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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0105200 |
| Transcript ID | LotjaGi1g1v0105200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor, putative; TAIR: AT4G27950.1 cytokinin response factor 4; Swiss-Prot: sp|O04682|PTI6_SOLLC Pathogenesis-related genes transcriptional activator PTI6; TrEMBL-Plants: tr|A0A0K2CTI3|A0A0K2CTI3_SOYBN AP2-EREBP transcription factor; Found in the gene: LotjaGi1g1v0105200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:16243419..16245873) extracted from Lotus japonicus Gifu genome v1.2.
ATAAAATCTAATTTCTTTCTCTTGACTTATATTTTGTCTTTTTCTCTCTAGAACCAAACATGGTGTTAGTGATTAATTGT GGTGAATAAGAAATGTAGTAGGAACATGTGATATAGCATTTGTGAGTGGAATGCTTACACAAGAGTAGAATTATAGTTGA GAGAAACTTGGGGTTGGGACACCTCAACAAGGTACAGCTGGAACCAAACTTTTCTACTCCCGACAACGACACACTCACGA GTCACGACCCTCCACTCCACTCCACTCACTCACACTCCATCCATCCATTTTCCCTTCACTCCCCCCATTCCCCAAACCCC ACTCTCACGAGATAAATATTTTTCTCTCTCTCTCAAATCCTCCAAATACATTACCCCATGCACACTATAAATTCTCTTTA ATCCTACCCCCTTTATCTCGTTTTCTTCTCCATTTCTCCCCAACTTCCCCTCCTTCTTCTCTCTCAGTCACTTCACTACA CCTCTCTCTCTCCTTTCCCGCCAAAACCCCTCTCTGCTCTCCTTATATCTGCTCTTTTGTCAGTCTCAAAGGGACAACAA ACAAACCAACCTTATTCTCTCACTCTCTCACTCACTCACGCTCATCCCTTGTGTCTATCTGTGTTACCTTCCATCAAAAG TGGACTAAGATTTTTTTCTTTTCTCATTTTAACAAAGAGCATCCTACCAAAGTTGGCTATATTCCCCTCAATTTCTCTCT TTTCCCTCTCTCAATTGGAATATTAATCTCTAGAGACCAAAAGCAAAAGTTGCAATTTCTTTTTGTTCAACCCATATCTT GGTTTCTTTCTGCATCATCACAGAAAAAAAGTTCCTAATTCCTCCAAGAATATCTACTTGTCCACTAGATCCACTTTTCC CCCTCAACCTTCCAAAGCATCAGCATCTCCTTCCACACCCTTAAACCCTCTTTGCTTGTTTGATTCTCTCCATTTCAAAC ACTGCAAAACCTTCCATTTTGCCCCTCCAACAAACACAAACAAACAGCCTTTGAAAAAAACACCCATTTTTAGACATGTC CGTACAGTCAACACTGAAGACCAAGAAGCTGATCAAGCTAGCAACCCCAAGTTCAGTTTTTGAAGACGACCCACCATGCA AAAGGAGAAGGAAAACCCAGAAGAAGCTTGTCCGGATCATAGTCACTGACCATGACGCCACTGATGATTCCGACTCTTCC AGCGACGGAGAAAGAGCAAACACCACCGCCACAAAGAGAGAAACCACCACCTTCACCGTCAAAATCAACTTCCCCTTCAC AAACACCCTTTCTTCTTCTTCCCTATCTCCCTCTTCTTCATCCTCTCTCTCTTCTTCCTCTGAACAAAGCCTGAAGAAGC TCAAGAGGGTTAAGAAGCCAACAACGCCACCGTCTGCAGCCACGCGCCGCAGCCACAAGTTCCGCGGCGTCCGGCAGCGG CCGTGGGGGAGATGGGCTGCTGAGATCCGCGACCCGAGCCAGCGGAGGCGGCTCTGGCTGGGGACGTTTGACACGGCGGA GGAAGCCGCCACGGAGTACGACAAGGCGGCGGTGAAGATAAAGGGCCCCAACGCCGTCACCAACTTTCCGAATACTCCCA AGGAGGAGCCGAAAACGCCGACGGAGGAGCTAACAGCGCCTCCTCCGGTGTCTGACGGCGGTGCTTCATTCTCCGACGTC CTGGCCTCGCCGACTTCTGTTCTTCCATACGGCGGCGACTCGGAAACGTCGTTTAACGGTTTCCGTTACATCGACGTGGA CGCGCTGGGGCTGAGCATCGACGCGCCGTTAAGTTTACCGGACGTGGACGTTATGCTGACGTGTCACCAGAAGGAAGAAG CGTTCGAAGAGTTCAACCTCGACGAGTTTATGACGTGGCTTTACTAAATAAATATCCCAGGGGCATTTTTGTCTATTCAA TGATGCAGTTTTCGGTGTGCAATGTTGCGAAATTCCTCAACTGCCCCTCTCGTGAAGTTTTGTTGTGGTGAAAGAAGAGT GTAGACTGTAGAGAGTAGTGGTACAAATATAAATAGCGGCTATTATTATTATTTTTATTTTTTTTCGTTTGAGAATATTT GTCAGAACTTTATTATTTAATTGTGTAATTATTATGGATGTGGAAAAATAGGGAAAAAAACTTTGAAGTGTATTGACGAG TGCGTGAGAATTGAGAAGAAAGAAAAGATGATATCAAAGCAAGTTGGAATCTATTTTGTAATTTATATTATATTTATTTA TATATAGAAATGGACAATTATTATTAATATAAATAAATTTGGTCTTGTCAGAAGATTGATGATGGTTATTATAATTTATA GTACGTGTTTGTGGGAAAGTTGACACGTCGAAAGGTTGTCTCCTGAATCCAAAAAATCATATTTGAATCATTCTCTATTT CTAATTTCTAATATTTGTTTTTTAAAGATTTCTTTTACATTTTGGTTTGATTGGT
CDS sequence (LotjaGi1g1v0105200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCGTACAGTCAACACTGAAGACCAAGAAGCTGATCAAGCTAGCAACCCCAAGTTCAGTTTTTGAAGACGACCCACC ATGCAAAAGGAGAAGGAAAACCCAGAAGAAGCTTGTCCGGATCATAGTCACTGACCATGACGCCACTGATGATTCCGACT CTTCCAGCGACGGAGAAAGAGCAAACACCACCGCCACAAAGAGAGAAACCACCACCTTCACCGTCAAAATCAACTTCCCC TTCACAAACACCCTTTCTTCTTCTTCCCTATCTCCCTCTTCTTCATCCTCTCTCTCTTCTTCCTCTGAACAAAGCCTGAA GAAGCTCAAGAGGGTTAAGAAGCCAACAACGCCACCGTCTGCAGCCACGCGCCGCAGCCACAAGTTCCGCGGCGTCCGGC AGCGGCCGTGGGGGAGATGGGCTGCTGAGATCCGCGACCCGAGCCAGCGGAGGCGGCTCTGGCTGGGGACGTTTGACACG GCGGAGGAAGCCGCCACGGAGTACGACAAGGCGGCGGTGAAGATAAAGGGCCCCAACGCCGTCACCAACTTTCCGAATAC TCCCAAGGAGGAGCCGAAAACGCCGACGGAGGAGCTAACAGCGCCTCCTCCGGTGTCTGACGGCGGTGCTTCATTCTCCG ACGTCCTGGCCTCGCCGACTTCTGTTCTTCCATACGGCGGCGACTCGGAAACGTCGTTTAACGGTTTCCGTTACATCGAC GTGGACGCGCTGGGGCTGAGCATCGACGCGCCGTTAAGTTTACCGGACGTGGACGTTATGCTGACGTGTCACCAGAAGGA AGAAGCGTTCGAAGAGTTCAACCTCGACGAGTTTATGACGTGGCTTTACTAA
Protein sequence (LotjaGi1g1v0105200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVQSTLKTKKLIKLATPSSVFEDDPPCKRRRKTQKKLVRIIVTDHDATDDSDSSSDGERANTTATKRETTTFTVKINFP FTNTLSSSSLSPSSSSSLSSSSEQSLKKLKRVKKPTTPPSAATRRSHKFRGVRQRPWGRWAAEIRDPSQRRRLWLGTFDT AEEAATEYDKAAVKIKGPNAVTNFPNTPKEEPKTPTEELTAPPPVSDGGASFSDVLASPTSVLPYGGDSETSFNGFRYID VDALGLSIDAPLSLPDVDVMLTCHQKEEAFEEFNLDEFMTWLY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 281 | 281 | 3.1E-76 | – | |
| PANTHER | 1 | 281 | 281 | 3.1E-76 | – | |
| PIRSF | 8 | 283 | 276 | 1.3E-83 | ||
| MobiDBLite | 18 | 67 | 50 | - | – | |
| MobiDBLite | 38 | 57 | 20 | - | – | |
| MobiDBLite | 85 | 105 | 21 | - | – | |
| MobiDBLite | 85 | 134 | 50 | - | – | |
| Gene3D | 127 | 187 | 61 | 3.5E-31 | ||
| CDD | 128 | 187 | 60 | 1.51267E-34 | ||
| ProSiteProfiles | 128 | 185 | 58 | 23.933 | ||
| Pfam | 128 | 177 | 50 | 1.8E-12 | ||
| SUPERFAMILY | 128 | 185 | 58 | 2.42E-21 | ||
| SMART | 128 | 191 | 64 | 2.7E-39 | ||
| PRINTS | 129 | 140 | 12 | 6.1E-10 | ||
| PRINTS | 151 | 167 | 17 | 6.1E-10 | ||
| MobiDBLite | 179 | 213 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0105200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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