCTCTCTTTCTC ACTGTTCTCAATTCCCTTTTTGTTTAATTTTCGTTGAATTCGATTTCTTGTTTGGCTAATTTTGCTGAATTGAATCTCAG GTTCTCCTCGGGGATATGGGTACTGGAAAATCCAGCCTCGTTTTGCGTTTTGTCAAGGGTCAATTCCTTGAATTTCAGGT TATTTCCTATCCCTTTTGATTTCTCTGTTCAATTCGCTGCTCGCCAAATTCAAATGTTTACGGATAATTTTTGGGATTTT AGAGGGGAATCAAGTGTAGTGTGTAGTTCGTGGGTAACAGGTGTTGTTGCTTGTTCAATTTTGTATTTGATGCTGCTTGT GGCATGAAAATTGTGTTTTTTTTAGCCCCTTTTGCTTTGTTTTGCTGTTGACTGAATAGAAAATGGGGTTCTACTGTTTC AATTTTCAAATGAAATGTTTCTAAAAGTTATGAGCATGTTGGAGGGAGAATAATAGAGAAATTTCAGCTGAAAACAAAGC TTTCCGTCCCAATTTGATGACAATTTTGCAGCTTTAGAGCTTAAAATGGGAAAGTTTTTAGTATGCATTGTGTAATACTC TTAACTTGGTAGATTTGGTTTCAACTTTATATCTTAGATTTAATCTACTAACATGTATTGTTATGCAGTCAATGTGTTAT GTTTAGTGTACTGAATGTGATAGTATTACTCTCATAGTACATTAGATTTTAGAAACTTTCTTTAAAATTGGGATTTGCTG TACCGAATTTTCAAACATTTATTTGATTTTTTTTCACAATAAATTTTTAGAAGTTCAATAAATATAATAAGCAGCCAGTA AATGCTAACCTCGGAAGCATGGGTACTTCATTTTGGCTCCCGTACCTGTTCCGGGTGTGAATCCGTACCCGGAACTCATT GGTACTTGTAAATACATGCCGCGTACGTGCCGAAATAATTTTTCAATAAAACGAAGGGTACTTATTGGGTACATTTTAGC CAAAACAAATTTTTTTTTTATCAGTTTTTATTTTACTTTTATATATACATGAACGAAACCCTATCTATGTAACACATAGA AAACCGTAACACCCTACCTGTGTACCTAATCTACATCAATCAACTGTCTCGTTCCTACCTGGCCAATGCTCGCCTGCGTT GGTTGATGGTTGATAAGTTACTAAGTTCGAGTTTCCTTTCTTAATTCGTGTACTAGTTTCCATTTCTCCGATTTATTCTA TTAGTTAGTTTAACAGCAATGTATATTTTGTTTTATTGTGAAGATATTTTGTTGACTTGTTGAAAATATGATCTCCTTAT ATACACATGCGCGCATACACTCACCCTTACACACACACACACATATAAAAACGTACTCGTACCTTAATTTTTTTGAAAAT CTTGTACCCGCATCTGTGCAGCATAGATGCTAACAATTCACCTTGGGTACCTGTATTCATGAGAGAAATATGGGTATCAG AGTAATTTCCCTTAAATTGATACCTCATAAAAAGTGTGGGTAGGGTTGGTGGGGAGAGAGTGAGAGATTATTTCTTCTGT TTATGGTAGTGTTGACATCATTGGTTATGGGTTCTTAGAGCTGTTACTTATTGCTAAATACACACACGTGGATATTATGT TGCTGAATTTATGTGATCTGTTTGGGAGACAGGAATCAACAATAGGGGCAGCATTCTTTTCACAGACACTGGCAGTAAAT GATGCCACAGTGAAATTTGAGATTTGGGACACAGCAGGACAAGAGAGATACCATAGCTTGGCTCCCATGTATTACAGAGG CGCTGCTGCTGCTATCATTGTCTATGACATTACTAGCTCAGTATGATTTTTTTGTTTTTAATATTTCTGATTACCTGTTT ATATTGGTAACATTTAATATAATATGACCATCTGTGTATATTAACATAATAATATGCCAATGACGGGGAAATAAGGAACA TGAATGAAAATTTTGCTTCCTGTTTCTGTTTGCACTTTCTGATTAGTCTCCAAATTACAATGGGAGTAGTAAATCTTATG CTATTGAGGCCAAGCTTTACTGTTTTGAGTATGGGGATGAACAGGTGCTTCTTTTACTGCTTTTCTTACTAATCCTGTAG TATAATTCAATAAGTAAAGAAGATAAACATATCTCAGGCGGCAGAGTAGCAAGTCTAGAGCCTTAAAAGTGATGAGTTCC AATTCTTGACCAATTCATTTTTATTGCAAGATATTCCTCTTCAGCTGTTCATGTGTTTGATCCTTATCATGGAATACATG ATTTTCCTTCTCTGCCAAAAAACCTTCGGCAAGACATTCCAGAGAAATCCTAAATCTTTGTTGTATACACAGGGTCCACT CATTCTATCTAATCTTCACTAATTGAAACTCATGCTTGTTAGGAAGATATTGATGTGAAAGAATTCATTCAATCTTATGA TCTGTATATTCATTTTCCTTTCGTTAGGTTTGAGAGACCATGTTTTGATATTTTAGCTGTTTACTATTTAATGTGGTTTT ATATGATTATTTATATCTTTCAATCACAGGATTCATTTACAAGAGCTAAAAAGTGGGTCCAAGAGCTTCAGAAGCAAGGT ATATTTGCTGATTGGTTTTGAAGTTTCTTATGCTCCTTTTAGGAGAAATAAAAAGGAAAACCGATCTACTTATTAACCCT TTACAAACTTCTGATACAAACTATCTGTAAAGCAATCTTGACCATATATTTAAATATTCCATTTGTGAAATTTGTTTTCT TTTCTGTTTTTCATGAACTTGACTTTGGAATAAATAACATTAATTGTTCAATGAAACTATAATCATGTTTTATAATAGCC CGAACTTGGTTGGATAATACATATGAATGATGATGTGAGAATGATTAATGCATGAGAGAAATGTGAACAGTTAGGCAGAT TTCCAAAGAAACAATTGATCAAGTCTTGTGAGAAAAAAGAGGAGAATAGTTGCTTTGAAGTATTATAACAAACATGGTCT ACTTTTGAACTTCCCTATAGTTAAATCATTAGATTCTCAAATAATGCATTCATTTTGGTGTTGTTGTAGGGAATCCTAAT ATGGTTGTGGCCCTAGCTGGTAACAAATCTGACTTGGAAGATAAGAGGAAAGTGACGCCTGAAGTAAGTGTTATAGTGAT TTCAATTTTCCTATTAAGGCCTCATATTAGCTATAAGAATTATAATTTCTTTAACAGTATGGCCAATTACCTGCAACTAT GATGAAGCAATTTTTTTTCCTAATAAAATTTCAAATGATGGTTTCATTTGATACTTTAAACGTTGTTGGTGCCTGATATT TTTTTATTTTTGGATACTATTTGATGTTAACTTCCAGGATCTATAGCTTTGTATGAAATAAAACCTGTTCCCTCTATAAA TCATGTATTGAGTTGTCAAATACATGAATTCTGCATACACGTCCGACTGGGACTTTTTTGCTACAGTTTAGATGTTCTGA GCAGTGAGCATATTCATGTGCAGCTCTGTATATTCATTCCTTGCATCTTGAGAACTTATATGCTAATAAACCTAACATGT TCACTTCTTCTAAAACTGGTGGTAAAGTGTCTTATTTCCATGCGTTGCAGCTTGGAATTAATCTTCTTACCAAGTCTTTT GATATTAGTGTTCTTTTAAAATGAAAATAAATAAGCTTAACTTTGAAAGGTTTATCTTTGAATTTATCTCATTACCAAGT CTTTTAATATTAGTGTTCTTTTAAAATGAAAATAAAATACACTAACTTAGAAATGTTTATGTAGAGTGATTCTGTCTTTA GAACCAACTTATCAGCTGTGACTCTTGTGAAATGTAGGAAGCACGCGTATATGCTGAAGACAATGGTCTATTTTTCATGG AGACCTCTGCAAAAACTGCTGCCAATGTTAATGATGTATTTTATGAAATAGGTGCGAGTCTTTTCCTATTACATCAACTT AAGGATGATTAATAGTGCTTTTTCTTTATTTTAACTTAATTGCATGAGAAAAATCAAATAATGGAGAACAAGAGAACATG ATTTAAGTCAGTCCAAGGAGAAGGAAGGATGCAAACACTTCTTTTGAGGAAATATCTGTCCCTGCTTTGCTTTGCAGGCC AATAGACATTTCCTTGGTCTTCACTACTGATTGAATATACTGTTTGTGAACCAAATGAATTTATTATTCCTATTCTGGTT TTGCTGAATCAAAGGCTCATATGGGCACCTGATCTTCAATTGAATTGCACCAAATGAATGTGCTTTTCCTGTTTTCTCGA CGTATATAGCTTTTCGATGAATGACATTCTATCAAGCATTCATGAGCAAGCAAATTAGTTGATGAATTTGTTAGGCCTAA CATGTAGGACTTAGCTCACTTAACTGTCAACTTTTCCTTATAAATTCTAGAGTTTTTTATATGGTTTTTATTTTGCTACA AAAGAGAGGACTGTATTATGTATAGTACACTCAAAAAAGAGAAATTTACTGTGGTATGGCCATATTATCTTATCTTGCAT GTGCTTTTTTATTGTACTTTTTTTTGTTGATAAATTTGATTGATTGTACTTCTTTTGTGTCATAAACTGTTGAACTTTGT ATGCTGCTCAAATAGTAGGGCTTAGGTAGAGAAAATGAATATTTGTGTGTAAGATGATTTGCTCAAATATAAGATGATTT TTTAACATTGATATTTATGTGTAATAAACAATGTCATTCCAAAATAGGGACTCACCCAGATTGGGTTTCCACTAGGATCC TCTGAAAATATCTTTAGAATATGTTGTGAAGATATGCACATTTACTCTGAAATACTTTCAAGATATTCTGAGATCATATT CTAACACATACGTTGTTTGATTTGCATTTTCAACAGCCAAGAGGTTACCAAGGGCACAGCCTGCGCAAAACCCAGCAGGG ATGGTTCTTGTTGATAGACCTGCAGAAGGATCCAGAGCTGCATCATGTTGTTCATGATTCTGTATCCTGTACAACCCGGA AATGATCCTCTCAACATTTTTAAAAAATTAATCAGGTCAAGGGTCAACCTTTAACCATTGATCTCTATGTGTAATAATTA ATGAAATAAAATAATGGTTAGATGGTGAAACTTTTCATGATAATTTTTTTAACAATTGAGAGGATCCATTCTCGTACCCC CGATAGTTGATCCTGTTTTCTTTGGTTTGTAAATACTGTACGCACTTTGATTATGTGCAACTCCAGCAAGTTTATGGGCT ACCTTGATATGGATGCGAATTATATAATACAACTTGTTGGTACAAAATGAATCGCTTGAATAAGTACTCTATACTTTGTA TCCCTTGTTTTTTGTTGCCTTCAAGTGAAATGCTAGAAAGTTCAGCTTATTGGCAAGAATGGGTATTTTCCTGTCAGATT TTGATGATAGGAATATATGGAGTTTCTGCATCATGATCTCGTTTTCTAAATGGCAAGTATGTCGGTTTTATCAGAATTTA TATCTATATTAAAAGAAATAAATAAATAAAAGACTTTTACA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0100700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTACGGTCGGACACAACAATCTCAATGCCAAATTGGTTCTCCTCGGGGATATGGGTACTGGAAAATCCAGCCTCGT TTTGCGTTTTGTCAAGGGTCAATTCCTTGAATTTCAGGAATCAACAATAGGGGCAGCATTCTTTTCACAGACACTGGCAG TAAATGATGCCACAGTGAAATTTGAGATTTGGGACACAGCAGGACAAGAGAGATACCATAGCTTGGCTCCCATGTATTAC AGAGGCGCTGCTGCTGCTATCATTGTCTATGACATTACTAGCTCAGATTCATTTACAAGAGCTAAAAAGTGGGTCCAAGA GCTTCAGAAGCAAGGGAATCCTAATATGGTTGTGGCCCTAGCTGGTAACAAATCTGACTTGGAAGATAAGAGGAAAGTGA CGCCTGAAGAAGCACGCGTATATGCTGAAGACAATGGTCTATTTTTCATGGAGACCTCTGCAAAAACTGCTGCCAATGTT AATGATGTATTTTATGAAATAGCCAAGAGGTTACCAAGGGCACAGCCTGCGCAAAACCCAGCAGGGATGGTTCTTGTTGA TAGACCTGCAGAAGGATCCAGAGCTGCATCATGTTGTTCATGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0100700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATVGHNNLNAKLVLLGDMGTGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY RGAAAAIIVYDITSSDSFTRAKKWVQELQKQGNPNMVVALAGNKSDLEDKRKVTPEEARVYAEDNGLFFMETSAKTAANV NDVFYEIAKRLPRAQPAQNPAGMVLVDRPAEGSRAASCCS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51419
6 199 194 33.075 –
Gene3D
G3DSA:3.40.50.300
6 199 194 2.6E-63 –
SMART
SM00173
8 174 167 6.9E-30 –
SUPERFAMILY
SSF52540
8 176 169 1.08E-54
IPR027417
PANTHER
PTHR24073:SF1001
9 199 191 3.7E-97 –
PANTHER
PTHR24073
9 199 191 3.7E-97 –
CDD
cd01860
10 172 163 1.16778E-116 –
TIGRFAM
TIGR00231
11 167 157 7.4E-28
IPR005225
PRINTS
PR00449
11 32 22 1.1E-36 –
SMART
SM00175
11 174 164 4.3E-82 –
Pfam
PF00071
12 171 160 4.6E-60
IPR001806
SMART
SM00174
13 174 162 3.6E-11 –
SMART
SM00176
16 200 185 1.8E-6 –
PRINTS
PR00449
34 50 17 1.1E-36 –
PRINTS
PR00449
52 74 23 1.1E-36 –
PRINTS
PR00449
114 127 14 1.1E-36 –
PRINTS
PR00449
149 171 23 1.1E-36 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0100700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…