Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0101000 |
| Transcript ID | LotjaGi1g1v0101000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CASP-like protein; TAIR: AT1G17200.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|C6TCJ2|CSPLA_SOYBN CASP-like protein 2A2; TrEMBL-Plants: tr|I3T3R6|I3T3R6_LOTJA CASP-like protein; Found in the gene: LotjaGi1g1v0101000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:15333989..15339446) extracted from Lotus japonicus Gifu genome v1.2.
GGTTGGAGCAAAATCTGCTTCAGTTCCTTAGGAGTTCCTTAAGTCTGATGTGTCAATACAGGCTCACAGAAATAATGTAG AATATTGCTGAATAATGTGTAAGAAATCAAATAAGAAACTTTAGCATTGGAGTTGCCCTTAGTAGCATAACACTCACACT CATGACAAGCTATGGTCCTATTCTTATCTACTTGACTTGTCAAGTTACCTTTGTAATGCGTAGCTTCCCTATAATTAATG ACATGATGGGACATTCAATGCTAGCTACCCCAGTGGTTGGCTGTGCCTGTATATCACAGTGATGAAATTCAGCCAGTTCC AAGTCCAATTTACCAAAGCCTTAACAACTATGGAGAAGGGAAATGTTGTGGAAGCAACAACAAGATCTTCCATGAGACAT GGTGATGAGGAAATTGAAGGCAACACCAACATCTTACGCATTGTGGAGACGTTCCTGCGTTTGTTTCCAATTGGTTTGTG TGTGACGGCGCTTGTCATTATGCTTAAGAACTCTCAGGAAAATGAGTATGGCACGCTTGACTACACTGACCTTAGTGCTT TCAGGTATCAACCAATGCAATTTTTCTGTTTGAAATTTCATATATATAAACCATGAATTGCTACTCAATGCATGTTTGGA TCTGCATGATATCGCCCAAGATCGATTCTGCTCTAGGGACAATATCTTCACTTTTTATAATATGTTTGGTTCCATGGTGA AGTATTCTAGATCCAGCTAGACTTATTTCAGAATGTTTCAAGCCTTAAGGTGGAAAACCAGGACAAAACCAAAATTAGAT GGATTGATGAGAGTTAAGAGAAGTTGCTTATGTCCACTTGATTTTAATTTTACCGTGACTTTCTTTCGTGTATCCAAATC ACGACCAACATAAGCAATTTTCATACCTTTAATCTCACTATAATTTTTTACTATTAATTTTATATCCAGACATGAAGTAA AAAAAAAGTGAGTCGAATTCTATGTGAATTTTAAAATTAAACATGTTTATATAAATTTTTATTTGTCAAAATCAATTATG TCATAAAGAGACCACAAGTACATAAATTTCTCACTAAAATTGACTTTGGTTTTAAAATCAAATGTACTTTTCCAGAATTG ACTTTGTTTGAGTTTGGTTTAAAATCAACTGTAGATAGAAGTTTATACTAGTAGTAGTAGCTTCAGTATTTTAAATCTAA TTCTGTGAAAAAAAACTCACCCCAAAAAAAAAATACTATTATGTGGTTTTGAGGTGTGCTTGTGGTTTGTGAAGCATGAA ATATATTGGCAAGATAAATTGCAACTTACAGTTCGGGATTTTAATATCAATATAATGAACCGGAATTCTTGTTTTGGCAT CTGAATTTTGTATCTTGTAGGTATTTGGTGCATGCAAATGGCATTTGTGCAGGCTATTCATTATTCTCAGCAGTCATTAT TGCTTTGCCCCGCCCCTCCACCATGCCAAGAGCTTGGACTTTCTTTGTGCTTGACCAGGTCATTTAATTTCTCTTTTCTT TTTTAAATTTTATGCATGAATGATTGGGGTGATGTAGACTGGTTCTAAAACTGATAAGGTTGTCCACGGATTGAGTTAGT TTGAAATAAATAAATCTGAACTGATCATATTTAATTAGTTTGGTTTGAGTTCTTCAATTTTATTCAATAAATCTGAACCA AGCCAATCTAATTAAAGTCAGGCCAGTTTGGTTTGGGTCATGAGGCTGGCTAGTTAGTTTCAAAATGTCGTTACCCATTC AGGAAGCGGTTGCATGTCACTCCTAACGGGTCTAACTCGCTTACCACTAAACCAATATTTTAGTTCAAGTTGATAAATCA AAGTTTAATCATTATGCTTAAAGCTTTTATGTATGAAATTTTGAATTTAATAGTCTCTTGTTCTTCAAATAATTTATGCA GTAGTCAAGTCATTTCTAAACTTGGAAGTTCTAGTGGAAAGTTACAAGTTCTATTCCACATAATTACAAGCAATGTATGG AAATACCACTCCTATCCATTTTATCCGGTCATATAATGGATGAGGGGATAGAAACAAAATGAATCCTATCTGGCACTTCT TTCCAACATGTCTCAACTCTCAATCCAAAATCTTAACAATTTAATTTTCATATCCAAACGACTAAGACTGATGAAAAAAA CTGAATTGGTCAAAGTGGGGTATTATGGGTTTATTATATGGGTGTAGCTAGAGACTGCAGTATGGAGGAGATGATCCCAA TAGGGGATAGAAGTGAAAAGTGGATGTTAAGAGAAAACATGAGTGAAAATGTATAGCTTTATGTTGTAATTCTTATGTCT AAAGCAAGTGCAAAGATAAATTTTCCAATTCATGTATCATGCAACAAAATATCATCAGCAAGACAACTTCAAGAGCTAAA TATGCTTCTATATATGTTCCCAGTTGCTTACATACATAATCCTGGCTGCCGGAGCTCTGTCAATGGAGGTGCTGTACCTG ACTGAGAAGGGAGACCCTCCAGCAGCCTGGAGTTCAGCTTGTGGGTACTTTGGTCCATTTTGTCACAAGGCCACAGCATC AATAGCTATCACATTTGTTGCTGTCATTTGCTATGTTGTGCTTTCACTCATTTCCTCCTACAAGCTCTTCAGCAAGTATG ATGCGCCAGCACCACCAATGAGCAACTCCAATAACAATAACAAGGGCATTGACATTGCTCCTTTCCATGGTTAACCCTAA ACTTTGTGCTTGTGGTATGCTGGTGAACACTAATATACAGCTATGTATATGAAGGTGCATTGGTCTGGACTCGGTTAAAC ATGCTCATGGTTTGGATAAACACAAACTTGAAGTGCTTCTAAACTAATAGCATGTTTGGTTCATGTTTAACTTTTAATGA TCACTTCTTAGACTACAAGAGCTAATAGAAGTAGCTTATCTTAGAAGCACTTCTCATCGCAACATGAAAATCTATCGAAT TTCCACATGAACATTAAACAACATCAGAAGCATGCTCTTTGTTGCAATGTCTACCATGTTTGGTTATCTAATTGGAGAGG GAACATATTAAAATGGAACATATATAAAATAGTGGAATTGGATGAATAAAATGAAATTTGGCATTTATTATTATAGAATA AAGAAAATTATTTGTTTCATCTTGATTCCTCCAAATTGAAGCAAAAGATAAAATGGAATACTGAATGAAATTGAGTGTAA TCTAGCAGGATCGAAGATGTGTCAGCATGGCACATTATGTTTGGTTATCCAAATGGGGAGGGAAACATATTAAAATGGAA TTGGAATTGGATGAATAAAATGAAATTTGCATTTCTTATCAAAGAATAAAGGAAATTACTTGTTCCATCTTGATTCCTCC AAATTGAAGCAAAAGATAAAATGGAACACTGAATGAAATTGATTTAATTGAATGTAACTTAAGCTGCGTCAGCATGGCAA ATTATTGGGATCCATATCCAAAGCCCTCTTTGAAACTCAAAACTTGTCCTTATTGTAATATAAAAAGTCTATCCAGATTC CAGAAAATCGAACAGTGAGAACTGAGAACACATTTTGAAACTACATTTCCTAGTCTTTGGCTATTTTATTTAATAATTCA CCAAACACCAAATTGTCAAAAGGGTCTGACAAAAAGAAAGGTTAAAGCAACAACCAAATCAGTGGCTAGCAGGCTGATTG AGGAGAGTCCATCCAAATGAAAGTGTGCACAGCATAAGCCCCAATATCGCCACAAAGTTATATTTCCTGCAAGCATATTG ATTAATTTACACATCAATACTTTCACAAAAATATCAAATGATATAGCAGCAGTAGATTCAAAACCTCATTTGTCATTACC ACACGAAAAATCAAACAATTAGTTCATTATAAATTTTAATCACTTTATTCACATGATCTTTTTATTACTTATGGGGAAGA TCACTCCTCTAAATCCCTTCTTGCAAGTTTGGAAATCCTGCTAGAATTTATTCTAAAGTCGAAATCAATTCTGCAGAGAA GCTAGCTGAGAAGCTTAGCTTCTGAGAAAAGAGAAGCTGATATAAACATAGATTTATACTCCAAAACAAAATAGCATGTG CAAAGCAAAAGAAAGAGAGCAAACCCAATCTTGAGACGGTTCTCGGGTTGGCCAGTGGAATAGCCTGTGAAGTAGAAATA TCTAGAAACGGTATAAAGTAGTCCAAGGGCAGCACAAGTGGAAGGGTGCTTCAACCCTCCTAGAATCATTAGCATGAAGA AGATGGGTGCCATTTCCAAAGAGTTCTGGTGCCCTCTCTGCACTCACCAAAACAAACACATACACAAAACATTAACCACC CAATAAACCAAATAAAAACTACCACGAGAAACAACAGAAAAAAAAAATAAGGCTAACAAAACAGAGTGACAGTCTTACAA TTTTCAATACACTCAATCTTTTTATTGATGGAAATGAATGAATTCACTTCAGTCTAACTAAAATGACAAAAAATCTCAAT TTCACCCTTCCTTGGTGGATAATGGATATACTTCAGTGAATTTCAATTGAATGAATTCACTTAAGTCTAAATGAAATCAC AAAAATCTCAATTTCACCCTTCCTTGGGGAATATACTTCAGTGCATTTCAGTTGAATGAATTCACTTCTAACTGAAATAT AAAAATAAAAAAAATCTCAATTTCTCTCATCCTTGGTGGATAATGGATATACTTCAGTGAATTTCAATTGAATGAATTCA CTTCAGTCTATCTGAAATCACTAAAATCTCAATTTCACTCATCCATGGTGGATACACTTCAGTGAATTTCAATTGAATGA AGTCTAACTGAAATCACAAAAATATGAATTCCTTTCTTCCTTGGTGGACATACTTCACTGAATTTCACTTGATAACACAA TTTTTTTCAAAAGGGTATATCAAAAAACAAAAAAATAAACAAAAACTCAAAATCTTTCAGCTTTAAGCTAGAGAAAAAAA GGTACCTGAACACAGTTAAAGAGCTTGGCATCTTTGTTTTCAGACTCCAAAGCATAAAGGGTGGGATAAAACACCTTATA CCTGTGAGGAATTTCAACAAACACCTTGTAAGCAAAATCACCATGTCAACAAAAAAGGGACACAAAACAAAACAAAACAA AACAAAAGCAATTACTTCTTGCGAGCCTTGCCCACTTGAAAGCTCATGAAGAAATTGAGGAAGCAGTAGAGAACAAGAAC AATGGCTACAAAGCCGTAGCCTTTGGGAAGTGATTCCATGACTGTGACCATTTTTGAATGATGGGTTGGTTTGTTTGGTG TGAATCTGATGAGAGCAATGAAGCAGTGGTTACGGTTTGATGTAATTTTATTTTATTTTTTGAGCGGATATATAGGGTCC ATGTTTGTTGACTATTAATTATTTTGTTTTTTTTTTAGTGGTGGAACTTATAAAATAAGTTAACTTGTTGTGAAATACTA GGTTCTTTTGGTTTCTGG
CDS sequence (LotjaGi1g1v0101000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATTCAGCCAGTTCCAAGTCCAATTTACCAAAGCCTTAACAACTATGGAGAAGGGAAATGTTGTGGAAGCAACAAC AAGATCTTCCATGAGACATGGTGATGAGGAAATTGAAGGCAACACCAACATCTTACGCATTGTGGAGACGTTCCTGCGTT TGTTTCCAATTGGTTTGTGTGTGACGGCGCTTGTCATTATGCTTAAGAACTCTCAGGAAAATGAGTATGGCACGCTTGAC TACACTGACCTTAGTGCTTTCAGGTATTTGGTGCATGCAAATGGCATTTGTGCAGGCTATTCATTATTCTCAGCAGTCAT TATTGCTTTGCCCCGCCCCTCCACCATGCCAAGAGCTTGGACTTTCTTTGTGCTTGACCAGTTGCTTACATACATAATCC TGGCTGCCGGAGCTCTGTCAATGGAGGTGCTGTACCTGACTGAGAAGGGAGACCCTCCAGCAGCCTGGAGTTCAGCTTGT GGGTACTTTGGTCCATTTTGTCACAAGGCCACAGCATCAATAGCTATCACATTTGTTGCTGTCATTTGCTATGTTGTGCT TTCACTCATTTCCTCCTACAAGCTCTTCAGCAAGTATGATGCGCCAGCACCACCAATGAGCAACTCCAATAACAATAACA AGGGCATTGACATTGCTCCTTTCCATGGTTAA
Protein sequence (LotjaGi1g1v0101000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKFSQFQVQFTKALTTMEKGNVVEATTRSSMRHGDEEIEGNTNILRIVETFLRLFPIGLCVTALVIMLKNSQENEYGTLD YTDLSAFRYLVHANGICAGYSLFSAVIIALPRPSTMPRAWTFFVLDQLLTYIILAAGALSMEVLYLTEKGDPPAAWSSAC GYFGPFCHKATASIAITFVAVICYVVLSLISSYKLFSKYDAPAPPMSNSNNNNKGIDIAPFHG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 50 | 50 | - | – | |
| PANTHER | 36 | 210 | 175 | 5.1E-83 | – | |
| PANTHER | 36 | 210 | 175 | 5.1E-83 | – | |
| Pfam | 45 | 183 | 139 | 1.8E-37 | ||
| Phobius | 51 | 69 | 19 | - | – | |
| TMHMM | 51 | 68 | 18 | - | – | |
| TIGRFAM | 52 | 194 | 143 | 4.9E-29 | ||
| Phobius | 70 | 88 | 19 | - | – | |
| TMHMM | 88 | 110 | 23 | - | – | |
| Phobius | 89 | 110 | 22 | - | – | |
| Phobius | 111 | 121 | 11 | - | – | |
| Phobius | 122 | 146 | 25 | - | – | |
| TMHMM | 122 | 144 | 23 | - | – | |
| Phobius | 147 | 171 | 25 | - | – | |
| TMHMM | 171 | 193 | 23 | - | – | |
| Phobius | 172 | 190 | 19 | - | – | |
| Phobius | 191 | 223 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0101000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…